[Gate-users] Source histogram for CT
ali najafi darmian
najafy.ali at gmail.com
Sun Jun 27 10:38:17 CEST 2010
*Hello Tony*
**
*I think if you change these lines *
**
*/gate/source/xraygun/gps/energytype Arb*
*/gate/source/xraygun/gps/histname arb*
*to*
*/gate/source/xraygun/gps/energytype User
/gate/source/xraygun/gps/histname energy *
*your problem will solve.*
*--
Ali Najafi Darmian
Iran Tehran
*
On Fri, Jun 25, 2010 at 7:51 PM, <
gate-users-request at lists.opengatecollaboration.org> wrote:
> Send Gate-users mailing list submissions to
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> Today's Topics:
>
> 1. Gate_v6_p01 compilation problem (sebnem erturk)
> 2. Re: Gate_v6_p01 compilation problem (Simon Stute)
> 3. Re: Gate_v6_p01 compilation problem (sebnem erturk)
> 4. Source histogram for CT (Tony Evershed)
> 5. Re: Gate_v6_p01 compilation problem (sebnem erturk)
> 6. Re: Gate_v6_p01 compilation problem (sebnem erturk)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 25 Jun 2010 12:47:11 +0200
> From: sebnem erturk <sebnem.erturk at gmail.com>
> Subject: [Gate-users] Gate_v6_p01 compilation problem
> To: gate-users at lists.opengatecollaboration.org
> Cc: Giacomo <righetti at di.unipi.it>
> Message-ID:
> <AANLkTinocE3UpLy95uRQ1juoHRSMFcZqZq9CH9_W_PtN at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> Hello All,
>
> We are taking below message during our GATE installation, how can we solve
> the problem on debian 64bit .
>
> We are using versions below:
>
> CLHELP 2.0.4.6 / GATE 6.0_p01 / Geant 4.9.3 / Root 5.27.02
>
> Any suggestions?
>
> Entering source/physics ...
> Compiling GateVSource.cc ...
> src/GateVSource.cc: In member function 'void
> GateVSource::Visualize(G4String)':
> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
> scope:
> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> 'CLHEP::electron_charge' defined but not used
> /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
> 'CLHEP::HepRandomGenActive' defined but not used
> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> source/physics finished
> Using global libraries ...
> Linking Gate
> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> Gate.cc:(.text+0x29cf): undefined reference to
> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> `G4UIterminal::ExitHelp()'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> GateVSourceVoxelReader'
>
> Regards,
>
>
> --
>
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/
>
>
> ------------------------------
>
> Message: 2
> Date: Fri, 25 Jun 2010 13:04:31 +0200
> From: Simon Stute <gate.stute at gmail.com>
> Subject: Re: [Gate-users] Gate_v6_p01 compilation problem
> To: sebnem erturk <sebnem.erturk at gmail.com>
> Cc: Giacomo <righetti at di.unipi.it>,
> gate-users at lists.opengatecollaboration.org
> Message-ID:
> <AANLkTilKnr_DA6M3t0lII2lyiJnBOkp0LN477VrxKmah at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Hi Sebnem,
>
> Do NOT use G4 9.3 with any gate version for the moment. There are too much
> changes since 9.2 in physics processes that have to be investigated.
> Else concerning your problem, your are probably mixing v6 and v6.p01,
> because GateVisManager has been reintroduced only in patched version.
>
> Cheers,
> Simon
>
> On Fri, Jun 25, 2010 at 12:47 PM, sebnem erturk <sebnem.erturk at gmail.com
> >wrote:
>
> > Hello All,
> >
> > We are taking below message during our GATE installation, how can we
> solve
> > the problem on debian 64bit .
> >
> > We are using versions below:
> >
> > CLHELP 2.0.4.6 / GATE 6.0_p01 / Geant 4.9.3 / Root 5.27.02
> >
> > Any suggestions?
> >
> > Entering source/physics ...
> > Compiling GateVSource.cc ...
> > src/GateVSource.cc: In member function 'void
> > GateVSource::Visualize(G4String)':
> > src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> > /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
> > scope:
> > /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> > 'CLHEP::electron_charge' defined but not used
> > /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
> > 'CLHEP::HepRandomGenActive' defined but not used
> > make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> > source/physics finished
> > Using global libraries ...
> > Linking Gate
> > ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> > Gate.cc:(.text+0x29cf): undefined reference to
> > `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> > ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> > `G4UIterminal::ExitHelp()'
> > ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> > GateVSourceVoxelReader'
> >
> > Regards,
> >
> >
> > --
> >
> > Sebnem Erturk
> > University of Pisa
> > Applied Physics Dpt.
> > Largo Pontecorvo
> > 56127 Pisa-Italy
> > Office :0039 050 2214346
> > Mobile :0039 345 3331440
> > http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/<http://www.df.unipi.it/~fiig/>
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >
>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 25 Jun 2010 14:16:48 +0200
> From: sebnem erturk <sebnem.erturk at gmail.com>
> Subject: Re: [Gate-users] Gate_v6_p01 compilation problem
> To: Simon Stute <gate.stute at gmail.com>
> Cc: Giacomo <righetti at di.unipi.it>,
> gate-users at lists.opengatecollaboration.org
> Message-ID:
> <AANLkTikKCEhk4U_miQYSSEFVWDHMm2o7G_IHVXMSo35H at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> Hi Simon,
>
> Thank you very much for your guidance and support.
>
> We will change our version according to your suggestions.
>
> Best regards,
>
> Sebnem
>
> On Fri, Jun 25, 2010 at 1:04 PM, Simon Stute <gate.stute at gmail.com> wrote:
>
> > Hi Sebnem,
> >
> > Do NOT use G4 9.3 with any gate version for the moment. There are too
> much
> > changes since 9.2 in physics processes that have to be investigated.
> > Else concerning your problem, your are probably mixing v6 and v6.p01,
> > because GateVisManager has been reintroduced only in patched version.
> >
> > Cheers,
> > Simon
> >
> > On Fri, Jun 25, 2010 at 12:47 PM, sebnem erturk <sebnem.erturk at gmail.com
> >wrote:
> >
> >> Hello All,
> >>
> >> We are taking below message during our GATE installation, how can we
> solve
> >> the problem on debian 64bit .
> >>
> >> We are using versions below:
> >>
> >> CLHELP 2.0.4.6 / GATE 6.0_p01 / Geant 4.9.3 / Root 5.27.02
> >>
> >> Any suggestions?
> >>
> >> Entering source/physics ...
> >> Compiling GateVSource.cc ...
> >> src/GateVSource.cc: In member function 'void
> >> GateVSource::Visualize(G4String)':
> >> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> >> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
> >> scope:
> >> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> >> 'CLHEP::electron_charge' defined but not used
> >> /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
> >> 'CLHEP::HepRandomGenActive' defined but not used
> >> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> >> source/physics finished
> >> Using global libraries ...
> >> Linking Gate
> >> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> >> Gate.cc:(.text+0x29cf): undefined reference to
> >> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> >> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> >> `G4UIterminal::ExitHelp()'
> >> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> >> GateVSourceVoxelReader'
> >>
> >> Regards,
> >>
> >>
> >> --
> >>
> >> Sebnem Erturk
> >> University of Pisa
> >> Applied Physics Dpt.
> >> Largo Pontecorvo
> >> 56127 Pisa-Italy
> >> Office :0039 050 2214346
> >> Mobile :0039 345 3331440
> >> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/<http://www.df.unipi.it/~fiig/>
> >
> >> _______________________________________________
> >> Gate-users mailing list
> >> Gate-users at lists.opengatecollaboration.org
> >> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >>
> >
> >
>
>
> --
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/
>
>
> ------------------------------
>
> Message: 4
> Date: Fri, 25 Jun 2010 15:48:14 +0100
> From: "Tony Evershed" <a.n.z.evershed at qmul.ac.uk>
> Subject: [Gate-users] Source histogram for CT
> To: <gate-users at lists.opengatecollaboration.org>
> Message-ID: <000001cb1475$71095fc0$531c1f40$@n.z.evershed at qmul.ac.uk>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi,
> I?m trying to do cone-beam X-ray CT from a point source, and fell over at
> the first stage (setting up a source). The source macro (called by a main
> macro) uses the following code (taken pretty much wholesale from the
> classic
> example_CT in the latest vGate and slimmed down, with the source type
> changed to a point):
>
> /gate/source/addSource xraygun
> /gate/source/verbose 0
> /gate/source/xraygun/setActivity 350000. becquerel
> /gate/source/xraygun/gps/verbose 0
> /gate/source/xraygun/gps/particle gamma
> /gate/source/xraygun/gps/energytype Arb
> /gate/source/xraygun/gps/histname arb
> /gate/source/xraygun/gps/emin 10.00 keV
> /gate/source/xraygun/gps/emax 40.00 keV
>
> /gate/source/xraygun/gps/histpoint ?0.0100 ?5060586
> /gate/source/xraygun/gps/histpoint ?0.0105 ?4547466
> /gate/source/xraygun/gps/histpoint ?0.0110 ?4274620
> /gate/source/xraygun/gps/histpoint ?0.0115 ?4489648
> /gate/source/xraygun/gps/histpoint ?0.0120 ?4733971
> /gate/source/xraygun/gps/histpoint ?0.0125 ?5089220
> /gate/source/xraygun/gps/histpoint ?0.0130 ?5486806
> /gate/source/xraygun/gps/histpoint ?0.0135 ?6030102
> /gate/source/xraygun/gps/histpoint ?0.0140 ?6665430
> /gate/source/xraygun/gps/histpoint ?0.0145 ?7140114
> /gate/source/xraygun/gps/histpoint ?0.0150 ?7674678
> /gate/source/xraygun/gps/histpoint ?0.0155 ?8086993
> /gate/source/xraygun/gps/histpoint ?0.0160 ?8551672
> /gate/source/xraygun/gps/histpoint ?0.0165 ?8868724
> /gate/source/xraygun/gps/histpoint ?0.0170 ?9215647
> /gate/source/xraygun/gps/histpoint ?0.0175 ?9438009
> /gate/source/xraygun/gps/histpoint ?0.0180 ?9682990
> /gate/source/xraygun/gps/histpoint ?0.0185 ?9834746
> /gate/source/xraygun/gps/histpoint ?0.0190 ?9998208
> /gate/source/xraygun/gps/histpoint ?0.0195 ?10080460
> /gate/source/xraygun/gps/histpoint ?0.0200 ?10180510
> /gate/source/xraygun/gps/histpoint ?0.0205 ?10205130
> /gate/source/xraygun/gps/histpoint ?0.0210 ?10241880
> /gate/source/xraygun/gps/histpoint ?0.0215 ?10223500
> /gate/source/xraygun/gps/histpoint ?0.0220 ? 10216490
> /gate/source/xraygun/gps/histpoint ?0.0225 ?10156620
> /gate/source/xraygun/gps/histpoint ?0.0230 ?10105940
> /gate/source/xraygun/gps/histpoint ?0.0235 ?10022750
> /gate/source/xraygun/gps/histpoint ?0.0240 ?9940856
> /gate/source/xraygun/gps/histpoint ?0.0245 ?9828219
> /gate/source/xraygun/gps/histpoint ?0.0250 ?9723552
> /gate/source/xraygun/gps/histpoint ?0.0255 ?9603177
> /gate/source/xraygun/gps/histpoint ?0.0260 ?9485084
> /gate/source/xraygun/gps/histpoint ?0.0265 ?9349130
> /gate/source/xraygun/gps/histpoint ?0.0270 ?9218213
> /gate/source/xraygun/gps/histpoint ?0.0275 ?9078410
> /gate/source/xraygun/gps/histpoint ?0.0280 ?8940065
> /gate/source/xraygun/gps/histpoint ?0.0285 ?8793341
> /gate/source/xraygun/gps/histpoint ?0.0290 ?8654856
> /gate/source/xraygun/gps/histpoint ?0.0295 ?8503122
> /gate/source/xraygun/gps/histpoint ?0.0300 ?8357768
> /gate/source/xraygun/gps/histpoint ?0.0305 ?8207681
> /gate/source/xraygun/gps/histpoint ?0.0310 ?8067777
> /gate/source/xraygun/gps/histpoint ?0.0315 ?7917228
> /gate/source/xraygun/gps/histpoint ?0.0320 ?7772499
> /gate/source/xraygun/gps/histpoint ?0.0325 ?7629667
> /gate/source/xraygun/gps/histpoint ?0.0330 ?7487478
> /gate/source/xraygun/gps/histpoint ?0.0335 ?7345984
> /gate/source/xraygun/gps/histpoint ?0.0340 ?7209631
> /gate/source/xraygun/gps/histpoint ?0.0345 ?7071618
> /gate/source/xraygun/gps/histpoint ?0.0350 ?6935182
> /gate/source/xraygun/gps/histpoint ?0.0355 ?6797408
> /gate/source/xraygun/gps/histpoint ?0.0360 ?6662980
> /gate/source/xraygun/gps/histpoint ?0.0365 ?6534767
> /gate/source/xraygun/gps/histpoint ?0.0370 ?6407531
> /gate/source/xraygun/gps/histpoint ?0.0375 ?6280954
> /gate/source/xraygun/gps/histpoint ?0.0380 ?6159509
> /gate/source/xraygun/gps/histpoint ?0.0385 ?6036038
> /gate/source/xraygun/gps/histpoint ?0.0390 ?5916583
> /gate/source/xraygun/gps/histpoint ?0.0395 ?5798614
> /gate/source/xraygun/gps/histpoint ?0.0400 ?5684363
> /gate/source/xraygun/gps/arbint Lin
> /gate/source/xraygun/gps/type Point
> /gate/source/xraygun/gps/mintheta 0 ?deg
> /gate/source/xraygun/gps/maxtheta ?6.8 deg
> /gate/source/xraygun/gps/centre 0. 0. -15.0 cm
> /gate/source/xraygun/gps/angtype iso
> /gate/source/list
>
> This raises the following error:
>
> : double value expected.6
> > ***** [G4-cerr] ***** Illegal parameter (1)
> </gate/source/xraygun/gps/histpoint 0.0100 506586
> [Gate] Sorry, error in a macro command : abort.
>
> Am I missing something really obvious here that?s leading to this error?
>
> Many thanks,
> Tony Evershed
>
>
>
> ------------------------------
>
> Message: 5
> Date: Fri, 25 Jun 2010 17:09:46 +0200
> From: sebnem erturk <sebnem.erturk at gmail.com>
> Subject: Re: [Gate-users] Gate_v6_p01 compilation problem
> To: Simon Stute <gate.stute at gmail.com>
> Cc: gate-users at lists.opengatecollaboration.org
> Message-ID:
> <AANLkTilbquoCIXgTx9pIWNeD-Wtbq9yYondqqeR61TW8 at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> Hi Simon ,
>
> We changed our version of geant now we are using geant 4.9.2, clhep
> 2.0.4.2, root 5.27 gate_v6p01
>
> We are taking below messages on debian64 bit.
>
> What do you suggest us?
>
>
>
> Compiling GateVSource.cc ...
> src/GateVSource.cc: In member function 'void
> GateVSource::Visualize(G4String)':
> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global
> scope:
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> 'CLHEP::electron_charge' defined but not used
> /root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
> 'CLHEP::HepRandomGenActive' defined but not used
> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> source/physics finished
> [16:53:01] kirkrulez83: ...
> [16:53:02] kirkrulez83: Linking Gate
> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> Gate.cc:(.text+0x29df): undefined reference to
> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> GateVSourceVoxelReader'
>
> Regards,
>
> Sebnem
>
> On Fri, Jun 25, 2010 at 1:04 PM, Simon Stute <gate.stute at gmail.com> wrote:
>
>
>
> > Hi Sebnem,
> >
> > Do NOT use G4 9.3 with any gate version for the moment. There are too
> much
> > changes since 9.2 in physics processes that have to be investigated.
> > Else concerning your problem, your are probably mixing v6 and v6.p01,
> > because GateVisManager has been reintroduced only in patched version.
> >
> > Cheers,
> > Simon
> >
> > On Fri, Jun 25, 2010 at 12:47 PM, sebnem erturk <sebnem.erturk at gmail.com
> >wrote:
> >
> >> Hello All,
> >>
> >> We are taking below message during our GATE installation, how can we
> solve
> >> the problem on debian 64bit .
> >>
> >> We are using versions below:
> >>
> >> CLHELP 2.0.4.6 / GATE 6.0_p01 / Geant 4.9.3 / Root 5.27.02
> >>
> >> Any suggestions?
> >>
> >> Entering source/physics ...
> >> Compiling GateVSource.cc ...
> >> src/GateVSource.cc: In member function 'void
> >> GateVSource::Visualize(G4String)':
> >> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> >> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
> >> scope:
> >> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> >> 'CLHEP::electron_charge' defined but not used
> >> /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
> >> 'CLHEP::HepRandomGenActive' defined but not used
> >> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> >> source/physics finished
> >> Using global libraries ...
> >> Linking Gate
> >> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> >> Gate.cc:(.text+0x29cf): undefined reference to
> >> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> >> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> >> `G4UIterminal::ExitHelp()'
> >> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> >> GateVSourceVoxelReader'
> >>
> >> Regards,
> >>
> >>
> >> --
> >>
> >> Sebnem Erturk
> >> University of Pisa
> >> Applied Physics Dpt.
> >> Largo Pontecorvo
> >> 56127 Pisa-Italy
> >> Office :0039 050 2214346
> >> Mobile :0039 345 3331440
> >> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/<http://www.df.unipi.it/~fiig/>
> >
> >> _______________________________________________
> >> Gate-users mailing list
> >> Gate-users at lists.opengatecollaboration.org
> >> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >>
> >
> >
>
>
> --
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/
>
>
> ------------------------------
>
> Message: 6
> Date: Fri, 25 Jun 2010 17:21:01 +0200
> From: sebnem erturk <sebnem.erturk at gmail.com>
> Subject: Re: [Gate-users] Gate_v6_p01 compilation problem
> To: Simon Stute <gate.stute at gmail.com>
> Cc: gate-users at lists.opengatecollaboration.org
> Message-ID:
> <AANLkTil876_jZUdIOU53EfvDDZ3mdX4wfm6FMK4hn4O3 at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> Hi Simon,
>
> I am sending all to you , what we did below:
>
> We are using Debian "Lenny" x64
> CLHEP 2.0.4.2
> ./configure --prefix=$PWD/../
> make
> make install
> 2) GEANT 4.92 p03
> ./Configure -build
> the headers in one directory
> no visualization and no UI
> ./Configure -install
> ./Configure
> 3) Root 5.27
> ./configure --enable-gsl-shared
> make
> make install
> Gate 6.0p01
> with this section added in "env_gate.sh"
> export GATEHOME=/root/gate/gate_v6.0_p01
> export G4INSTALL=/root/gate/geant4.9.2.p01
> export G4VERSION=9.2
> export ROOTSYS=/root/gate/root
> export
>
> LD_LIBRARY_PATH="$ROOTSYS/lib/root:$GATEHOME/tmp/Linux-g++/Gate:$LD_LIBRARY_PATH"
> export LD_LIBRARY_PATH="$CLHEP_LIB_DIR:$LD_LIBRARY_PATH"
> export PATH="$ROOTSYS/bin:/root/gate_v6.0_p01/bin/Linux-g++:$PATH"
> export
> LD_LIBRARY_PATH="$ROOTSYS/lib:$ROOTSYS/lib/root:$ROOTSYS/include/root"
> export PATH="$GATEHOME/bin/Linux-g++:$PATH"
> source env_gate.sh
> make
> Compiling GateVSource.cc ...
> src/GateVSource.cc: In member function 'void
> GateVSource::Visualize(G4String)':
> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global
> scope:
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> 'CLHEP::electron_charge' defined but not used
> /root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
> 'CLHEP::HepRandomGenActive' defined but not used
> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> source/physics finished
>
> Regards,
>
> Sebnem
>
> On Fri, Jun 25, 2010 at 5:09 PM, sebnem erturk <sebnem.erturk at gmail.com
> >wrote:
>
> > Hi Simon ,
> >
> > We changed our version of geant now we are using geant 4.9.2, clhep
> > 2.0.4.2, root 5.27 gate_v6p01
> >
> > We are taking below messages on debian64 bit.
> >
> > What do you suggest us?
> >
> >
> >
> > Compiling GateVSource.cc ...
> > src/GateVSource.cc: In member function 'void
> > GateVSource::Visualize(G4String)':
> > src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> > /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global
> > scope:
> > /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> > 'CLHEP::electron_charge' defined but not used
> > /root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
> > 'CLHEP::HepRandomGenActive' defined but not used
> > make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> > source/physics finished
> > [16:53:01] kirkrulez83: ...
> > [16:53:02] kirkrulez83: Linking Gate
> > ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> > Gate.cc:(.text+0x29df): undefined reference to
> > `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> > ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> > GateVSourceVoxelReader'
> >
> > Regards,
> >
> > Sebnem
> >
> > On Fri, Jun 25, 2010 at 1:04 PM, Simon Stute <gate.stute at gmail.com>
> wrote:
> >
> >
> >
> >> Hi Sebnem,
> >>
> >> Do NOT use G4 9.3 with any gate version for the moment. There are too
> much
> >> changes since 9.2 in physics processes that have to be investigated.
> >> Else concerning your problem, your are probably mixing v6 and v6.p01,
> >> because GateVisManager has been reintroduced only in patched version.
> >>
> >> Cheers,
> >> Simon
> >>
> >> On Fri, Jun 25, 2010 at 12:47 PM, sebnem erturk <
> sebnem.erturk at gmail.com>wrote:
> >>
> >>> Hello All,
> >>>
> >>> We are taking below message during our GATE installation, how can we
> >>> solve
> >>> the problem on debian 64bit .
> >>>
> >>> We are using versions below:
> >>>
> >>> CLHELP 2.0.4.6 / GATE 6.0_p01 / Geant 4.9.3 / Root 5.27.02
> >>>
> >>> Any suggestions?
> >>>
> >>> Entering source/physics ...
> >>> Compiling GateVSource.cc ...
> >>> src/GateVSource.cc: In member function 'void
> >>> GateVSource::Visualize(G4String)':
> >>> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> >>> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
> >>> scope:
> >>> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80:
> warning:
> >>> 'CLHEP::electron_charge' defined but not used
> >>> /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
> >>> 'CLHEP::HepRandomGenActive' defined but not used
> >>> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> >>> source/physics finished
> >>> Using global libraries ...
> >>> Linking Gate
> >>> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> >>> Gate.cc:(.text+0x29cf): undefined reference to
> >>> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> >>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> >>> `G4UIterminal::ExitHelp()'
> >>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> >>> GateVSourceVoxelReader'
> >>>
> >>> Regards,
> >>>
> >>>
> >>> --
> >>>
> >>> Sebnem Erturk
> >>> University of Pisa
> >>> Applied Physics Dpt.
> >>> Largo Pontecorvo
> >>> 56127 Pisa-Italy
> >>> Office :0039 050 2214346
> >>> Mobile :0039 345 3331440
> >>> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/<http://www.df.unipi.it/~fiig/>
> >
> >>> _______________________________________________
> >>> Gate-users mailing list
> >>> Gate-users at lists.opengatecollaboration.org
> >>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >>>
> >>
> >>
> >
> >
> > --
> > Sebnem Erturk
> > University of Pisa
> > Applied Physics Dpt.
> > Largo Pontecorvo
> > 56127 Pisa-Italy
> > Office :0039 050 2214346
> > Mobile :0039 345 3331440
> > http://www.df.unipi.it/~fiig/
> >
>
>
>
> --
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/
>
>
> ------------------------------
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
> End of Gate-users Digest, Vol 49, Issue 25
> ******************************************
>
--
Ali Najafi Darmian
Iran Tehran
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