[Gate-users] Gate_v6_p01 compilation problem

[Simon Stute]

Hi Sebnem,

Your configuration seems to be OK.
When you print in this mail the output of the Gate compilation, does it mean
you did not make clean, and compile all again ?

Cheers,
Simon

On Fri, Jun 25, 2010 at 5:21 PM, sebnem erturk <sebnem.erturk at gmail.com>wrote:

> Hi Simon,
>
> I am sending all to you , what we did below:
>
>  We are using Debian "Lenny" x64
>  CLHEP 2.0.4.2
>  ./configure --prefix=$PWD/../
>  make
>  make install
>  2) GEANT 4.92 p03
>  ./Configure -build
>  the headers in one directory
>  no visualization and no UI
>   ./Configure -install
>  ./Configure
>  3) Root 5.27
> ./configure --enable-gsl-shared
>  make
>  make install
>  Gate 6.0p01
>  with this section added in "env_gate.sh"
> export GATEHOME=/root/gate/gate_v6.0_p01
> export G4INSTALL=/root/gate/geant4.9.2.p01
> export G4VERSION=9.2
> export ROOTSYS=/root/gate/root
> export
> LD_LIBRARY_PATH="$ROOTSYS/lib/root:$GATEHOME/tmp/Linux-g++/Gate:$LD_LIBRARY_PATH"
> export LD_LIBRARY_PATH="$CLHEP_LIB_DIR:$LD_LIBRARY_PATH"
> export PATH="$ROOTSYS/bin:/root/gate_v6.0_p01/bin/Linux-g++:$PATH"
> export
> LD_LIBRARY_PATH="$ROOTSYS/lib:$ROOTSYS/lib/root:$ROOTSYS/include/root"
> export PATH="$GATEHOME/bin/Linux-g++:$PATH"
> source env_gate.sh
> make
> Compiling GateVSource.cc ...
> src/GateVSource.cc: In member function 'void
> GateVSource::Visualize(G4String)':
> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global
> scope:
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> 'CLHEP::electron_charge' defined but not used
> /root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
> 'CLHEP::HepRandomGenActive' defined but not used
> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> source/physics finished
>
> Regards,
>
> Sebnem
>
> On Fri, Jun 25, 2010 at 5:09 PM, sebnem erturk <sebnem.erturk at gmail.com>wrote:
>
>> Hi Simon ,
>>
>> We changed our version  of geant now we are using geant 4.9.2, clhep
>> 2.0.4.2, root 5.27 gate_v6p01
>>
>> We are taking below messages on debian64 bit.
>>
>> What do you suggest us?
>>
>>
>>
>> Compiling GateVSource.cc ...
>> src/GateVSource.cc: In member function 'void
>> GateVSource::Visualize(G4String)':
>> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
>> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global
>> scope:
>> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
>> 'CLHEP::electron_charge' defined but not used
>> /root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
>> 'CLHEP::HepRandomGenActive' defined but not used
>> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
>> source/physics finished
>> [16:53:01] kirkrulez83: ...
>> [16:53:02] kirkrulez83: Linking Gate
>> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
>> Gate.cc:(.text+0x29df): undefined reference to
>> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
>> GateVSourceVoxelReader'
>>
>> Regards,
>>
>> Sebnem
>>
>> On Fri, Jun 25, 2010 at 1:04 PM, Simon Stute <gate.stute at gmail.com>wrote:
>>
>>
>>
>>> Hi Sebnem,
>>>
>>> Do NOT use G4 9.3 with any gate version for the moment. There are too
>>> much changes since 9.2 in physics processes that have to be investigated.
>>> Else concerning your problem, your are probably mixing v6 and v6.p01,
>>> because GateVisManager has been reintroduced only in patched version.
>>>
>>> Cheers,
>>> Simon
>>>
>>> On Fri, Jun 25, 2010 at 12:47 PM, sebnem erturk <sebnem.erturk at gmail.com
>>> > wrote:
>>>
>>>> Hello All,
>>>>
>>>> We are taking below message during our GATE installation, how can we
>>>> solve
>>>> the problem on debian 64bit .
>>>>
>>>> We are using versions below:
>>>>
>>>>  CLHELP 2.0.4.6  /  GATE  6.0_p01 / Geant 4.9.3 / Root 5.27.02
>>>>
>>>> Any suggestions?
>>>>
>>>> Entering source/physics ...
>>>> Compiling GateVSource.cc ...
>>>> src/GateVSource.cc: In member function 'void
>>>> GateVSource::Visualize(G4String)':
>>>> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
>>>> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
>>>> scope:
>>>> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80: warning:
>>>> 'CLHEP::electron_charge' defined but not used
>>>> /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
>>>> 'CLHEP::HepRandomGenActive' defined but not used
>>>> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
>>>> source/physics finished
>>>> Using global libraries ...
>>>> Linking Gate
>>>> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
>>>> Gate.cc:(.text+0x29cf): undefined reference to
>>>> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
>>>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
>>>> `G4UIterminal::ExitHelp()'
>>>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
>>>> GateVSourceVoxelReader'
>>>>
>>>> Regards,
>>>>
>>>>
>>>> --
>>>>
>>>> Sebnem Erturk
>>>> University of Pisa
>>>> Applied Physics Dpt.
>>>> Largo Pontecorvo
>>>> 56127 Pisa-Italy
>>>> Office :0039 050 2214346
>>>> Mobile :0039 345 3331440
>>>> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/>
>>>> _______________________________________________
>>>> Gate-users mailing list
>>>> Gate-users at lists.opengatecollaboration.org
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>>
>>>
>>>
>>
>>
>> --
>> Sebnem Erturk
>> University of Pisa
>> Applied Physics Dpt.
>> Largo Pontecorvo
>> 56127 Pisa-Italy
>> Office :0039 050 2214346
>> Mobile :0039 345 3331440
>> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/>
>>
>
>
>
> --
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/>
>