[Gate-users] Gate_v6_p01 compilation problem

[sebnem erturk]

Hi Simon,

I am sending all to you , what we did below:

 We are using Debian "Lenny" x64
 CLHEP 2.0.4.2
 ./configure --prefix=$PWD/../
 make
 make install
 2) GEANT 4.92 p03
 ./Configure -build
 the headers in one directory
 no visualization and no UI
  ./Configure -install
 ./Configure
 3) Root 5.27
./configure --enable-gsl-shared
 make
 make install
 Gate 6.0p01
 with this section added in "env_gate.sh"
export GATEHOME=/root/gate/gate_v6.0_p01
export G4INSTALL=/root/gate/geant4.9.2.p01
export G4VERSION=9.2
export ROOTSYS=/root/gate/root
export
LD_LIBRARY_PATH="$ROOTSYS/lib/root:$GATEHOME/tmp/Linux-g++/Gate:$LD_LIBRARY_PATH"
export LD_LIBRARY_PATH="$CLHEP_LIB_DIR:$LD_LIBRARY_PATH"
export PATH="$ROOTSYS/bin:/root/gate_v6.0_p01/bin/Linux-g++:$PATH"
export
LD_LIBRARY_PATH="$ROOTSYS/lib:$ROOTSYS/lib/root:$ROOTSYS/include/root"
export PATH="$GATEHOME/bin/Linux-g++:$PATH"
source env_gate.sh
make
Compiling GateVSource.cc ...
src/GateVSource.cc: In member function 'void
GateVSource::Visualize(G4String)':
src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
/root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global scope:
/root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
'CLHEP::electron_charge' defined but not used
/root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
'CLHEP::HepRandomGenActive' defined but not used
make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
source/physics finished

Regards,

Sebnem

On Fri, Jun 25, 2010 at 5:09 PM, sebnem erturk <sebnem.erturk at gmail.com>wrote:

> Hi Simon ,
>
> We changed our version  of geant now we are using geant 4.9.2, clhep
> 2.0.4.2, root 5.27 gate_v6p01
>
> We are taking below messages on debian64 bit.
>
> What do you suggest us?
>
>
>
> Compiling GateVSource.cc ...
> src/GateVSource.cc: In member function 'void
> GateVSource::Visualize(G4String)':
> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h: At global
> scope:
> /root/gate/2.0.4.2/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> 'CLHEP::electron_charge' defined but not used
> /root/gate/2.0.4.2/include/CLHEP/Random/Randomize.h:67: warning:
> 'CLHEP::HepRandomGenActive' defined but not used
> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
> source/physics finished
> [16:53:01] kirkrulez83: ...
> [16:53:02] kirkrulez83: Linking Gate
> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
> Gate.cc:(.text+0x29df): undefined reference to
> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
> GateVSourceVoxelReader'
>
> Regards,
>
> Sebnem
>
> On Fri, Jun 25, 2010 at 1:04 PM, Simon Stute <gate.stute at gmail.com> wrote:
>
>
>
>> Hi Sebnem,
>>
>> Do NOT use G4 9.3 with any gate version for the moment. There are too much
>> changes since 9.2 in physics processes that have to be investigated.
>> Else concerning your problem, your are probably mixing v6 and v6.p01,
>> because GateVisManager has been reintroduced only in patched version.
>>
>> Cheers,
>> Simon
>>
>> On Fri, Jun 25, 2010 at 12:47 PM, sebnem erturk <sebnem.erturk at gmail.com>wrote:
>>
>>> Hello All,
>>>
>>> We are taking below message during our GATE installation, how can we
>>> solve
>>> the problem on debian 64bit .
>>>
>>> We are using versions below:
>>>
>>>  CLHELP 2.0.4.6  /  GATE  6.0_p01 / Geant 4.9.3 / Root 5.27.02
>>>
>>> Any suggestions?
>>>
>>> Entering source/physics ...
>>> Compiling GateVSource.cc ...
>>> src/GateVSource.cc: In member function 'void
>>> GateVSource::Visualize(G4String)':
>>> src/GateVSource.cc:123: error: 'GateVisManager' has not been declared
>>> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h: At global
>>> scope:
>>> /root/gate/2.0.4.6/include/CLHEP/Units/PhysicalConstants.h:80: warning:
>>> 'CLHEP::electron_charge' defined but not used
>>> /root/gate/2.0.4.6/include/CLHEP/Random/Randomize.h:67: warning:
>>> 'CLHEP::HepRandomGenActive' defined but not used
>>> make[1]: *** [../../tmp/Linux-g++/Gate/GateVSource.o] Error 1
>>> source/physics finished
>>> Using global libraries ...
>>> Linking Gate
>>> ./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
>>> Gate.cc:(.text+0x29cf): undefined reference to
>>> `G4UIterminal::G4UIterminal(G4VUIshell*, bool)'
>>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
>>> `G4UIterminal::ExitHelp()'
>>> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for
>>> GateVSourceVoxelReader'
>>>
>>> Regards,
>>>
>>>
>>> --
>>>
>>> Sebnem Erturk
>>> University of Pisa
>>> Applied Physics Dpt.
>>> Largo Pontecorvo
>>> 56127 Pisa-Italy
>>> Office :0039 050 2214346
>>> Mobile :0039 345 3331440
>>> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/>
>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>
>>
>>
>
>
> --
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/
>



-- 
Sebnem Erturk
University of Pisa
Applied Physics Dpt.
Largo Pontecorvo
56127 Pisa-Italy
Office :0039 050 2214346
Mobile :0039 345 3331440
http://www.df.unipi.it/~fiig/