[Gate-users] OS X 10.6.3 Snow Leopard

Tue Jun 1 21:17:50 CEST 2010

Hi Eunsin,

it looks a bit that you are mixing libraries compiled and linked
under 32 and 64 bit. In case you upgraded from a former
Leopard 32bit system and now are running SnowLeopard,
you need to recompile the whole bunch of programs, starting
from CLHEP, etc. and ending with gate.

Hope this comes closer to a solution.

Kind regards,

Uwe Pietrzyk
-----
On 01.06.2010, at 19:25, Eunsin Lee wrote:

> Hi Uwe,
> 
> I set as:
> export PATH=$PATH:$GATEHOME/bin/Darwin-g++
> 
> But still got the same errors...
> Any other ideas?
> 
> Thanks so much,
> Eunsin
> 
> ########################################
> Eunsin Lee
> Doctoral Student of Physics
> Texas A&M University
> CDF and CMS Collaborations
> elee at fnal.gov
> 979-845-7899
> ########################################
> 
> ----- Original Message -----
> From: Uwe Pietrzyk <u.pietrzyk at fz-juelich.de>
> Date: Tuesday, June 1, 2010 12:07 pm
> Subject: Re: [Gate-users] OS X 10.6.3 Snow Leopard
> To: Eunsin Lee <elee at fnal.gov>
> 
>> Hi Eunsin,
>> 
>> did you add  something like 
>> 
>> setenv PATH "${PATH}:${GATEHOME}/bin/Darwin-g++"
>> 
>> in your .cshrc or .bashrc, ... ?
>> 
>> I remember that I had to add this line, otherwise the shared libraries 
>> were not found.
>> 
>> Hope this helps!
>> 
>> Kind regards,
>> 
>> Uwe Pietrzyk
>> -----
>> On 01.06.2010, at 17:55, Eunsin Lee wrote:
>> 
>>> Hi Uwe and all who kindly replied,
>>> 
>>> At the end of installing process, the same error message showing up:
>>> 
>>> =====
>>> Creating shared library tmp/Darwin-g++/Gate/libGate.dylib ...
>>> ld: warning: in GateARFDataToRoot.o, file was built for i386 which 
>> is not the architecture being linked (x86_64)
>>> ld: warning: in GateARFDataToRootMessenger.o, file was built for 
>> i386 which is not the architecture being linked (x86_64)
>>> ld: warning: in GateARFSD.o, file was built for i386 which is not 
>> the architecture being linked (x86_64)
>>> ld: warning: in GateARFSDMessenger.o, file was built for i386 which 
>> is not the architecture being linked (x86_64)
>>> ld: warning: in GateARFTable.o, file was built for i386 which is not 
>> the architecture being linked (x86_64)
>>> ld: warning: in GateARFTableMgr.o, file was built for i386 which is 
>> not the architecture being linked (x86_64)
>>> ld: warning: in GateARFTableMgrMessenger.o, file was built for i386 
>> which is not the architecture being linked (x86_64)
>>> .
>>> .
>>> .
>>> ld: symbol(s) not found
>>> collect2: ld returned 1 exit status
>>> make: *** [bin/Darwin-g++/Gate] Error 1
>>> =====
>>> ########################################
>>> Eunsin Lee
>>> Post Doctoral Research Associate
>>> PET Imaging Group
>>> University of Pennsylvania
>>> elee at fnal.gov
>>> 979-574-7235
>>> ########################################
>>> 
>>> ----- Original Message -----
>>> From: Uwe Pietrzyk <u.pietrzyk at fz-juelich.de>
>>> Date: Tuesday, June 1, 2010 10:59 am
>>> Subject: Re: [Gate-users] OS X 10.6.3 Snow Leopard
>>> To: Eunsin Lee <elee at fnal.gov>
>>> Cc: gate-users at lists.opengatecollaboration.org
>>> 
>>>> Hi Eunsin,
>>>> 
>>>> this is what I successfully use to run GATE on my MacBook Pro
>>>> under Mac OS X (10.6.3):
>>>> 
>>>> CLHEP 2.0.3.2
>>>> geant4.9.2.p03
>>>> root 5.24
>>>> gate_v6.0_p01
>>>> 
>>>> (I am not using lmf_v3.0)
>>>> 
>>>> Hope this helps.
>>>> 
>>>> Kind regards,
>>>> 
>>>> Uwe Pietrzyk
>>>> -----
>>>> On 01.06.2010, at 15:36, Eunsin Lee wrote:
>>>> 
>>>> Dear all,
>>>> 
>>>> Has anyone ever successfully built GATE on mac OS X 10.6.3 snow leopard?
>>>> If so what versions of geant should I install?
>>>> 
>>>> Thanks,
>>>> Eunsin
>>>> 
>>>> ########################################
>>>> Eunsin Lee
>>>> Doctoral Student of Physics
>>>> Texas A&M University
>>>> CDF and CMS Collaborations
>>>> elee at fnal.gov<
>>>> 979-845-7899
>>>> ########################################
>>>> _______________________________________________
>>>> Gate-users mailing list
>>>> Gate-users at lists.opengatecollaboration.org
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>> 
>>>> /----------------------------------------------------------------------
>>>> Prof. Dr. Uwe Pietrzyk
>>>> Diplom-Physiker
>>>> Institut für Neurowissenschaften und Medizin / INM-1
>>>> Forschungszentrum Jülich GmbH
>>>> 52425 Jülich
>>>> Tel: +49-2461-61 4763
>>>> Fax: +49-2461-61 2820 + 8229
>>>> Mobil: +49-162-103-4871
>>>> eMail: U.Pietrzyk at fz-juelich.de<
>>>> 
>>>> &
>>>> Bergische Universität Wuppertal
>>>> Fachbereich C - Physik / D.08.01
>>>> Gaußstr. 20
>>>> 42097 Wuppertal
>>>> Tel: +49-(0)202-439-3523
>>>> Fax: +49-(0)202-439-2811
>>>> eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de<
>>>> 
>>>> ----------------------------------------------------------------------/
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> ------------------------------------------------------------------------------------------------
>>>> ------------------------------------------------------------------------------------------------
>>>> Forschungszentrum Juelich GmbH
>>>> 52425 Juelich
>>>> Sitz der Gesellschaft: Juelich
>>>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
>>>> Vorsitzende des Aufsichtsrats: MinDir'in Baerbel Brumme-Bothe
>>>> Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender),
>>>> Dr. Ulrich Krafft (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
>>>> Prof. Dr. Sebastian M. Schmidt
>>>> ------------------------------------------------------------------------------------------------
>>>> ------------------------------------------------------------------------------------------------
>> 
>> /----------------------------------------------------------------------
>> Prof. Dr. Uwe Pietrzyk
>> Diplom-Physiker
>> Institut für Neurowissenschaften und Medizin / INM-1
>> Forschungszentrum Jülich GmbH
>> 52425 Jülich
>> Tel: +49-2461-61 4763
>> Fax: +49-2461-61 2820 + 8229
>> Mobil: +49-162-103-4871
>> eMail: U.Pietrzyk at fz-juelich.de
>> http://www.fz-juelich.de/inm
>> &
>> Bergische Universität Wuppertal
>> Fachbereich C - Physik / D.08.01
>> Gaußstr. 20
>> 42097 Wuppertal
>> Tel: +49-(0)202-439-3523
>> Fax: +49-(0)202-439-2811
>> eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de
>> http://www.medizinphysik.uni-wuppertal.de
>> ----------------------------------------------------------------------/
>> 
>> 
>> 
>> 
>> 
>> 
>> 

/----------------------------------------------------------------------
Prof. Dr. Uwe Pietrzyk
Diplom-Physiker
Institut für Neurowissenschaften und Medizin / INM-1
Forschungszentrum Jülich GmbH
52425 Jülich
Tel: +49-2461-61 4763
Fax: +49-2461-61 2820 + 8229
Mobil: +49-162-103-4871
eMail: U.Pietrzyk at fz-juelich.de
http://www.fz-juelich.de/inm
&
Bergische Universität Wuppertal
Fachbereich C - Physik / D.08.01
Gaußstr. 20
42097 Wuppertal
Tel: +49-(0)202-439-3523
Fax: +49-(0)202-439-2811
eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de
http://www.medizinphysik.uni-wuppertal.de
----------------------------------------------------------------------/