[Gate-users] Link problem in compiling Gate5-p01

[Ida Häggström]

Hello Chris!

I would try adding the path to your .o-files to LD_LIBRARY_PATH, like I
wrote in the post to Congwu. The default path where they end up is
"gate_your_version/tmp/Linux-g++/Gate", you can check that directory to see
if you find the files there (the ones which produce the undefined
references, such as GateARFDataToRoot etc.). If that doesn't work, I don't
know! =)

/Ida

2009/10/9 Chris Reynolds <C.Reynolds at westminster.ac.uk>

>
> Hi,
> I'm also have linker issues on Ubuntu. Similarly compilation is fine:
>
> Linking Gate
> ./tmp/Linux-g++/Gate/libGate.a(GateOutputMgr.o): In function
> `GateOutputMgr::GateOutputMgr(G4String)':
> GateOutputMgr.cc:(.text+0xd13): undefined reference to
> `GateARFDataToRoot::GateARFDataToRoot(G4String const&, GateOutputMgr*,
> DigiMode)'
> ./tmp/Linux-g++/Gate/libGate.a(GateOutputMgr.o): In function
> `GateOutputMgr::GateOutputMgr(G4String)':
> GateOutputMgr.cc:(.text+0x12b3): undefined reference to
> `GateARFDataToRoot::GateARFDataToRoot(G4String const&, GateOutputMgr*,
> DigiMode)'
> ./tmp/Linux-g++/Gate/libGate.a(GateSteppingAction.o): In function
> `GateSteppingAction::UserSteppingAction(G4Step const*)':
> GateSteppingAction.cc:(.text+0x232d): undefined reference to `typeinfo
> for GateARFDataToRoot'
> GateSteppingAction.cc:(.text+0x23b3): undefined reference to
> `GateARFDataToRoot::IncrementNbOfSourcePhotons()'
> collect2: ld returned 1 exit status
> make: *** [bin/Linux-g++/Gate] Error 1
>
>
> On Wed, 2009-10-07 at 13:44 -0700, C C wrote:
> > Hi, everyone, I have problems of compiling the gate5.
> > the OS is Suse. It seems the compilation is not a problem. But just
> > cannot link. In the screen output there are a lot of "undefinded
> > reference" error. Below is part of the message. Can anybody give a
> > hint what may be the problem. Thanks a lot.
> >
> > Congwu
> >
> > ..........
> > GateMDBFieldDecoder.cc:(.text+0x1843): undefined reference to
> > `GateTokenizer::CleanUpString(G4String&)'
> > GateMDBFieldDecoder.cc:(.text+0x1857): undefined reference to
> > `GateTokenizer::BreakString(G4String const&, char)'
> > GateMDBFieldDecoder.cc:(.text+0x1881): undefined reference to
> > `GateTokenizer::CleanUpString(G4String&)'
> > ./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o): In function
> > `GateMDBFieldDecoder::DecodeNumericField(G4String const&, G4String,
> > G4String const&, GateMap<G4String, int>&, GateMap<G4String,
> > double>&)':
> > GateMDBFieldDecoder.cc:(.text+0x254e): undefined reference to
> > `GateTokenizer::CleanUpString(G4String&)'
> > GateMDBFieldDecoder.cc:(.text+0x2648): undefined reference to
> > `GateTokenizer::CleanUpString(G4String&)'
> > ./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o): In function
> > `GateMDBFieldDecoder::DecodeTextField(G4String const&, G4String,
> > G4String const&, GateMap<G4String, int>&)':
> > GateMDBFieldDecoder.cc:(.text+0x2bce): undefined reference to
> > `GateTokenizer::CleanUpString(G4String&)'
> > GateMDBFieldDecoder.cc:(.text+0x2cc5): undefined reference to
> > `GateTokenizer::CleanUpString(G4String&)'
> > ./tmp/Linux-g
> > ++/Gate/libGate.a(GateMDBFieldDecoder.o):GateMDBFieldDecoder.cc:(.text
> > +0x2f8a): more undefined references to
> > `GateTokenizer::CleanUpString(G4String&)' follow
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x5b): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x7c): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0xd4): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x124): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> > `GateCompressedVoxelOutputMessenger::SetNewValue(G4UIcommand*,
> > G4String)':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x31f): undefined
> > reference to `GateOutputModuleMessenger::SetNewValue(G4UIcommand*,
> > G4String)'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::GateCompressedVoxelOutputMessenger(GateCompressedVoxelOutput*)':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x490): undefined
> > reference to
> >
> `GateOutputModuleMessenger::GateOutputModuleMessenger(GateVOutputModule*)'
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x73b): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::GateCompressedVoxelOutputMessenger(GateCompressedVoxelOutput*)':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x960): undefined
> > reference to
> >
> `GateOutputModuleMessenger::GateOutputModuleMessenger(GateVOutputModule*)'
> > GateCompressedVoxelOutputMessenger.cc:(.text+0xc0b): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0xc9): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):
> > In function
> >
> `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':
> > GateCompressedVoxelOutputMessenger.cc:(.text+0x119): undefined
> > reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
> > ./tmp/Linux-g
> >
> ++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):(.rodata._ZTI34GateCompressedVoxelOutputMessenger[typeinfo
> for GateCompressedVoxelOutputMessenger]+0x10): undefined reference to
> `typeinfo for GateOutputModuleMessenger'
> > ./tmp/Linux-g++/Gate/libGate.a(GateFictitiousVoxelMapInserter.o): In
> > function `GateFictitiousVoxelMapInserter::AddOutput(G4String)':
> > GateFictitiousVoxelMapInserter.cc:(.text+0xb36): undefined reference
> > to `GateOutputMgr::instance'
> > GateFictitiousVoxelMapInserter.cc:(.text+0xb48): undefined reference
> > to `GateOutputMgr::instance'
> > GateFictitiousVoxelMapInserter.cc:(.text+0xb54): undefined reference
> > to `GateOutputMgr::m_digiMode'
> > GateFictitiousVoxelMapInserter.cc:(.text+0xb86): undefined reference
> > to `GateOutputMgr::AddOutputModule(GateVOutputModule*)'
> > GateFictitiousVoxelMapInserter.cc:(.text+0xbfe): undefined reference
> > to `GateOutputMgr::GateOutputMgr(G4String)'
> > GateFictitiousVoxelMapInserter.cc:(.text+0xc05): undefined reference
> > to `GateOutputMgr::instance'
> > collect2: ld returned 1 exit status
> > make: *** [bin/Linux-g++/Gate] Error 1
> >
> >
> >
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>
>
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