[Gate-users] Gate-users Digest, Vol 37, Issue 4

Chen, Yu Yu.Chen at umassmed.edu
Mon Jun 8 21:53:24 CEST 2009

I just encountered this problem yesterday and never had such a problem before using the same gate.
Even more puzzling, I simultaneously submitted tens of jobs, and some of them had this problem and quit, and others run well without any problems. 
Just try to resubmit job to see if it is still the same. 
Yu Chen, Ph.D. 
University of Massachusetts Medical School 
Department of Radiology 
55 Lake Avenue North 
Worcester, MA 01655-0243 
Phone: (508) 856-6123 
Fax: (508) 856-6363


From: gate-users-bounces at lists.healthgrid.org on behalf of gate-users-request at lists.healthgrid.org
Sent: Sun 6/7/2009 6:00 AM
To: gate-users at lists.healthgrid.org
Subject: Gate-users Digest, Vol 37, Issue 4

Send Gate-users mailing list submissions to
        gate-users at lists.healthgrid.org

To subscribe or unsubscribe via the World Wide Web, visit
or, via email, send a message with subject or body 'help' to
        gate-users-request at lists.healthgrid.org

You can reach the person managing the list at
        gate-users-owner at lists.healthgrid.org

When replying, please edit your Subject line so it is more specific
than "Re: Contents of Gate-users digest..."

Today's Topics:

   1. GateMaterial Error in Voxelized Phantom simulation (Fei Gao)


Message: 1
Date: Sat, 6 Jun 2009 21:46:00 +0800
From: "Fei Gao" <gaof at zju.edu.cn>
Subject: [Gate-users] GateMaterial Error in Voxelized Phantom
To: <gate-users at lists.healthgrid.org>
Message-ID: <444294232.25107 at zju.edu.cn>
Content-Type: text/plain; charset="us-ascii"

Dear Gate users,

I just reinstalled GATE, benchmarks and some examples run well,

But when I simulate a system of Voxelized phantom, the macros used are from
the example folders:



I get error messages as follow:

/gate/world/daughters/name hof_brain
/gate/world/daughters/insert parameterizedBoxMatrix
   GateMaterialDatabase: did not load properties table for material
     This is only a problem when OPTICAL PHOTONS are transported in this
/gate/hof_brain/geometry/insertReader interfile
GateVGeometryVoxelReader::GateVGeometryVoxelReader: m_voxelTranslator 0
/gate/hof_brain/interfileReader/insertTranslator range
GateVGeometryVoxelReaderMessenger::SetNewValue: newValue (translatorType) :
/gate/hof_brain/interfileReader/rangeTranslator/readTable range.dat

!!! GateMDBFile::LookForElementIndbStream:  
        I could not find any section [Materials] in the material database
        You should check the database file.
        Computation aborted!!!

*** G4Exception: Aborting execution ***

However, when I checked the file GateMaterials.db, I do find "[Materials]"
in it.

Is there anybody encounter this problem? Or some suggestion?

Any help will be highly appreciated!

Many thanks



-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.healthgrid.org/archives/gate-users/attachments/20090606/bf029adf/attachment.html>


Gate-users mailing list
Gate-users at lists.healthgrid.org

End of Gate-users Digest, Vol 37, Issue 4

-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Type: application/ms-tnef
Size: 7359 bytes
Desc: not available
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20090608/bf9c3ee2/attachment.bin>

More information about the Gate-users mailing list