[Gate-users] Command not found, directories missing

[Edoardo Pasca]

On Fri, 2009-02-06 at 13:30 +0100, mario bachaalany wrote:
> Hello everyone.
> 
> I'm starting to use gate. The compilation with gcc and g++ 3.3.5 was 
> finished normaly.
> During compilation, I wrote all of stdout to a log file.  I monitored the
> build, so as to catch messages written to stderr.
> And all messages are normal except any warning to unsed parameters.
> 
> 
> ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
> ----------------------
> 
> ***** COMMAND NOT FOUND </gate/output/ascii/setOutFileHitsFlag 0> *****
> 
> ***** Batch is interupted!! *****
> Idle>
> 
> The problem is that there are some directories missing :
> gate/digitizer
> gate/output/ascii and gate/output/root
> 

>From what you write it's not so easy to get an idea. It looks like you
can't define the proper digitizer, and can't define the output; so you
have a pretty useless Gate version... Maybe posting the logs of
compilation can help (maybe filter out the interesting stuff). 

In any case, are you sure to have set the environment variables
correctly? I attach the files I source before starting Gate from csh.
Give a look and change what has to be changed for your configuration.

Ciao

Edo

> The following version of software are installed:
> ROOT_5.22.00, CHLEP2.0.3.2, GEANT4.9.1.p01, GATE4.0.0 and Debian_Farge 3.1
> 
> Thank you for any responses or ideas,
> Mario Bachaalany
> 
> 
> email message attachment
> > -------- Forwarded Message --------
> > From: mario bachaalany <mario at sbgmail.in2p3.fr>
> > To: gate-users at lists.healthgrid.org
> > <gate-users at lists.healthgrid.org>
> > Subject: Command not found, directories missing
> > Date: Thu, 5 Feb 2009 16:18:25 +0100
> > 
> > Hello everyone.
> > 
> > I'm starting to use gate. The compilation with gcc and g++ 3.3.5 was 
> > finished normaly.
> > During compilation, I wrote all of stdout to a log file.  I monitored the
> > build, so as to catch messages written to stderr.
> > And all messages are normal except any warning to unsed parameters.
> > 
> > 
> > However, I'm having some problems running the benchmark PET. The errors 
> > are the following:
> > 
> > 
> > *************************************************************
> >  Geant4 version Name: geant4-09-01-patch-01    (25-January-2008)
> >                       Copyright : Geant4 Collaboration
> >                       Reference : NIM A 506 (2003), 250-303
> >                             WWW : http://cern.ch/geant4
> > *************************************************************
> > 
> > [...]
> > 
> > **********************************************************************
> >  GATE version name: gate_v4.0.0  (20-August-2008)
> >                     Copyright : OpenGATE Collaboration
> >                     Reference : Phys. Med. Biol. 49 (2004) 4543-4561
> >                     WWW : http://opengatecollaboration.healthgrid.org/
> > **********************************************************************
> > 
> > [...]
> > Tangential nb of crystals: 5
> > Radial nb of layers: 2
> > ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
> > 
> > ***** Batch is interupted!! *****
> >  Ignoring confine condition
> >  Ignoring confine condition
> > GateSourceMgr::ListSources: List of the sources in the source managaer
> > Source --------------> F18LineSource
> >   ID                 : 0
> >   type               :
> >   activity (Bq)      : 100000
> >   startTime (s)      : 0
> >   time (s)           : 0
> >   forcedUnstable     : 1
> >   forcedHalfLife (s) : 6586.2
> >   verboseLevel       : 0
> > ----------------------
> > 
> > Source --------------> O15LineSource
> >   ID                 : 1
> >   type               :
> >   activity (Bq)      : 100000
> >   startTime (s)      : 0
> >   time (s)           : 0
> >   forcedUnstable     : 1
> >   forcedHalfLife (s) : 122.24
> >   verboseLevel       : 0
> > ----------------------
> > 
> > ***** COMMAND NOT FOUND </gate/output/ascii/setOutFileHitsFlag 0> *****
> > 
> > ***** Batch is interupted!! *****
> > Idle>
> > 
> > The problem is that there are some directories missing :
> > gate/digitizer
> > gate/output/ascii and gate/output/root
> > 
> > The following version of software are installed:
> > ROOT_5.22.00, CHLEP2.0.3.2, GEANT4.9.1.p01, GATE4.0.0 and Debian_Farge 3.1
> > 
> > Thank you for any responses or ideas,
> > Mario Bachaalany
> > 
> > 
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