[Gate-users] Command not found, directories missing

mario bachaalany mario at sbgmail.in2p3.fr
Fri Feb 6 13:30:08 CET 2009


Hello everyone.

I'm starting to use gate. The compilation with gcc and g++ 3.3.5 was 
finished normaly.
During compilation, I wrote all of stdout to a log file.  I monitored the
build, so as to catch messages written to stderr.
And all messages are normal except any warning to unsed parameters.


However, I'm having some problems running the benchmark PET. The errors 
are the following:


*************************************************************
Geant4 version Name: geant4-09-01-patch-01    (25-January-2008)
                     Copyright : Geant4 Collaboration
                     Reference : NIM A 506 (2003), 250-303
                           WWW : http://cern.ch/geant4
*************************************************************

[...]

**********************************************************************
GATE version name: gate_v4.0.0  (20-August-2008)
                   Copyright : OpenGATE Collaboration
                   Reference : Phys. Med. Biol. 49 (2004) 4543-4561
                   WWW : http://opengatecollaboration.healthgrid.org/
**********************************************************************

[...]
Tangential nb of crystals: 5
Radial nb of layers: 2
***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****

***** Batch is interupted!! *****
Ignoring confine condition
Ignoring confine condition
GateSourceMgr::ListSources: List of the sources in the source managaer
Source --------------> F18LineSource
 ID                 : 0
 type               :
 activity (Bq)      : 100000
 startTime (s)      : 0
 time (s)           : 0
 forcedUnstable     : 1
 forcedHalfLife (s) : 6586.2
 verboseLevel       : 0
----------------------

Source --------------> O15LineSource
 ID                 : 1
 type               :
 activity (Bq)      : 100000
 startTime (s)      : 0
 time (s)           : 0
 forcedUnstable     : 1
 forcedHalfLife (s) : 122.24
 verboseLevel       : 0
----------------------

***** COMMAND NOT FOUND </gate/output/ascii/setOutFileHitsFlag 0> *****

***** Batch is interupted!! *****
Idle>

The problem is that there are some directories missing :
gate/digitizer
gate/output/ascii and gate/output/root

The following version of software are installed:
ROOT_5.22.00, CHLEP2.0.3.2, GEANT4.9.1.p01, GATE4.0.0 and Debian_Farge 3.1

Thank you for any responses or ideas,
Mario Bachaalany


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