[Gate-users] GATE with LMF3.0

[Liliana Caldeira]

Hello,

I solved the problem. LMF seems to be working...

Thank you so much.
Liliana

On Thu, Sep 18, 2008 at 3:22 PM, Liliana Caldeira <llcaldeira at gmail.com> wrote:
> Hello,
>
> Thank you so much for your help.
>
> My env_gate.sh is attached.
>
> My env varibles:
> G4BIN=./bin
> CLHEP_LIB_DIR=/sotao/llcaldeira/CLHEP/lib
> G4LEVELGAMMADATA=/sotao/llcaldeira/geant4.9.0.p02/data/PhotonEvaporation2.0
> GATE_USE_LMF=1
> SSH_AGENT_PID=26656
> HOSTNAME=messias-ibeb
> LMF_HOME=/sotao/llcaldeira/lmf_v3.0
> G4ANALYSIS_USE_NTUPLE=1
> G4INSTALL=/sotao/llcaldeira/geant4.9.0.p02
> DESKTOP_STARTUP_ID=
> SHELL=/bin/bash
> TERM=xterm
> HISTSIZE=1000
> GTK_RC_FILES=/etc/gtk/gtkrc:/home/llcaldeira/.gtkrc-1.2-gnome2
> G4INCLUDE=/sotao/llcaldeira/geant4.9.0.p02/include/
> WINDOWID=33554505
> OLDPWD=/sotao/llcaldeira
> G4VERSION=9.0
> G4LEDATA=/sotao/llcaldeira/geant4.9.0.p02/data/G4EMLOW5.1
> USER=llcaldeira
> G4ANALYSIS_USE_ROOT=1
> XMFLAGS=
> LD_LIBRARY_PATH=/sotao/llcaldeira/root/lib:/sotao/llcaldeira/CLHEP/lib:/sotao/ll
> caldeira/gate_v3.1.2/tmp/Linux-g++/Gate::/sotao/llcaldeira/geant4.9.0.p02/lib/Li
> nux-g++:/sotao/llcaldeira/CLHEP/lib
> LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;0
> 1:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.b
> tm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:
> *.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*
> .bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;3
> 5:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35:
> G4ANALYSIS_USE=1
> GATEHOME=/sotao/llcaldeira/gate_v3.1.2
> XMLIBS=
> G4NEUTRONHPDATA=/sotao/llcaldeira/geant4.9.0.p02/data/G4NDL3.12
> SSH_AUTH_SOCK=/tmp/ssh-Qsv26605/agent.26605
> G4VIS_BUILD_OPENGLX_DRIVER=1
> G4TMP=./tmp
> G4RADIOACTIVEDATA=/sotao/llcaldeira/geant4.9.0.p02/data/RadioactiveDecay3.2
> SESSION_MANAGER=local/messias-ibeb:/tmp/.ICE-unix/26605
> MAIL=/var/spool/mail/llcaldeira
> PATH=/sotao/llcaldeira/root/bin:/sotao/llcaldeira/gate_v3.1.2/bin/Linux-g++:/usr
> /kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/llcaldeira/bin:/
> home/llcaldeira/geant4/bin/Linux-g++
> G4LIB=/sotao/llcaldeira/geant4.9.0.p02/lib
> G4LIB_BUILD_SHARED=1
> INPUTRC=/etc/inputrc
> PWD=/sotao/llcaldeira/gate_v3.1.2
> XMODIFIERS=@im=none
> G4VERSION9=1
> G4LIB_BUILD_STATIC=1
> CLHEP_BASE_DIR=/sotao/llcaldeira/CLHEP
> LANG=en_US.UTF-8
> LAMHELPFILE=/etc/lam/lam-helpfile
> GATE_USE_OPTICAL=1
> GDMSESSION=Default
> G4VIS_USE_OPENGLX=1
> ROOTSYS=/sotao/llcaldeira/root
> SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
> KRB5CCNAME=FILE:/tmp/krb5cc_18582_5q1fRs
> G4ANALYSIS_USE_FILE=1
> G4UI_USE_TCSH=1
> CLHEP_INCLUDE_DIR=/sotao/llcaldeira/CLHEP/include
> HOME=/home/llcaldeira
> SHLVL=2
> G4SYSTEM=Linux-g++
> XAWLIBS=
> GNOME_DESKTOP_SESSION_ID=Default
> LOGNAME=llcaldeira
> G4WORKDIR=.
> LESSOPEN=|/usr/bin/lesspipe.sh %s
> GCONF_LOCAL_LOCKS=1
> DISPLAY=:0.0
> CLHEP_LIB=CLHEP
> XAWFLAGS=
> G_BROKEN_FILENAMES=1
> COLORTERM=gnome-terminal
> XAUTHORITY=/home/llcaldeira/.Xauthority
> _=/usr/bin/env
>
>
> On Thu, Sep 18, 2008 at 7:33 AM, Samuel BURG <samuel_burg at yahoo.fr> wrote:
>> Hello,
>>
>> it seams that you have an error in your gate environments variables.
>> Check your file (gate_env.sh) and post it here if your don't found the error.
>>
>> Best regards,
>>
>> Samuel Burg
>>
>>
>>
>> ----- Message d'origine ----
>> De : Liliana Caldeira <llcaldeira at gmail.com>
>> À : gate-users at lists.healthgrid.org
>> Envoyé le : Mercredi, 17 Septembre 2008, 18h19mn 13s
>> Objet : [Gate-users] GATE with LMF3.0
>>
>> Hello everyone!
>>
>> I'm having a strange problem with GATE. I installed GATE without LMF
>> and it was working.
>> After, i re-install GATE with LMF, exactly in the same directory. When
>> i ran the benchmarkPET, LMF output is working.
>> Until here no problem, but when i am in other directories it seems
>> that GATE is still running the old version without LMF, that is, GATE
>> doesn't have any command of LMF. But this version should no longer
>> exist, right?
>>
>> I don't know what can be the problem. How can i know which GATE binary
>> file is benchmarkPET running?
>>
>> (gate 3.1.2, root 5.14, geant4.9.0.p02 , CLHEP2.0.3.1)
>>
>> Thank you for your help,
>> Liliana Caldeira
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>>
>>
>>
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>