[gate-users] benchmarkPET

[Yun Dong]

Hi ross,

It's interesting; I'll try this. Thanks a lot.

Yun

----- Original Message -----
From: "Schmidtlein, Ross/Sloan-Kettering Institute" 
<schmidtr at mskcc.org>
Date: Thursday, March 24, 2005 2:56 pm
Subject: RE: [gate-users] benchmarkPET

> Hi Yun,
> 
> One last thought.  A long while back I had a really strange problem
> where a hidden character was in some of my mac files.  GATE would run
> and crash for no apparent reason.  I copied the old mac files to
> *.mac_old, opened them and cut and paste the contents into new files
> named *.mac.  This procedure removed the hidden characters and the 
mac
> files ran fine.  It's a long shot but it is easy to do.
> 
> ross
> 
> -----Original Message-----
> From: gate-users-bounces at lphe1pet1.epfl.ch
> [mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of Adam M.
> Alessio
> Sent: Thursday, March 24, 2005 2:44 PM
> To: GATE feedback and helpline for Users
> Subject: Re: [gate-users] benchmarkPET
> 
> 
> Yun,
> 
> I had a similar core dump issue (on a completely different system) 
> and 
> I narrowed down the problem to optimization flag settings used 
> with the 
> compiler.  If you still have these troubles, you may try compiling 
> GATE 
> with a different flag or no optimization.
> 
> Adam
> 
> --------------------------
> Adam Alessio                                	Division of Nuclear
> Medicine
> 206.598.4521                                	Dept. of Radiology
> aalessio at u.washington.edu        	University of Washington
> 
> 
> 
> On Mar 24, 2005, at 11:05 AM, Yun Dong wrote:
> 
> > Hi Ross,
> >
> > I exactly install every package with right order, and I could 
> run the 
> > novice examples coming with Geant4. Yesterday, I run the 
> simulation 
> > example in the Chapter 1 of GATEUserGuide document downloaded 
> from the
> 
> > internet; it look like being finished rightly.
> >
> > Thanks
> > Yun
> >
> > ----- Original Message -----
> > From: "Schmidtlein, Ross/Sloan-Kettering Institute" 
> > <schmidtr at mskcc.org>
> > Date: Thursday, March 24, 2005 11:19 am
> > Subject: RE: RE: [gate-users] benchmarkPET
> >
> >> Hi Fernando and Yun,
> >>
> >> The latest version of GATE v1.2.0 does run on Geant4.7.0p01.  I 
> have 
> >> recently compiled it and run the benchmark with no problems and 
> >> lookingat you system and version everything looks ok.  I am 
> pretty 
> >> sure that several people have run GATE on Fedora Core 1.
> >>
> >> I am assuming that you are installing the components in the 
> proper 
> >> order.
> >>
> >> CLHEP before Geant4
> >> Root and Geant4 before GATE.
> >>
> >> And that they each installed OK?
> >>
> >> The installation of Geant4 can be tricky.  I have attached an 
> old 
> >> document that is abit out of date but is still very useful.  
> See if 
> >> that helps.
> >>
> >> ross
> >>
> >> -----Original Message-----
> >> From: gate-users-bounces at lphe1pet1.epfl.ch
> >> [mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of 
> Fernando 
> >> Rannou
> >> Sent: Thursday, March 24, 2005 8:05 AM
> >> To: GATE feedback and helpline for Users
> >> Subject: Re: RE: [gate-users] benchmarkPET
> >>
> >>
> >> Hi,
> >> Does Gate run on Geant4.7.0.p01?
> >>
> >> Fernando
> >>
> >> On Thu, 2005-03-24 at 10:54 -0600, Yun Dong wrote:
> >>> Hi ross,
> >>>
> >>> They are
> >>> Fedora Core 1
> >>> gcc 3.3.2
> >>> Root 4.02,
> >>> CLHEP 1.8.1.0,
> >>> Geant4.7.0.p01
> >>> GATE1.2.0
> >>>
> >>> Do you have any idea? Thank you so much.
> >>>
> >>> Regards
> >>> Yun
> >>>
> >>> ----- Original Message -----
> >>> From: "Schmidtlein, Ross/Sloan-Kettering Institute" 
> >>> <schmidtr at mskcc.org>
> >>> Date: Thursday, March 24, 2005 10:08 am
> >>> Subject: RE: [gate-users] benchmarkPET
> >>>
> >>>> Hi Yun,
> >>>>
> >>>> That's not normal at all.  Gate typically uses very little 
memory
> >>> (<40
> >>>> Mb) unless using voxelized geometries.  What are your Linux,
> >> root,
> >>>> CLHEP, GATE, and Geant4 versions?
> >>>>
> >>>> ross
> >>>>
> >>>> -----Original Message-----
> >>>> From: gate-users-bounces at lphe1pet1.epfl.ch
> >>>> [mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of Yun
> >> Dong> > Sent: Thursday, March 24, 2005 10:52 AM
> >>>> To: gate-users at lphe1pet1.epfl.ch
> >>>> Subject: [gate-users] benchmarkPET
> >>>>
> >>>>
> >>>> Hi,
> >>>> Does anybody run successfully the example benchmarkPET coming
> > with
> >>>> GATE package. When I simulated this example, I had to set 
> very very
> >>>> huge swap space ~50G; but simulation always died with message
> >>>> "Aborted
> >>>> (core dumped)". The core file is about 2G. Are these
> >> situations
> >>>> normal? I'm a novice for GATE. It's grateful for any help for
> >> me.
> >>>> Thanks.
> >>>>
> >>>> Yun
> >>>> _______________________________________________
> >>>> gate-users mailing list
> >>>> gate-users at lphe1pet1.epfl.ch 
> >>>> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> >>>>
> >>>>
> >>>>
> >>>> _______________________________________________
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> >>>>
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> >>
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> >>
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