[gate-users] benchmarkPET

[Schmidtlein, Ross/Sloan-Kettering Institute]

Hi Yun,

One last thought.  A long while back I had a really strange problem
where a hidden character was in some of my mac files.  GATE would run
and crash for no apparent reason.  I copied the old mac files to
*.mac_old, opened them and cut and paste the contents into new files
named *.mac.  This procedure removed the hidden characters and the mac
files ran fine.  It's a long shot but it is easy to do.

ross

-----Original Message-----
From: gate-users-bounces at lphe1pet1.epfl.ch
[mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of Adam M.
Alessio
Sent: Thursday, March 24, 2005 2:44 PM
To: GATE feedback and helpline for Users
Subject: Re: [gate-users] benchmarkPET


Yun,

I had a similar core dump issue (on a completely different system) and 
I narrowed down the problem to optimization flag settings used with the 
compiler.  If you still have these troubles, you may try compiling GATE 
with a different flag or no optimization.

Adam

--------------------------
Adam Alessio					Division of Nuclear
Medicine
206.598.4521					Dept. of Radiology
aalessio at u.washington.edu		University of Washington



On Mar 24, 2005, at 11:05 AM, Yun Dong wrote:

> Hi Ross,
>
> I exactly install every package with right order, and I could run the 
> novice examples coming with Geant4. Yesterday, I run the simulation 
> example in the Chapter 1 of GATEUserGuide document downloaded from the

> internet; it look like being finished rightly.
>
> Thanks
> Yun
>
> ----- Original Message -----
> From: "Schmidtlein, Ross/Sloan-Kettering Institute" 
> <schmidtr at mskcc.org>
> Date: Thursday, March 24, 2005 11:19 am
> Subject: RE: RE: [gate-users] benchmarkPET
>
>> Hi Fernando and Yun,
>>
>> The latest version of GATE v1.2.0 does run on Geant4.7.0p01.  I have 
>> recently compiled it and run the benchmark with no problems and 
>> lookingat you system and version everything looks ok.  I am pretty 
>> sure that several people have run GATE on Fedora Core 1.
>>
>> I am assuming that you are installing the components in the proper 
>> order.
>>
>> CLHEP before Geant4
>> Root and Geant4 before GATE.
>>
>> And that they each installed OK?
>>
>> The installation of Geant4 can be tricky.  I have attached an old 
>> document that is abit out of date but is still very useful.  See if 
>> that helps.
>>
>> ross
>>
>> -----Original Message-----
>> From: gate-users-bounces at lphe1pet1.epfl.ch
>> [mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of Fernando 
>> Rannou
>> Sent: Thursday, March 24, 2005 8:05 AM
>> To: GATE feedback and helpline for Users
>> Subject: Re: RE: [gate-users] benchmarkPET
>>
>>
>> Hi,
>> Does Gate run on Geant4.7.0.p01?
>>
>> Fernando
>>
>> On Thu, 2005-03-24 at 10:54 -0600, Yun Dong wrote:
>>> Hi ross,
>>>
>>> They are
>>> Fedora Core 1
>>> gcc 3.3.2
>>> Root 4.02,
>>> CLHEP 1.8.1.0,
>>> Geant4.7.0.p01
>>> GATE1.2.0
>>>
>>> Do you have any idea? Thank you so much.
>>>
>>> Regards
>>> Yun
>>>
>>> ----- Original Message -----
>>> From: "Schmidtlein, Ross/Sloan-Kettering Institute" 
>>> <schmidtr at mskcc.org>
>>> Date: Thursday, March 24, 2005 10:08 am
>>> Subject: RE: [gate-users] benchmarkPET
>>>
>>>> Hi Yun,
>>>>
>>>> That's not normal at all.  Gate typically uses very little memory
>>> (<40
>>>> Mb) unless using voxelized geometries.  What are your Linux,
>> root,
>>>> CLHEP, GATE, and Geant4 versions?
>>>>
>>>> ross
>>>>
>>>> -----Original Message-----
>>>> From: gate-users-bounces at lphe1pet1.epfl.ch
>>>> [mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of Yun
>> Dong> > Sent: Thursday, March 24, 2005 10:52 AM
>>>> To: gate-users at lphe1pet1.epfl.ch
>>>> Subject: [gate-users] benchmarkPET
>>>>
>>>>
>>>> Hi,
>>>> Does anybody run successfully the example benchmarkPET coming
> with
>>>> GATE package. When I simulated this example, I had to set very very
>>>> huge swap space ~50G; but simulation always died with message
>>>> "Aborted
>>>> (core dumped)". The core file is about 2G. Are these
>> situations
>>>> normal? I'm a novice for GATE. It's grateful for any help for
>> me.
>>>> Thanks.
>>>>
>>>> Yun
>>>> _______________________________________________
>>>> gate-users mailing list
>>>> gate-users at lphe1pet1.epfl.ch 
>>>> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> gate-users mailing list
>>>> gate-users at lphe1pet1.epfl.ch 
>>>> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
>>>>
>>> _______________________________________________
>>> gate-users mailing list
>>> gate-users at lphe1pet1.epfl.ch 
>>> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
>>
>> _______________________________________________
>> gate-users mailing list
>> gate-users at lphe1pet1.epfl.ch 
>> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
>>
>>
> _______________________________________________
> gate-users mailing list
> gate-users at lphe1pet1.epfl.ch 
> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> _______________________________________________
> gate-users mailing list
> gate-users at lphe1pet1.epfl.ch 
> http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
>

_______________________________________________
gate-users mailing list
gate-users at lphe1pet1.epfl.ch
http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users