[gate-users] Running GATE in batch mode

[Mutanga Theodore]

Greetings ,

I just tried to run GATE in batch mode and I got an error from the job
output file;

test.err
-------------
Gate: relocation error: Gate: undefined symbol: __ti5TTree


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Here is the script I used in submitting the job to the cluster.

************************************
#!/bin/sh
### SNAC project number, enter if applicable.
### NOTE! No spaces or slashes allowed
###PBS -A SNICXXX-YY-ZZ
### Job name - defaults to name of submit script
#PBS -N gate_test
### Output files - defaults to jobname.[eo]jobnumber
#PBS -o test.out
#PBS -e test.err
### Mail on - a=abort, b=beginning, e=end - defaults to a
#PBS -m ae
### Number of nodes - defaults to 1:1
### Requesting 1 nodes with 2 VP:s on each node
#PBS -l nodes=1:ppn=2
### Requesting time - 30 minutes - defaults to
#PBS -l walltime=09:30:00

# Change to Working Directory
cd $PBS_O_WORKDIR
# Serial job
# No matter how many processers you request this job will run
# on _only_ one node. Though you should be alone on it.

source /kfs/home/m/muathe02/gate_v1.0.2/env_gate.sh
Gate < benchmarkPET.mac

*********************************************************

The paths in the file points to where Gate is installed and the
env_gate.sh script sets all the environmental variables and paths GATE
needs.

Does anyone know what that means ? The job ran for about 3 seconds and
then stopped.
Can someone send me a copy of any scripts with which they use to submit
batch jobs ? I just want to see how it is done.

Also concerning my last posts ,I found out how to analyze the
bencmark.root file with the benchmark.C file. now my installation is
validated ! what I need now is to be able to do some batch jobs on the
cluster.

Regards

Theodore