[Gate-users] Running Gate on a Cluster using GateTools 'gate_split_and_run.py' Script

Thomas BAUDIER thomas.baudier at creatis.insa-lyon.fr
Mon Feb 28 10:54:55 CET 2022


Hello Mijat,

With gate_split_and_run.py, the macros are copied inside the output 
folder. It worked on my computer. Could you try to update the gatetools 
inside /home/vgate/Desktop/GateTools-master or remove output option (-o) 
please ?

Thank you
Thomas

On 26/02/2022 16:21, Mijat Paunovic wrote:
> Dear Gate Community,
> I am trying to run my Gate script with Python script 
> 'gate_split_and_run.py' from GateTools but I get an error message that 
> says that my script was not able to be found. A detailed 
> explanation follows.
>
> I am running a Python script with the following command:
> /python3 
> /home/vgate/Desktop/GateTools-master/clustertools////gate_split_and_run.py 
> //home/vgate/Desktop/master/mac/main.mac -o 
> /home/vgate/Desktop/master/cluster/
> /
> /
> This is what I get in the terminal (complete terminal output is in the 
> /troubleshooting.txt/ attachment):
>
> /[Core-0] Starting macro /home/vgate/Desktop/master/cluster/mac/main.mac
> [G4-cerr] ERROR: Can not open a macro file 
> </home/vgate/Desktop/master/cluster/mac/main.mac>. Set macro path with 
> "/control/macroPath" if needed.
> [Gate] Sorry, error in a macro command : abort.
> ERROR: gate failed/
> /
> /
> This looks to me like a /path/ problem so I changed all the paths in 
> my Gate script to absolute paths. The problem remained the same.
>
> Note: At the moment, I am just trying to run Gate on the 4 CPUs that I 
> provided to VirtualBox but I plan on using it on a Unix cluster soon.
>
> Kind regards,
> Mijat Paunovic
> /
> /
> /
> /
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20220228/d252d8e1/attachment.html>


More information about the Gate-users mailing list