[Gate-users] problem with voxelized mouse phantom
Sarah Blind
sarah.blind at univ-lorraine.fr
Mon Apr 25 11:27:51 CEST 2022
Dear Gate users,
I'm trying to use the mouse phantom from [ https://neuroimage.usc.edu/neuro/Digimouse_Download | https://neuroimage.usc.edu/neuro/Digimouse_Download ] .
So I have my phantom of the form mouse.hdr , mouse.img and here is my code:
1. I name my phantom, open the file and choose the algorithm to track particles from voxel to voxel
2. I convert my image grayscales into material definitions with an units to materials conversion descriptor
/gate/world/daughters/name mouse
/gate/world/daughters/insert ImageRegularParametrisedVolume
/gate/mouse/geometry/setImage ../data/mouse.hdr
/gate/HounsfieldMaterialGenerator/SetMaterialTable ../data/Schneider2000MaterialsTable.txt
/gate/HounsfieldMaterialGenerator/SetDensityTable ../data/Schneider2000DensitiesTable.txt
/gate/HounsfieldMaterialGenerator/SetDensityTolerance 0.1 g/cm3
/gate/HounsfieldMaterialGenerator/SetOutputMaterialDatabaseFilename ../data/patient-HUmaterials.db
/gate/HounsfieldMaterialGenerator/SetOutputHUMaterialFilename ../data/patient-HU2mat.txt
I get the following error message
BQ_BEGIN
GateVImageVolume.cc (l.739): I find R=0 in the image, while range stop at -1
### WARNING ### setSkipEqualMaterials at false !! The Geant4 method is not safe since the release 9.5 - Need to be fixed
Error opening file.
BQ_END
Does someone has an idea how to solve this problem ?
Thank you in advance for your help,
Regards,
Sarah Blind
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