[Gate-users] Gate-users Digest, Vol 187, Issue 23

Anes Mohammed anes.m.s.q at gmail.com
Fri Dec 31 10:21:44 CET 2021 

On Sun, 26 Dec 2021, 09:34 Anes Mohammed, <anes.m.s.q at gmail.com> wrote:

> Dear Mr.Konstantinos thank you so much for your help. I solved some of
> these problems, but now I have a new error in my code. the error in
> attached image. Do you know any idea about it?
>
> On Thu, 23 Dec 2021, 13:29 , <
> gate-users-request at lists.opengatecollaboration.org> wrote:
>
>> Send Gate-users mailing list submissions to
>>         gate-users at lists.opengatecollaboration.org
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>>
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> or, via email, send a message with subject or body 'help' to
>>         gate-users-request at lists.opengatecollaboration.org
>>
>> You can reach the person managing the list at
>>         gate-users-owner at lists.opengatecollaboration.org
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of Gate-users digest..."
>>
>>
>> Today's Topics:
>>
>>    1. addsource (Anes Mohammed)
>>    2. Re: addsource (Konstantinos P. Chatzipapas)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Wed, 22 Dec 2021 21:37:51 +0300
>> From: Anes Mohammed <anes.m.s.q at gmail.com>
>> To: gate-users <gate-users at lists.opengatecollaboration.org>
>> Subject: [Gate-users] addsource
>> Message-ID:
>>         <
>> CAPNYzOZNntNxVv+Necq+QKkObUktPQoJ-TH4uVpaTGM+-B5B2g at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Dear Gate User's
>> when I  implementation of the attached cod
>>
>> #==============================================================================================
>> # Visualization
>>
>> #==============================================================================================
>> /vis/open                             OGLSQt
>> /vis/viewer/set/background black
>> /vis/drawVolume
>> /vis/viewer/flush
>> /vis/viewer/set/viewpointThetaPhi 60 30
>> /vis/viewer/zoom 10
>> /tracking/storeTrajectory             1
>> /vis/scene/add/trajectories
>> /vis/scene/endOfEventAction           accumulate -1
>> /vis/scene/add/axes
>> /gate/verbose Physic    0
>> /gate/verbose Cuts      0
>> /gate/verbose SD        0
>> /gate/verbose Actions   0
>> /gate/verbose Actor     0
>> /gate/verbose Step      0
>> /gate/verbose Error     1
>> /gate/verbose Warning   0
>> /gate/verbose Output    0
>> /gate/verbose Beam      0
>> /gate/verbose Volume    0
>> /gate/verbose Image     0
>> /gate/verbose Geometry  0
>> /gate/verbose Core      0
>>
>> /run/verbose 0
>> /event/verbose 0
>> /tracking/verbose 0
>>
>>
>>
>> #==============================================================================================
>> # Materials
>>
>> #==============================================================================================
>>
>> /gate/geometry/setMaterialDatabase    data/GateMaterials.db
>>
>>
>> #==============================================================================================
>> # Geometry (world)
>>
>> #==============================================================================================
>> # G E O M E T R Y
>> #####
>>
>> # World
>>
>> /gate/world/geometry/setXLength 100 cm
>> /gate/world/geometry/setYLength 100 cm
>> /gate/world/geometry/setZLength 100 cm
>> /gate/world/vis/setColor red
>> /gate/world/vis/forceWireframe
>> /gate/world/describe
>> # Scanner Head
>> /gate/world/daughters/name SPECThead
>> /gate/world/daughters/insert box
>> /gate/SPECThead/geometry/setXLength  7. cm
>> /gate/SPECThead/geometry/setYLength 21. cm
>> /gate/SPECThead/geometry/setZLength 30. cm
>> #Distance bettween SPECThead box##
>> /gate/SPECThead/placement/setTranslation  22.0 0. 0. cm
>> /gate/SPECThead/setMaterial Air
>>
>> /gate/SPECThead/placement/setRotationAxis 0 0 1
>> /gate/SPECThead/placement/setRotationAngle 180 deg
>> /gate/SPECThead/vis/forceWireframe
>>
>>
>> # Shielding
>> /gate/SPECThead/daughters/name shielding
>> /gate/SPECThead/daughters/insert box
>> /gate/shielding/geometry/setXLength  7. cm
>> /gate/shielding/geometry/setYLength 21. cm
>> /gate/shielding/geometry/setZLength 30. cm
>> /gate/shielding/placement/setTranslation  0. 0. 0. cm
>> /gate/shielding/setMaterial Lead
>> /gate/shielding/vis/setColor grey
>> /gate/shielding/vis/forceSolid
>> # Collimator
>> /gate/SPECThead/daughters/name collimator
>> /gate/SPECThead/daughters/insert box
>> /gate/collimator/geometry/setXLength 3. cm
>> /gate/collimator/geometry/setYLength 19. cm
>> /gate/collimator/geometry/setZLength 28. cm
>> #the loction of collimator relative to y-axes##
>> /gate/collimator/placement/setTranslation  -2. 0. 0. cm
>> /gate/collimator/setMaterial Lead
>> /gate/collimator/vis/setColor red
>> /gate/collimator/vis/forceWireframe
>> /gate/collimator/describe
>> /gate/collimator/daughters/name hole
>> /gate/collimator/daughters/insert hexagone
>> /gate/hole/geometry/setHeight 3. cm
>> /gate/hole/geometry/setRadius .01 cm
>> /gate/hole/placement/setRotationAxis 0  0  1
>> /gate/hole/placement/setRotationAngle 90 deg
>> /gate/hole/setMaterial Air
>> #
>> # Repeat the hole in an array
>> ##
>> /gate/hole/repeaters/insert cubicArray
>> /gate/hole/cubicArray/setRepeatNumberX 1
>> /gate/hole/cubicArray/setRepeatNumberY 52
>> /gate/hole/cubicArray/setRepeatNumberZ 44
>> /gate/hole/cubicArray/setRepeatVector 0. 0.36  0.624 cm
>> #
>> # Repeat these holes in a linear
>> ##
>> /gate/hole/repeaters/insert linear
>> /gate/hole/linear/setRepeatNumber 2
>> /gate/hole/linear/setRepeatVector 0. 0.18 0.312 cm
>>
>>
>> # CRYSTAL
>> /gate/SPECThead/daughters/name crystal
>> /gate/SPECThead/daughters/insert box
>> /gate/crystal/geometry/setXLength 1. cm
>> /gate/crystal/geometry/setYLength  19. cm
>> /gate/crystal/geometry/setZLength  28. cm
>> /gate/crystal/placement/setTranslation  0. 0. 0. cm
>> /gate/crystal/setMaterial NaI
>> /gate/crystal/vis/setColor yellow
>>
>> # BACK-COMPARTMENT
>> /gate/SPECThead/daughters/name compartment
>> /gate/SPECThead/daughters/insert box
>> /gate/compartment/geometry/setXLength 2.5 cm
>> /gate/compartment/geometry/setYLength 19. cm
>> /gate/compartment/geometry/setZLength 28. cm
>> /gate/compartment/placement/setTranslation   1.75 0. 0. cm
>> /gate/compartment/setMaterial Glass
>> /gate/compartment/vis/setColor grey
>>
>> # TABLE
>> /gate/world/daughters/name table
>> /gate/world/daughters/insert box
>> /gate/table/geometry/setXLength 40 cm
>> /gate/table/geometry/setYLength 4. cm
>> /gate/table/geometry/setZLength 40. cm
>> /gate/table/placement/setRotationAxis 0 1 0
>> /gate/table/placement/setRotationAngle 90 deg
>> /gate/table/placement/setTranslation  0. -14.9 0. cm
>> /gate/table/setMaterial  Polystyrene
>> /gate/table/vis/setColor white
>> /gate/table/vis/forceSolid
>>
>> # PHANTOM
>> /gate/world/daughters/name Phantom
>> /gate/world/daughters/insert box
>> /gate/Phantom/geometry/setXLength 30.  cm
>> /gate/Phantom/geometry/setYLength 30. cm
>> /gate/Phantom/geometry/setZLength 30. cm
>> /gate/Phantom/placement/setTranslation 0. 0. 0. cm
>> /gate/Phantom/setMaterial Water
>> /gate/Phantom/vis/setColor blue
>> /gate/Phantom/vis/forceWireframe
>> # S Y S T E M
>> ######
>> /gate/systems/SPECThead/crystal/attach crystal
>> /gate/systems/SPECThead/describe
>> # S E N S I T I V E   D E T E C T O R S
>> /gate/crystal/attachCrystalSD
>>
>> # Phantom SD
>> /gate/Phantom/attachPhantomSD
>> /gate/table/attachPhantomSD
>> /gate/compartment/attachPhantomSD
>> /gate/shielding/attachPhantomSD
>> /gate/SPECThead/attachPhantomSD
>> /gate/collimator/attachPhantomSD
>>
>> #  P H Y S I C S
>> #####
>> /gate/physics/addProcess PhotoElectric
>> /gate/physics/processes/PhotoElectric/setModel StandardModel
>>
>> /gate/physics/addProcess Compton
>> /gate/physics/processes/Compton/setModel PenelopeModel
>>
>> /gate/physics/addProcess RayleighScattering
>> /gate/physics/processes/RayleighScattering/setModel PenelopeModel
>>
>> /gate/physics/addProcess ElectronIonisation
>> /gate/physics/processes/ElectronIonisation/setModel StandardModel e-
>>
>> /gate/physics/addProcess Bremsstrahlung
>> /gate/physics/processes/Bremsstrahlung/setModel StandardModel e-
>>
>> /gate/physics/addProcess MultipleScattering e-
>>
>> /gate/physics/processList Enabled
>> /gate/physics/processList Initialized
>>
>> #  C U T S
>> #####
>> /gate/physics/Gamma/SetCutInRegion      SPECThead 0.1 cm
>> /gate/physics/Electron/SetCutInRegion   SPECThead 1.0 cm
>> # Source 1
>> /gate/source/addSource mySource_1
>> /gate/source/mySource_1/gps/type Volume
>> /gate/source/mySource_1/gps/shape Cylinder
>> /gate/source/mySource_1/gps/radius 0.5 mm
>> /gate/source/mySource_1/gps/halfz 100 mm
>> /gate/source/mySource_1/gps/centre 0. 0. 0. cm
>> /gate/source/mySource_1/gps/particle gamma
>> /gate/source/mySource_1/gps/energy 140. keV
>>
>> #  1 MBq
>> #/gate/source/mySource_1/setActivity 1000000 Bq
>> /gate/source/mySource_1/setActivity 1 Bq
>> # Emission angle: isotropic
>> /gate/source/mySource_1/gps/angtype iso
>> /gate/source/list
>> #====================================================
>> #DATA OUTPUT
>> #===================================================
>> /gate/output/allowNoOutput
>>
>>
>> #=====================================================
>> # START BEAMS
>> #=====================================================
>>
>>
>> /gate/random/setEngineName MersenneTwister
>> /gate/random/setEngineSeed auto
>> #/gate/application/setTotalNumberOfPrimaries 100000
>> /gate/application/start
>>
>>
>>
>>
>>
>> #==============================================================================================
>> # Initialisation
>>
>> #==============================================================================================
>>
>> /gate/run/initialize
>>
>> #==============================================================================================
>> # Main program
>>
>> #==============================================================================================
>>
>> #/gate/output/allowNoOutput
>>
>> /gate/application/setTotalNumberOfPrimaries 1
>> /gate/application/start
>>
>> This error appear for me
>> ***** Illegal application state </gate/source/addSource mySource_1> *****
>> ***** Batch is interrupted!! *****
>>
>> thanks for your help
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL: <
>> http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20211222/404b6621/attachment-0001.html
>> >
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Thu, 23 Dec 2021 10:20:27 +0000 (UTC)
>> From: "Konstantinos P. Chatzipapas" <konhat88 at yahoo.gr>
>> To: gate-users <gate-users at lists.opengatecollaboration.org>,  Anes
>>         Mohammed <anes.m.s.q at gmail.com>
>> Subject: Re: [Gate-users] addsource
>> Message-ID: <1003764488.1333227.1640254827686 at mail.yahoo.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hello Anes,
>> A first problem with your code is that /gate/run/initialize   should not
>> be in the end. It must be before the source definition. To be accurate,
>> before these lines: # Source 1/gate/source/addSource mySource_1
>>
>> Regards,Konstantinos----------------------------------------------------- Konstantinos
>> Chatzipapas
>>     Medical Physicist, Ph.D.
>>         University of Patras
>>
>>
>>     Στις Τετάρτη, 22 Δεκεμβρίου 2021, 08:43:15 μ.μ. EET, ο χρήστης Anes
>> Mohammed <anes.m.s.q at gmail.com> έγραψε:
>>
>>  Dear Gate User's
>> when I implementation of the attached
>> cod#==============================================================================================
>> # Visualization
>>
>> #==============================================================================================
>> /vis/open                             OGLSQt
>> /vis/viewer/set/background black
>> /vis/drawVolume
>> /vis/viewer/flush
>> /vis/viewer/set/viewpointThetaPhi 60 30
>> /vis/viewer/zoom 10
>> /tracking/storeTrajectory             1
>> /vis/scene/add/trajectories
>> /vis/scene/endOfEventAction           accumulate -1
>> /vis/scene/add/axes
>> /gate/verbose Physic    0
>> /gate/verbose Cuts      0
>> /gate/verbose SD        0
>> /gate/verbose Actions   0
>> /gate/verbose Actor     0
>> /gate/verbose Step      0
>> /gate/verbose Error     1
>> /gate/verbose Warning   0
>> /gate/verbose Output    0
>> /gate/verbose Beam      0
>> /gate/verbose Volume    0
>> /gate/verbose Image     0
>> /gate/verbose Geometry  0
>> /gate/verbose Core      0
>>
>> /run/verbose 0
>> /event/verbose 0
>> /tracking/verbose 0
>>
>>
>>
>> #==============================================================================================
>> # Materials
>>
>> #==============================================================================================
>>
>> /gate/geometry/setMaterialDatabase    data/GateMaterials.db
>>
>>
>> #==============================================================================================
>> # Geometry (world)
>>
>> #==============================================================================================
>> # G E O M E T R Y
>> #####
>>
>> # World
>>
>> /gate/world/geometry/setXLength 100 cm
>> /gate/world/geometry/setYLength 100 cm
>> /gate/world/geometry/setZLength 100 cm
>> /gate/world/vis/setColor red
>> /gate/world/vis/forceWireframe
>> /gate/world/describe
>> # Scanner Head
>> /gate/world/daughters/name SPECThead
>> /gate/world/daughters/insert box
>> /gate/SPECThead/geometry/setXLength  7. cm
>> /gate/SPECThead/geometry/setYLength 21. cm
>> /gate/SPECThead/geometry/setZLength 30. cm
>> #Distance bettween SPECThead box##
>> /gate/SPECThead/placement/setTranslation  22.0 0. 0. cm
>> /gate/SPECThead/setMaterial Air
>>
>> /gate/SPECThead/placement/setRotationAxis 0 0 1
>> /gate/SPECThead/placement/setRotationAngle 180 deg
>> /gate/SPECThead/vis/forceWireframe
>>
>>
>> # Shielding
>> /gate/SPECThead/daughters/name shielding
>> /gate/SPECThead/daughters/insert box
>> /gate/shielding/geometry/setXLength  7. cm
>> /gate/shielding/geometry/setYLength 21. cm
>> /gate/shielding/geometry/setZLength 30. cm
>> /gate/shielding/placement/setTranslation  0. 0. 0. cm
>> /gate/shielding/setMaterial Lead
>> /gate/shielding/vis/setColor grey
>> /gate/shielding/vis/forceSolid
>> # Collimator
>> /gate/SPECThead/daughters/name collimator
>> /gate/SPECThead/daughters/insert box
>> /gate/collimator/geometry/setXLength 3. cm
>> /gate/collimator/geometry/setYLength 19. cm
>> /gate/collimator/geometry/setZLength 28. cm
>> #the loction of collimator relative to y-axes##
>> /gate/collimator/placement/setTranslation  -2. 0. 0. cm
>> /gate/collimator/setMaterial Lead
>> /gate/collimator/vis/setColor red
>> /gate/collimator/vis/forceWireframe
>> /gate/collimator/describe
>> /gate/collimator/daughters/name hole
>> /gate/collimator/daughters/insert hexagone
>> /gate/hole/geometry/setHeight 3. cm
>> /gate/hole/geometry/setRadius .01 cm
>> /gate/hole/placement/setRotationAxis 0  0  1
>> /gate/hole/placement/setRotationAngle 90 deg
>> /gate/hole/setMaterial Air
>> #
>> # Repeat the hole in an array
>> ##
>> /gate/hole/repeaters/insert cubicArray
>> /gate/hole/cubicArray/setRepeatNumberX 1
>> /gate/hole/cubicArray/setRepeatNumberY 52
>> /gate/hole/cubicArray/setRepeatNumberZ 44
>> /gate/hole/cubicArray/setRepeatVector 0. 0.36  0.624 cm
>> #
>> # Repeat these holes in a linear
>> ##
>> /gate/hole/repeaters/insert linear
>> /gate/hole/linear/setRepeatNumber 2
>> /gate/hole/linear/setRepeatVector 0. 0.18 0.312 cm
>>
>>
>> # CRYSTAL
>> /gate/SPECThead/daughters/name crystal
>> /gate/SPECThead/daughters/insert box
>> /gate/crystal/geometry/setXLength 1. cm
>> /gate/crystal/geometry/setYLength  19. cm
>> /gate/crystal/geometry/setZLength  28. cm
>> /gate/crystal/placement/setTranslation  0. 0. 0. cm
>> /gate/crystal/setMaterial NaI
>> /gate/crystal/vis/setColor yellow
>>
>> # BACK-COMPARTMENT
>> /gate/SPECThead/daughters/name compartment
>> /gate/SPECThead/daughters/insert box
>> /gate/compartment/geometry/setXLength 2.5 cm
>> /gate/compartment/geometry/setYLength 19. cm
>> /gate/compartment/geometry/setZLength 28. cm
>> /gate/compartment/placement/setTranslation   1.75 0. 0. cm
>> /gate/compartment/setMaterial Glass
>> /gate/compartment/vis/setColor grey
>>
>> # TABLE
>> /gate/world/daughters/name table
>> /gate/world/daughters/insert box
>> /gate/table/geometry/setXLength 40 cm
>> /gate/table/geometry/setYLength 4. cm
>> /gate/table/geometry/setZLength 40. cm
>> /gate/table/placement/setRotationAxis 0 1 0
>> /gate/table/placement/setRotationAngle 90 deg
>> /gate/table/placement/setTranslation  0. -14.9 0. cm
>> /gate/table/setMaterial  Polystyrene
>> /gate/table/vis/setColor white
>> /gate/table/vis/forceSolid
>>
>> # PHANTOM
>> /gate/world/daughters/name Phantom
>> /gate/world/daughters/insert box
>> /gate/Phantom/geometry/setXLength 30.  cm
>> /gate/Phantom/geometry/setYLength 30. cm
>> /gate/Phantom/geometry/setZLength 30. cm
>> /gate/Phantom/placement/setTranslation 0. 0. 0. cm
>> /gate/Phantom/setMaterial Water
>> /gate/Phantom/vis/setColor blue
>> /gate/Phantom/vis/forceWireframe
>> # S Y S T E M
>> ######
>> /gate/systems/SPECThead/crystal/attach crystal
>> /gate/systems/SPECThead/describe
>> # S E N S I T I V E   D E T E C T O R S
>> /gate/crystal/attachCrystalSD
>>
>> # Phantom SD
>> /gate/Phantom/attachPhantomSD
>> /gate/table/attachPhantomSD
>> /gate/compartment/attachPhantomSD
>> /gate/shielding/attachPhantomSD
>> /gate/SPECThead/attachPhantomSD
>> /gate/collimator/attachPhantomSD
>>
>> #  P H Y S I C S
>> #####
>> /gate/physics/addProcess PhotoElectric
>> /gate/physics/processes/PhotoElectric/setModel StandardModel
>>
>> /gate/physics/addProcess Compton
>> /gate/physics/processes/Compton/setModel PenelopeModel
>>
>> /gate/physics/addProcess RayleighScattering
>> /gate/physics/processes/RayleighScattering/setModel PenelopeModel
>>
>> /gate/physics/addProcess ElectronIonisation
>> /gate/physics/processes/ElectronIonisation/setModel StandardModel e-
>>
>> /gate/physics/addProcess Bremsstrahlung
>> /gate/physics/processes/Bremsstrahlung/setModel StandardModel e-
>>
>> /gate/physics/addProcess MultipleScattering e-
>>
>> /gate/physics/processList Enabled
>> /gate/physics/processList Initialized
>>
>> #  C U T S
>> #####
>> /gate/physics/Gamma/SetCutInRegion      SPECThead 0.1 cm
>> /gate/physics/Electron/SetCutInRegion   SPECThead 1.0 cm
>> # Source 1
>> /gate/source/addSource mySource_1
>> /gate/source/mySource_1/gps/type Volume
>> /gate/source/mySource_1/gps/shape Cylinder
>> /gate/source/mySource_1/gps/radius 0.5 mm
>> /gate/source/mySource_1/gps/halfz 100 mm
>> /gate/source/mySource_1/gps/centre 0. 0. 0. cm
>> /gate/source/mySource_1/gps/particle gamma
>> /gate/source/mySource_1/gps/energy 140. keV
>>
>> #  1 MBq
>> #/gate/source/mySource_1/setActivity 1000000 Bq
>> /gate/source/mySource_1/setActivity 1 Bq
>> # Emission angle: isotropic
>> /gate/source/mySource_1/gps/angtype iso
>> /gate/source/list
>> #====================================================
>> #DATA OUTPUT
>> #===================================================
>> /gate/output/allowNoOutput
>>
>>
>> #=====================================================
>> # START BEAMS
>> #=====================================================
>>
>>
>> /gate/random/setEngineName MersenneTwister
>> /gate/random/setEngineSeed auto
>> #/gate/application/setTotalNumberOfPrimaries 100000
>> /gate/application/start
>>
>>
>>
>>
>>
>> #==============================================================================================
>> # Initialisation
>>
>> #==============================================================================================
>>
>> /gate/run/initialize
>>
>> #==============================================================================================
>> # Main program
>>
>> #==============================================================================================
>>
>> #/gate/output/allowNoOutput
>>
>> /gate/application/setTotalNumberOfPrimaries 1
>> /gate/application/start
>> This error appear for me
>> ***** Illegal application state </gate/source/addSource mySource_1> *****
>> ***** Batch is interrupted!! *****
>> thanks for your help
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL: <
>> http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20211223/1890fc5f/attachment.html
>> >
>>
>> ------------------------------
>>
>> Subject: Digest Footer
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>> ------------------------------
>>
>> End of Gate-users Digest, Vol 187, Issue 23
>> *******************************************
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20211231/12e4a236/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: IMG_20211226_085752.jpg
Type: image/jpeg
Size: 5823692 bytes
Desc: not available
URL: <http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20211231/12e4a236/attachment-0001.jpg>

More information about the Gate-users mailing list