[Gate-users] Question about the Thermal Actor and ITK

[Simon Rit]

This is just a warning, and a quick google search indicates that you can
probably ignore it, see, e.g., here
<https://stackoverflow.com/questions/48392440/git-lfs-clone-vs-git-clone>.
Did it solve your issue?

On Tue, Apr 21, 2020 at 4:11 PM Somayeh Asadi <somayeh.asadi at polimi.it>
wrote:

> Dear Simon
> I really appreciate your help and your time. I tried to do what you said.
> Following the instructor in this link"
>
> readme.md <https://github.com/OpenGATE/GateContrib/blob/master/readme.md>
> I have started to download the git, in the terminal I took this message is
> it matter or not?
> Warning"
> git lfs clone' is deprecated and will not be updated with new flags from
> 'git clone'
>
>
> *Somayeh Asadi (PhD)*
> *Postdoctoral Researcher *
> *Department of Mechanical Engineering*
> *Politecnico di Milano, Italy*
>
> Via Giuseppe La Masa,1
> 20156 - Milano - Italy
> phone: +39 0223998572
>
> somayeh.asadi at polimi.it
>
> ------------------------------
> *From:* Simon Rit <simon.rit at creatis.insa-lyon.fr>
> *Sent:* Tuesday, April 21, 2020 3:51 PM
> *To:* Somayeh Asadi <somayeh.asadi at polimi.it>
> *Cc:* gate-users at lists.opengatecollaboration.org <
> gate-users at lists.opengatecollaboration.org>
> *Subject:* Re: [Gate-users] Question about the Thermal Actor and ITK
>
> I provided the link to readme.md
> <https://github.com/OpenGATE/GateContrib/blob/master/readme.md>! It's the
> first page on the github repository and it's always a good idea to read it
> first (hence the name). So delete your GateContrib, install git-lfs and
> clone the repository.
>
> On Tue, Apr 21, 2020 at 3:45 PM Somayeh Asadi <somayeh.asadi at polimi.it>
> wrote:
>
> Dear Simon
> Thank you very much for your prompt response and a very good idea.
> When I installed the Gate in the GateContrib-master folder there were
> different examples for dosimetry, imaging...., It was a ready written
> program and there was no Readme.txt file inside.
> I think you right but I don't know where I find this file from and install
> in the related path for Thermal.
> Could you please guide me in this regard.
> I would be so grateful if you provide me with your guidance.
>
> Best
>
>
>
> GateContrib-master
>
> *Somayeh Asadi (PhD)*
> *Postdoctoral Researcher *
> *Department of Mechanical Engineering*
> *Politecnico di Milano, Italy*
>
> Via Giuseppe La Masa,1
> 20156 - Milano - Italy
> phone: +39 0223998572
>
> somayeh.asadi at polimi.it
>
> ------------------------------
> *From:* Simon Rit <simon.rit at creatis.insa-lyon.fr>
> *Sent:* Tuesday, April 21, 2020 3:32 PM
> *To:* Somayeh Asadi <somayeh.asadi at polimi.it>
> *Cc:* gate-users at lists.opengatecollaboration.org <
> gate-users at lists.opengatecollaboration.org>
> *Subject:* Re: [Gate-users] Question about the Thermal Actor and ITK
>
> Hi,
> Have you installed git-lfs first (see readme.md
> <https://github.com/OpenGATE/GateContrib/blob/master/readme.md>)? Because
> it looks like it cannot read the file and if output/Mobydose-AbsorptionMap.mhd
> is there, maybe output/Mobydose-AbsorptionMap.raw isn't because you have
> not installed git-lfs.
> Simon
>
> On Tue, Apr 21, 2020 at 3:25 PM Somayeh Asadi <somayeh.asadi at polimi.it>
> wrote:
>
>
> *Dear Gate User *
> *For the ready program related to thermal therapy with the name of
> thermaltherapy.mac in the folder of Imaging/Thermal in the subfolder of
> GateContrib-master, there is an error that seems to be related to ITK.*
> *the error is:*
> terminate called after throwing an instance of
> 'itk::ImageFileReaderException'
>   what():
> /home/BuildFiles/ITK/InsightToolkit-5.0.0-Source/Modules/IO/ImageBase/include/itkImageFileReader.hxx:136:
>  Could not create IO object for reading file
> output/Mobydose-AbsorptionMap.mhd
>   Tried to create one of the following:
>     GDCMImageIO
>   You probably failed to set a file suffix, or
>     set the suffix to an unsupported type.
> Aborted (core dumped)
>
> *I have downloaded and tried the ITK both the versions of 5.0.1 and 14.2,
> but after compiling the Gate with them I get the error. *
> *For downloading the ITK, I use this link:*
>
> *https://itk.org/download/ <https://itk.org/download/> *
> *I have recently check it with the ITK version 4.13.2 but I couldn't
> download all the related files.*
> *Has any person had the same problem and experience with the thermal
> actor?*
> *Has any person used the ITK version 5 and work with the thermal actor in
> which he/she didn't get any error?*
>
> *Thank you very much for your time and any suggestion. *
>
>
>
>
> *Somayeh Asadi (PhD)*
> *Postdoctoral Researcher *
> *Department of Mechanical Engineering*
> *Politecnico di Milano, Italy*
>
> Via Giuseppe La Masa,1
> 20156 - Milano - Italy
> phone: +39 0223998572
>
> somayeh.asadi at polimi.it
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200421/ef54b27c/attachment-0001.html>