[Gate-users] Easy Gate Installation

Sun Jan 27 18:25:27 CET 2019

Hello Assen,

To better understand the problem :
What is your Linux distribution ?
Did you get any error during the installation ?
When you have Gate is it version 8.1 or a previous installed version?

Best regards,

Alexandre

Le jeu. 24 janv. 2019 à 23:14, <kirova at mskcc.org> a écrit :

> Hi Alexandre,
>
>
>
> Thank you so much for the prompt response!
>
>
>
>    1. The .mac script runs well on a different installation.  It is just
>    a simple geometry with three materials and a histogram defined source.
>
> So we don’t open any files. The error seems to be that during the
> initialization
>
> GateImageT.icc (l.75): tries to open a file different from
>
> .vox, .hdr, .img, .mhd, .mha, .h33, .i33, .dcm :
>
>
>
> “PreInit> /gate/run/initialize
>
> …
>
> [Core-0] Initialization of actors
>
> GateImageT.icc (l.75): Unknown image file extension. Supported extensions
> are :
>
> .vox, .hdr, .img, .mhd, .mha, .h33, .i33, .dcm”
>
>
>
>    1. The source-gatev8.1 alias could not run for us after running the
>    installation script.
>
> So we just source gate_enc.sh and that allows us to run Gate.
>
> That is how we run it on another machine without errors but also without
> visualization.
>
>  But maybe source-gatev8.1 does more than gate_env.sh and that may fix the
> above problem ?
>
> Where is it? I could not find it.
>
>
>
> Daniel is an excellent programmer who will be learning GATE and I advised
> him to request a collaborative account.
>
>
>
> Thanks again,
>
> Assen
>
>
>
>
>
> *From:* Alexandre CARRÉ [mailto:xela.errac at gmail.com]
> *Sent:* Thursday, January 24, 2019 4:26 PM
> *To:* Kirov, Assen/Medical Physics <kirova at MSKCC.ORG>
> *Cc:* gate-users <gate-users at lists.opengatecollaboration.org>;
> Lafontaine, Daniel/Medical Physics <lafontad at mskcc.org>
> *Subject:* [EXTERNAL] Re: Re: [Gate-users] Easy Gate Installation
>
>
>
> Hello assen,
>
>
>
> 1) For the error, I can't tell you where it came from without seeing the
> script that was run.
>
>
>
> 2) source-gatev8.1 is an alias for sourcing environment variables. So you
> need to execute 'source-gatev8.1' and then 'Gate'.
>
>
>
> Alexandre CARRE
>
>
>
>
>
> Le jeu. 24 janv. 2019 à 21:07, <kirova at mskcc.org> a écrit :
>
> Hi  Alexandre and all,
>
>
>
> We just used the script and it is really of great help – thank you very
> much!
>
> I had not installed it for a very long time.
>
>
>
> Just a couple of comments:
>
> 1)When trying it we get this error:
>
>
>
> PreInit> /gate/run/initialize
>
> [Core-0] Initialization of geometry
>
> [Core-0] Initialization of physics
>
> [Physic-0] WARNING: manual physic lists are being deprecated.
>
> Please, use physic list builder mechanism instead. Related documentation
> can be found at:
>
>
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics
>
> [Core-0] Initialization of actors
>
> GateImageT.icc (l.75): Unknown image file extension. Supported extensions
> are :
>
> .vox, .hdr, .img, .mhd, .mha, .h33, .i33, .dcm
>
>
>
> Do you have any clues what may be wrong?
>
>
>
> 2)On the github explanation before running Gate,
>
> I guess you mean to source gate_env.sh
>
> you have something else there.
>
>
>
> I am copying to this message our new colleague Daniel Lafontaine,
>
> who will join the collaboration soon.
>
>
>
> Thanks again,
>
> Assen
>
>
>
> --
>
> Assen S. Kirov, Ph.D., DABR
>
> Associate Attending Physicist
>
> Department of Medical Physics
>
> room S-1119G
>
> tel: (212) 639-7126
>
>
>
>
>
>
>
>
>
> *From:* Gate-users [mailto:
> gate-users-bounces at lists.opengatecollaboration.org] *On Behalf Of *Alexandre
> CARRÉ
> *Sent:* Monday, November 26, 2018 5:50 AM
> *To:* joao.marcos at coimbra.lip.pt; gate-users <
> gate-users at lists.opengatecollaboration.org>
> *Subject:* [EXTERNAL] Re: [Gate-users] Easy Gate Installation
>
>
>
> Great to hear that ! I'm glad that you like it.
>
>
>
> Best regards,
>
>
>
> Have a nice week.
>
>
>
> Le lun. 26 nov. 2018 à 11:17, João Marcos <joao.marcos at coimbra.lip.pt> a
> écrit :
>
> Alexandre,
>
>
> I will definitely use your script. Thank you very much for make it
> available for all.
> I have just installed the docker version of Gate.
>
> Have a nice week.
> Regards,
> João Marcos
>
>
> On Sun, 25 Nov 2018 11:20:33 +0100, Alexandre CARRÉ
> <xela.errac at gmail.com>
> wrote:
> > Hello GATE community,
> >
> > I have developed a small script that allows you to install GATE in a
> simple
> > way. In addition, new users often have difficulty installing GATE, which
> > can help them.
> > I hope this tool will be useful.
> >
> > It is available at the following address:
> > https://github.com/Alxaline/Easy-GATE-Installation
> >
> > Best regards,
>
> ᐧ
>
>
>
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