[Gate-users] implementing MOBY into GATE

[Parisa Khateri]

Hi Iván,

I was wondering if you could solve this issue. If so, I would really appreciate if you could share your experience with me. I am totally new to Gate voxelized simulation and need some help to import MOBY/ROBY outputs into gate and run a voxelized simulation.

Thank you in advance and kind regards,

Parisa

________________________________
From: Gate-users [gate-users-bounces at lists.opengatecollaboration.org] on behalf of Límbano Iván López Coello [vancoello at gmail.com]
Sent: 24 October 2017 04:24
To: gate-users at lists.opengatecollaboration.org
Subject: [Gate-users] implementing MOBY into GATE

Hello  all
 My name is Iván, I am quite new in this area my final proyect consist in a few experiments using different sizes of MOBY and 67Ga, but I am stuck in how import succesfully the MOBY into GATE

I have a few questions I hope you can help me:


1.- I have checked the forums for this question, but it is still not clear for me, I have created a phantom with the MOBY software, it gave me two files:

Act.bin and Atn.bin, I see that I need to convert them to a 16 bit inter file, but I am using ImageJ to perform the conversion, my steps were:

Import the file then  edit>options>conversions: uncheck scale when converting then I changed the image type to 16 bit and finally save it as a RAW.

I would like to know if that is ok or Do I need to use another software?


2.- I have checked that after the conversion to 16 bit I need to convert again to a i33 with a header h33 with a xmedcon software, I am using Ubuntu 16.04 and I am getting issues during installations of this xmedcon about JAVA JDK 8, so I am not able to perform this conversion yet , I was checking that there is a windows version that I will try to install but in the mean time I would like to know if there is another way to perform the conversion and get my images with a header?


3.- I was trying to do the example that is in GATE webpage that is named pre-clinical dosimetry that has a voxelized mouse phantom, I ran it and looks that it worked but when I enabled the visual mac I can not see the phantom, for now I just want to see a voxelized phantom by just running  the visual mac.. I checked the data folder and I see that the header is in a .iff file and the images are in a .img file. How can I run just the visual mac and see the mouse phantom?


Thank you
Best Regards from México
Iván
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