[Gate-users] GATE Docker container now available

[Miller, Michael]

Dear gate-users,

I’ve been running Gate in the docker container and now want to use HT condor to schedule jobs.  When I run the gate container in scripts or manually, I mount a local drive for the gate output:

                docker run -it --mount type=bind,source=/scratch-for-this-job,target=/scratch \
opengatecollaboration/gate /scratch/this-job.sh

I start gate with the script /scratch-for-this-job/this-job.sh:
                #!/usr/bin/bash --login
                cd `dirname $0`
Gate this_macro.mac

The “--login" is needed to ensure that the shell in the container finds Gate.  I’ve tried moving this to HT condor with this submit file:
universe       = docker
docker_image   = opengatecollaboration/gate
executable     = /scratch-for-this-job‑/this-job.sh
output         = docker-gate.out.$(ClusterID)-$(ProcID)
error          = docker-gate.err.$(ClusterID)-$(ProcID)
log            = docker-gate.log.$(ClusterID)-$(ProcID)
queue

This fails with a  “Gate: command not found” error.  I think this is because the script is not starting as a login shell, even with the “--login" option.

Can anyone provide an example of how they’ve used the docker universe with the  opengatecollaboration/gate?  Or have people been using the vanilla universe and managing directories separately from condor?

Thanks, Mike

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