[Gate-users] Hyper-threading performance boost for GATE computation

[Simon Stute]

Hi Ian,

The hyper-threading is something virtual, where the idea is to increase 
the number of operations supplied to the actual processor in order to 
fill in each CPU clock as much as possible. Because without 
hyper-threading, the time required to process instructions (the bus, 
memory access, etc) may lead to some unused CPU clocks.

 From my experience with hyper-threading and using twice the number of 
splits for a GATE simulation as you described, the gain is about 1.2-1.3 
and not 2. I tested it on the same procs in the same hardware by 
activating the hyper-threading or not.

Also the two procs you are comparing do not have the same lithography 
nor the cache size, and both are important.

Cheers
Simon

Le 05/10/2017 à 16:30, Porter Ian (RBV) NHS Christie Tr a écrit :
> Hello All,
>    My apologies if this has been covered before.  I am working on the specification of a compute cluster to replace our current one which is based around Core i5-2500 CPUs.  I have been unable to find any benchmark results for GATE/GEANT where different CPUs are compared, so I have used benchmarks from spec.org - specifically SPECfp_rate2006 - to try to gauge which CPUs would be best considering our budget.  Going on these results, a CPU such as a Xeon E3-1240 v6 appears to give twice the performance as the Core i5 2500 for the same number of cores and at a similar clock frequency.  The difference is that the Xeon has hyper-threading capability, and can run twice the number of threads per core.
>    We are currently using the job splitter to split each simulation into a number of jobs that matches the total number of cores on our worker nodes.  I assume that with hyper-threading we would split simulations into twice the number of jobs and send two jobs per core to each node.  My question is whether I can expect roughly double the performance from GATE if I use hyper-threading, or whether the performance gain is likely to be much less in the real world?  If I want twice the performance, would it be better to aim for double the number of cores instead?
>
> Many Thanks,
>    -- Ian.
> --------------------------------------------
> Ian Porter, Dept. Medical Physics,
> Christie Hospital NHS Foundation Trust,
> Wilmslow Road, Manchester, M20 4BX.  England.
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