[Gate-users] gate on cluster: speedup
G Tom
gregthom992 at gmail.com
Thu May 11 06:07:19 CEST 2017
Hi all,
I just had a question about running gate on a cluster.
I used gjs to split my simulation into 40 macros. I was simulating 1e8
particles for a radiotherapy application.
Now I thought the 40 jobs will each run 1e8/40 particles but I am seeing
instead that each is running 1e8 macros ?
I took a look at the simulations
statistics output and indeed each job runs 1e8 particles:
==============
# NumberOfRun = 1
# NumberOfEvents = 100000000
# NumberOfTracks = 1754799115
# NumberOfSteps = 5139294665
# NumberOfGeometricalSteps = 330040574
# NumberOfPhysicalSteps = 4809254091
# ElapsedTime = 69568.3
# ElapsedTimeWoInit = 69559.5
# StartDate = Wed May 10 00:20:45 2017
# EndDate = Wed May 10 19:40:14 2017
# StartSimulationTime = 0
# StopSimulationTime = 1
# CurrentSimulationTime = 1.2
# VirtualStartSimulationTime = 0.2
# VirtualStopSimulationTime = 0.225
# ElapsedSimulationTime = 1
# PPS (Primary per sec) = 1437.62
# TPS (Track per sec) = 25227.3
# SPS (Step per sec) = 73883.4
examples of split macro files are :
..
/gate/application/setTotalNumberOfPrimaries 1e8
/gate/random/setEngineSeed 1683838443918737612
/gate/application/setTimeStart 0. s
/gate/application/addSlice 1. s
/gate/application/startDAQCluster 0.975 1 0 s
.....
/gate/application/setTotalNumberOfPrimaries 1e8
/gate/random/setEngineSeed 313149272728410404
/gate/application/setTimeStart 0. s
/gate/application/addSlice 1. s
/gate/application/startDAQCluster 0.95 0.975 0 s
I am not sure I fully understand how to obtain speedup by actually
splitting the
number of simulated particles using gjs,
Thanks
GT
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