[Gate-users] Gate-users Digest, Vol 130, Issue 11 [SEC=UNCLASSIFIED]
Salehzahi, Farshid (Health)
Farshid.Salehzahi at act.gov.au
Wed Mar 15 03:01:57 CET 2017
Hello David
Thanks for your help and advice. It took us a while to realise the MT issue.
Nonetheless rebuilding Gate without MT worked a treat; so that is great!
With regards to the "hack", this was performed after the same errors
that had arisen throughout were persistent.
A new simple query, Gate cannot seem to "see" where the macros folder
is. I have read that the folders: mac, data and output need to be placed
inside the executable directory. I have tried this with no luck.
Output I get is: ERROR: Can not open a macro file <NM_materials.mac>. Set macro path with "/control/macroPath" if needed.
I had created the file NM_materials.mac and placed it in a folder named "mac" inside the gate_v7.2-install/bin.
The "Getting Started" guide assumes the system can see these. My environment
variables are set to see the gate_v7.2-install/bin folder.
Looking forward to your advice.
Cheers
Farshid
Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM)
Head of Molecular and Nuclear Medicine Physics Section
Medical Physics and Radiation Engineering
ANU Visiting Fellow
Research School of Physics and Engineering,
ANU College of Physical and Mathematical Sciences
TCH Phone: 6244 4091 | Fax: 6244 2977 |mailto:Farshid.Salehzahi at act.gov.au
Clinical Support Services
Canberra Hospital and Health Services
We acknowledge the traditional custodians of the ACT, the Ngunnawal people. We acknowledge and respect their continuing culture and the contribution they make to the life of this city and this region.
-----Original Message-----
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Sent: Monday, 13 March 2017 9:57 PM
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Subject: Gate-users Digest, Vol 130, Issue 11
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Today's Topics:
1. Re: problem with .IAEAphsp format (David Sarrut)
2. Re: Gate-users Digest, Vol 130, Issue 5 [SEC=UNCLASSIFIED]
(David Boersma)
----------------------------------------------------------------------
Message: 1
Date: Mon, 13 Mar 2017 10:44:52 +0100
From: David Sarrut <David.Sarrut at creatis.insa-lyon.fr<mailto:David.Sarrut at creatis.insa-lyon.fr>>
To: Consuelo Guardiola <guardiola at imnc.in2p3.fr<mailto:guardiola at imnc.in2p3.fr>>, gate-users
<gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>>
Subject: Re: [Gate-users] problem with .IAEAphsp format
Message-ID:
<CAKTJC4B1HvTA_71vrVo5C38NPN0QBkU5jq19tUyj2CB4wmD3MQ at mail.gmail.com<mailto:CAKTJC4B1HvTA_71vrVo5C38NPN0QBkU5jq19tUyj2CB4wmD3MQ at mail.gmail.com>>
Content-Type: text/plain; charset="utf-8"
Hello,
- for IAEA phase-space -> sorry, I dont know
- for root phase-space, please explain precisely what the issue is. When
compiling ? When writing or when reading a phsp ? What is you goal ?
Short information:
To write a phsp, it is managed by the PhaseSpaceActor
<https://github.com/OpenGATE/Gate/blob/develop/source/digits_hits/src/GatePhaseSpaceActor.cc>.
There are a lot of options (see the macros in the messenger
<https://github.com/OpenGATE/Gate/blob/develop/source/digits_hits/src/GatePhaseSpaceActorMessenger.cc>).
Do you setEnablePartName to true to store the particle name in the phsp ?
To read a phsp as a source of particles, it is managed by the
SourcePhaseSpace
<https://github.com/OpenGATE/Gate/blob/develop/source/physics/src/GateSourcePhaseSpace.cc>.
Also, have a look at the code and the associated messengers to get the full
list of options.
Phase Space is a large piece of code and could be quite powerful, but it is
complex. Please note that some bug fixes and modifications have been done
since the last Gate version. You may have a better luck to give a try with
the current Gate version (develop branch, which will be the next Gate 8.0
soon).
David
PS: please keep gate-user mailing list in copy, it could help other people
... and other people could help ;)
On Mon, Mar 13, 2017 at 10:28 AM, Consuelo Guardiola <
guardiola at imnc.in2p3.fr<mailto:guardiola at imnc.in2p3.fr>> wrote:
> Hi David (I'm adding Yolanda Prezado in CC, my advisor here, since she
> told me she has recently discussed some v7.0 vs 7.1 discrepancies with you)
> :
>
> I lately tried with IAEA phsp format since in the Gate forum someone
> replied me this:
>
> ------------------------------------------------------------
> --------------------------------------
>
> Hi,
>
> I had the same problem few months ago and i think it was related to the
> root version. Version 5.34/36 didn't work but 5.34/26 worked. Otherwise,
> i'm finally using .IAEAphsp format to gather PhaseSpace files and its also
> working.
>
> Hope this would help,
>
> Tony
>
> when I asked this:
>
> Dear Gate users,
>
> I gathered a Phase Space file (in .root format) to be used as a source
> afterwards. When I try to run it as it is explained in the manual:
>
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.2:
> Phase_space_concept
>
> it fails and says that I need to define the particle type. Nevertheless,
> the .root file contains all the information (particle types, etc). I have
> not found more info neither in forums or around. Please could someone tell
> me if I am losing some info or what I may do to figure it out?
>
> Thanks in advance,
> Consuelo.
> ------------------------------------------------------------
> -----------------------------------------------------------
>
>
> I have tried both things: first reinstalling everything with 5.34/26 root
> version, but did not work, later with IAEA phsp format... the point is that
> neither with Gate 7.0 nor 7.1 I can launch the phase space file WITHOUT
> specify the particle type (which would be completely wrong...). Do you have
> any idea how to figure this out? I would appreciate whatever advice.
>
> Thanks in advance
> Consuelo
>
>
>
> ------------------------------
> *De: *"David Sarrut" <David.Sarrut at creatis.insa-lyon.fr<mailto:David.Sarrut at creatis.insa-lyon.fr>>
> *À: *"Consuelo Guardiola" <guardiola at imnc.in2p3.fr<mailto:guardiola at imnc.in2p3.fr>>
> *Envoyé: *Lundi 13 Mars 2017 10:18:36
> *Objet: *Re: [Gate-users] problem with .IAEAphsp format
>
> Hello,
> to my knowledge, the IAEA phsp form in Gate in buggy: it only works for
> some type of particles.
>
> You may look at the source code:
> - https://github.com/OpenGATE/Gate/blob/develop/source/
> general/src/GateIAEAHeader.cc
> - https://github.com/OpenGATE/Gate/blob/develop/source/
> general/src/GateIAEAPhsp.cc
> - https://github.com/OpenGATE/Gate/blob/develop/source/
> general/src/GateIAEARecord.cc
> - https://github.com/OpenGATE/Gate/blob/develop/source/
> general/src/GateIAEAUtilities.cc
>
> it could help to find what's wrong ...
>
> David
> PS: sorry I cannot help, I do not use such format
>
> On Wed, Mar 8, 2017 at 3:34 PM, Consuelo Guardiola <
> guardiola at imnc.in2p3.fr<mailto:guardiola at imnc.in2p3.fr>> wrote:
>
>> Dear Gate users,
>>
>> If I try to gather the phase space in .IAEAphsp format in both Gate v7.0
>> and v7.1, it does not work. Apparently, it does not get any error-file
>> back, but in the running-file I find this:
>>
>> GatePhaseSpaceActor.cc (l.296): Actor phase space: particle not available
>> in IAEA format.
>>
>> (no matter the version of Gate that I use or even running different jobs
>> to discard a possible particle/material issue)
>>
>> But, unexpectedly, I get an empty (0 size) output.IAEAphsp file.
>>
>> Does anyone know what happens?
>>
>> Thanks in advance,
>> Consuelo.
>>
>>
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>
>
>
> --
> David Sarrut, Phd
> Directeur de recherche CNRS
> CREATIS, UMR CNRS 5220, Inserm U1206
> Centre de lutte contre le cancer Léon Bérard
> 28 rue Laënnec, 69373 Lyon cedex 08
> Tel : 04 78 78 51 51 / 06 74 72 05 42
> http://www.creatis.insa-lyon.fr/~dsarrut
> _________________________________
> "2 + 2 = 5, for extremely large values of 2"
> _________________________________
>
>
--
David Sarrut, Phd
Directeur de recherche CNRS
CREATIS, UMR CNRS 5220, Inserm U1206
Centre de lutte contre le cancer Léon Bérard
28 rue Laënnec, 69373 Lyon cedex 08
Tel : 04 78 78 51 51 / 06 74 72 05 42
http://www.creatis.insa-lyon.fr/~dsarrut
_________________________________
"2 + 2 = 5, for extremely large values of 2"
_________________________________
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Message: 2
Date: Mon, 13 Mar 2017 11:57:22 +0100
From: David Boersma <david.boersma at physics.uu.se<mailto:david.boersma at physics.uu.se>>
To: <gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>>
Subject: Re: [Gate-users] Gate-users Digest, Vol 130, Issue 5
[SEC=UNCLASSIFIED]
Message-ID: <1d030eac-1fda-7da2-ba94-eaaaaaaad161 at physics.uu.se<mailto:1d030eac-1fda-7da2-ba94-eaaaaaaad161 at physics.uu.se>>
Content-Type: text/plain; charset="utf-8"; format=flowed
Hi Farshid,
Thanks for sending me the cmake log file. I noticed (at least) two
important things.
(1) Do not use multithreading with GATE (unless you are a MT expert)
It looks like you are using a multi-threaded (MT) geant4 install. We
would absolutely love to run GATE in MT mode, but this requires lots of
very careful adjustments to make our code "thread-safe" and that will
still take a long while. The "allow MT mode" option is really only for
developers, the ONLY valid reason to switch it on would be to do
development work to make GATE thread safe.
(So we should not have provided this option in a release. Oops. Our bad.
:-) )
If you are stubborn then you'll find that GATE just compiles and runs
with MT geant4. But the results are unreliable. In particular random
number generation is tricky with multiple threads, and the GATE code is
NOT handling this correctly yet, so your results will not make any
statistical sense.
Unfortunately, this may mean that you need to recompile geant4, this
time with GEANT4_BUILD_MULTITHREADED:BOOL=OFF in the cmake step.
(2) you seem to have hacked your source directory
On lines 1827-1829 I see this happening:
/home/cneeley/apps/GATE/gate_v7.2/CMakeLists.txt(40):
FIND_PACKAGE(Geant4 REQUIRED ui_all vis_all )
Called from: [1] /home/cneeley/apps/GATE/gate_v7.2/CMakeLists.txt
/home/cneeley/apps/GATE/gate_v7.2/cmake-modules/FindGeant4.cmake(10):
find_program(GEANT4_CONFIG NAMES geant4-config PATHS
$ENV{GEANT4_INSTALL}/bin ${GEANT4_INSTALL}/bin /usr/local/bin
/opt/local/bin )
In other words, cmake gets its geant4-finding recipe from a file called
cmake-modules/FindGeant4.cmake in your gate_v7.2 source directory.
However, this cmake file is not at all part of the gate_v7.2 source
distribution. I just downloaded a fresh copy of the gate_v7.2.tar.gz tar
ball from the opengatecollaboration web site, to check if maybe my own
copy was corrupted, but it really does not contain a "FindGeant4.cmake"
file. I ran the same command as you did on my own system, and my own
cmake.log.gz file does not contain any mention of FindGeant4.cmake.
So it looks like you or your colleague manually copied that cmake file
into your source directory. That should not be necessary and it looks
like it may even be harmful (it might be the reason of all these troubles).
So... let's do the same exercise as before again, but with a pristine
source directory!
- disable bashrc & friends
- do a fresh login
- source /path/to/Geant4-install/bin/geant4.sh
- source /path/to/ROOT-install/bin/thisroot.sh
- cd /path/to/GATE/stuff
- mv gate_v7.2 gate_v7.2_HACKED
- md5sum gate_v7.2.tar.gz
- # should be: ae399c0af959846c018069d554fd05a9
- tar zxf gate_v7.2.tar.gz
- mkdir gate_v7.2-newbuild
- cd gate_v7.2-newbuild
- cmake --debug-output --trace ../gate_v7.2 2>&1 | gzip > cmake2.log.gz
etc
Of course you can also first try the normal way, with:
ccmake ../gate_v7.2
And if that does succeed normally (finally!), then you don't need to
bother with the debugging trace output, obviously (but if you do want to
make a cmake debug trace, make sure start with a fresh empty build
directory). You may run into other problems, of course, and then you are
welcome to open a new "ticket" here in on the mailing list. (And please
use a more informative subject line than "Gate-users Digest" :-) ).
Good luck,
David Boersma
Den 08/03/2017 kl. 11:59, skrev David Boersma:
> Hi Farshid,
>
> Congratulations, you have the most stubborn system I have ever had the
> honor of helping out with. Obviously we are still testing the wrong
> hypothesis. But I am not giving up! There are still a few brute force
> tricks to try. :)
>
> Could you do the same exercise (disable you .bashrc & friends, do a
> fresh login, make a new empty build directory, cd into it) but now run
> cmake with noisy debugging flags. Specifically:
>
> cmake --debug-output --trace ../gate_v7.2 2>&1 | gzip > cmake.log.gz
>
> This will not give any visible output, but it should at least produce a
> cmake.log.gz file. On my system that file is about 10 kilobytes. Could
> you send that file to me?
>
> (If the syntax is not familiar: the trace output gets dumped to stderr,
> the "2>&1" merges the stderr (file descriptor 2) into stdout (file
> descriptor 1), then you pipe the output through gzip in order to get a
> smaller log file which can be sent over email.)
>
> Cheers,
> David
>
> Den 08/03/2017 kl. 05:43, skrev Salehzahi, Farshid (Health):
>> Hello David
>>
>> Thanks for your time and advice again.
>>
>> Here is what happened:
>>
>>
>>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-install/lib/Geant4-10.2.3$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-install/lib/Geant4-10.2.3$>
>>
>> ls *.cmake
>>
>>
>>
>> Geant4Config.cmake Geant4LibraryDepends-relwithdebinfo.cmake
>>
>> Geant4ConfigVersion.cmake UseGeant4.cmake
>>
>> Geant4LibraryDepends.cmake
>>
>>
>>
>> So I do have the five CMake files, which is good.
>>
>>
>>
>> Next, entering:
>>
>>
>>
>> printenv | grep -i geant4
>>
>> which geant4-config
>>
>> which root-config
>>
>>
>>
>> resulted in confirmation that a clean bash session was implemented.
>>
>>
>>
>> As you can see, the same error occurs:
>>
>>
>>
>> CMake Error at CMakeLists.txt:67 (STRING):
>>
>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>> total to
>>
>> command.
>>
>>
>>
>>
>>
>>
>>
>> CMake Error at CMakeLists.txt:68 (STRING):
>>
>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>> total to
>>
>> command.
>>
>>
>>
>>
>>
>>
>>
>> CMake Error at CMakeLists.txt:69 (STRING):
>>
>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>> total to
>>
>> command.
>>
>>
>>
>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.
>> Please
>>
>> use Geant4 10.1 or 10.2 distribution instead.
>>
>>
>>
>> CMake Error at CMakeLists.txt:173 (INCLUDE):
>>
>> include called with wrong number of arguments. include() only
>> takes one
>>
>> file.
>>
>>
>>
>> CMake Error at CMakeLists.txt:175 (INCLUDE):
>>
>> include could not find load file:
>>
>>
>>
>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include
>>
>>
>>
>>
>>
>>
>>
>> Your current Geant4 version is ... System cannot identify which Geant
>> version is being used.
>>
>>
>>
>> It seems like manually adding the Geant4_DIR might be an approach?
>>
>> Thanks for helping us.
>>
>> Cheers
>>
>> Farshid
>>
>>
>>
>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM)
>>
>> Head of Molecular and Nuclear Medicine Physics Section
>>
>> Medical Physics and Radiation Engineering
>>
>> ANU Visiting Fellow
>>
>> Research School of Physics and Engineering,
>>
>> ANU College of Physical and Mathematical Sciences
>>
>>
>>
>> TCH Phone: 6244 4091 | Fax: 6244 2977
>> |mailto:Farshid.Salehzahi at act.gov.au
>>
>> Clinical Support Services
>>
>> Canberra Hospital and Health Services
>>
>>
>>
>> We acknowledge the traditional custodians of the ACT, the Ngunnawal
>> people. We acknowledge and respect their continuing culture and the
>> contribution they make to the life of this city and this region.
>>
>>
>>
>>
>>
>> -----Original Message-----
>> From: Gate-users
>> [mailto:gate-users-bounces at lists.opengatecollaboration.org] On Behalf Of
>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
>> Sent: Tuesday, 7 March 2017 9:15 PM
>> To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
>> Subject: Gate-users Digest, Vol 130, Issue 5
>>
>>
>>
>> Send Gate-users mailing list submissions to
>>
>> gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>>
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>> or, via email, send a message with subject or body 'help' to
>>
>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>
>>
>> You can reach the person managing the list at
>>
>> gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>
>>
>> When replying, please edit your Subject line so it is more specific than
>> "Re: Contents of Gate-users digest..."
>>
>>
>>
>>
>>
>> Today's Topics:
>>
>>
>>
>> 1. Re: Gate-users Digest, Vol 129, Issue 41 [SEC=UNCLASSIFIED]
>>
>> (David Boersma)
>>
>>
>>
>>
>>
>> ----------------------------------------------------------------------
>>
>>
>>
>> Message: 1
>>
>> Date: Tue, 7 Mar 2017 11:14:49 +0100
>>
>> From: David Boersma <david.boersma at physics.uu.se
>> <mailto:david.boersma at physics.uu.se>>
>>
>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>> <mailto:Farshid.Salehzahi at act.gov.au>>, GATE
>>
>> users <gate-users at lists.opengatecollaboration.org
>> <mailto:gate-users at lists.opengatecollaboration.org>>
>>
>> Subject: Re: [Gate-users] Gate-users Digest, Vol 129, Issue 41
>>
>> [SEC=UNCLASSIFIED]
>>
>> Message-ID: <03e75a01-b435-687c-67be-f2bbcc00c10a at physics.uu.se
>> <mailto:03e75a01-b435-687c-67be-f2bbcc00c10a at physics.uu.se>>
>>
>> Content-Type: text/plain; charset="utf-8"; format=flowed
>>
>>
>>
>> Hi Farshid,
>>
>>
>>
>> I'm sorry, I meant to keep this on the list, in my hurry I mailed to you
>> personally last week.
>>
>>
>>
>> (Other mailing list readers: I asked Farshid to grep for Geant4_DIR in
>> the GATE build directory, previously he misunderstood my question and
>> did the grep in the geant4 build directory. From his answer we can see
>> that the grep in the GATE build directory gives an empty result.)
>>
>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> grep
>> Geant4_DIR
>>
>>> CMakeCache.txt
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> type
>> geant4-config
>>
>>>
>>
>>> geant4-config is
>>
>>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config
>>
>>>
>>
>>
>>
>>
>>
>> You show that a grep for Geant4_DIR in CMakeCache.txt in your build
>>
>> directory comes up empty. That is odd, because geant4-config *is* found
>>
>> and the --prefix output points to your geant4 installation. Still, it is
>>
>> somehow expected, because from the REGEX errors that you reported
>>
>> earlier it is clear that cmake somehow cannot find your geant4.
>>
>>
>>
>> So... could you verify that you do indeed have the necessary cmake files:
>>
>>
>>
>> ls
>>
>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/lib/Geant4-10.2.3/*.cmake
>>
>>
>>
>>
>> If this does not give you some (for me it's five) cmake files, then your
>>
>> installation is broken.
>>
>>
>>
>> If you do have those files, then it's time to cast suspicions on your
>>
>> .bashrc file. :)
>>
>>
>>
>> Could you please temporary rename your .bashrc, e.g.:
>>
>>
>>
>> cd
>>
>> mv .bashrc bashrc_saved
>>
>>
>>
>> If you have a .profile, .bash_login and/or a .bash_profile in your home
>>
>> directory, please rename those too. Keep the terminal in which you do
>>
>> this open, so that you can undo these changes later, after we're done
>>
>> with this debugging experiment.
>>
>>
>>
>> (Aside: in general, messing with your .bashrc/login/profile files can be
>>
>> risky, because if you do it wrong then you can lock yourself out of your
>>
>> account and then you have to send a very painful and sad email to your
>>
>> sysadmin. Keeping the shell session open running allows you to fix
>>
>> things if in your test logins in a fresh new terminal window you find
>>
>> out that you screwed up.)
>>
>>
>>
>> And now start a fresh login (from your mac into the linux machine).
>>
>> Make sure that you indeed have a pristine bash session, no geant4 or
>>
>> ROOT in your paths (unless ROOT was installed with /usr or /usr/local
>>
>> installation prefix, but I think that is not the case on your system),
>>
>> by checking that you get no output at all from these commands:
>>
>>
>>
>> printenv | grep -i geant4
>>
>> which geant4-config
>>
>> which root-config
>>
>>
>>
>> Now manually run the commands to add geant4 and ROOT to your environment:
>>
>>
>>
>> source /path/to/geant4/bin/geant4.sh
>>
>> source /path/to/root5/bin/thisroot.sh
>>
>>
>>
>> (Replace "/path/to/X" with the appropriate path... If ROOT is already in
>>
>> your PATH, with /usr or /usr/local, then you can omit that second source
>>
>> command.)
>>
>>
>>
>> Now make a new empty gate build directory, cd into it, and and run:
>>
>>
>>
>> ccmake ../gate_v7.2
>>
>>
>>
>> (If you named your gate source directory differently, then change the
>>
>> argument to this command accordingly.)
>>
>>
>>
>> Could you let us know if this works any better?
>>
>>
>>
>> Good luck,
>>
>> David Boersma
>>
>>
>>
>>
>>
>> Den 02/03/2017 kl. 04:11, skrev Salehzahi, Farshid (Health):
>>
>>> Hello David
>>
>>>
>>
>>>
>>
>>>
>>
>>> Thanks for highlighting that.
>>
>>>
>>
>>> Please find below the information requested:
>>
>>>
>>
>>>
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> echo $SHELL
>>
>>>
>>
>>> /bin/bash
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> type cmake
>>
>>>
>>
>>> cmake is /usr/bin/cmake
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> cmake
>> --version
>>
>>>
>>
>>> cmake version 3.5.1
>>
>>>
>>
>>> CMake suite maintained and supported by Kitware (kitware.com/cmake).
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> grep
>> Geant4_DIR
>>
>>> CMakeCache.txt
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> type
>> geant4-config
>>
>>>
>>
>>> geant4-config is
>>
>>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> geant4-config --version
>>
>>>
>>
>>> 10.2.3
>>
>>>
>>
>>>
>>
>>>
>>
>>> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$>
>> geant4-config --prefix
>>
>>>
>>
>>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/..
>>
>>>
>>
>>>
>>
>>>
>>
>>>
>>
>>>
>>
>>> By the way I thought it was worth mentioning that the LINUX environment
>>
>>> (local server) where the Geant4 and GATE libraries are built is being
>>
>>> accessed remotely via a Mac.
>>
>>>
>>
>>>
>>
>>>
>>
>>> Please let me know if you see any issues.
>>
>>>
>>
>>> Cheers
>>
>>>
>>
>>> Farshid
>>
>>>
>>
>>>
>>
>>>
>>
>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM)
>>
>>>
>>
>>> Head of Molecular and Nuclear Medicine Physics Section
>>
>>>
>>
>>> Medical Physics and Radiation Engineering
>>
>>>
>>
>>> ANU Visiting Fellow
>>
>>>
>>
>>> Research School of Physics and Engineering,
>>
>>>
>>
>>> ANU College of Physical and Mathematical Sciences
>>
>>>
>>
>>>
>>
>>>
>>
>>> TCH Phone: 6244 4091 | Fax: 6244 2977
>>> |mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>> Clinical Support Services
>>
>>>
>>
>>> Canberra Hospital and Health Services
>>
>>>
>>
>>>
>>
>>>
>>
>>> -----Original Message-----
>>
>>> From: David Boersma [mailto:david.boersma at physics.uu.se]
>>
>>> Sent: Thursday, 2 March 2017 6:02 AM
>>
>>> To: Salehzahi, Farshid (Health)
>>
>>> Subject: Re: [Gate-users] Gate-users Digest, Vol 129, Issue 41
>>
>>> [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>
>>
>>>
>>
>>> Hi Farshid,
>>
>>>
>>
>>>
>>
>>>
>>
>>> Question 3 was about the build directory of GATE, not geant4.
>>
>>>
>>
>>> Could you do those checks on the CMakeCache.txt of the gate build
>> directory?
>>
>>>
>>
>>>
>>
>>>
>>
>>> David
>>
>>>
>>
>>>
>>
>>>
>>
>>> On 02/27/2017 06:19 AM, Salehzahi, Farshid (Health) wrote:
>>
>>>
>>
>>>> Dear David et. al
>>
>>>
>>
>>>> Thanks very much for the time and effort you put in to this issue for
>>
>>>
>>
>>>> us. We do really appreciate that.
>>
>>>
>>
>>>> The following highlighted section addresses all your comments. Please
>>
>>>
>>
>>>> let me know if you need anything else to verify the issue for us.
>>
>>>
>>
>>>> Still having the same issues. What should Geant4_DIR be set to? I can
>>
>>>
>>
>>>> add a CMake parameter manually perhaps?
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Had tried to build Gate_v7.2 with Geant4.10.2 earlier and had the same
>>
>>>
>>
>>>> errors. For my Geant4 only projects I will be using the latest build
>>
>>>
>>
>>>> (10.3). I had mistakenly pasted the output from an attempt to build
>>
>>>
>>
>>>> Gate with the Geant4.10.3 version even though the problem was
>>
>>>
>>
>>>> identical with version 10.2.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> I have now built Root5.34/36.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> 1 ) Here is the result from the environment variable query.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/Desktop$ printenv | grep -i geant4
>>
>>>
>>
>>>> G4LEVELGAMMADATA=/home/cneeley/apps/Geant4/Old/Packages10.2/PhotonEvap
>>
>>>
>>
>>>> oration3.2
>>
>>>
>>
>>>> G4NEUTRONXSDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4NEUTRONXS
>>
>>>
>>
>>>> 1.4
>>
>>>
>>
>>>> G4LEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4EMLOW6.48
>>
>>>
>>
>>>> LD_LIBRARY_PATH=/home/cneeley/apps/Geant4/Old/geant4.10.2-install/lib
>>
>>>
>>
>>>> G4NEUTRONHPDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4NDL4.5
>>
>>>
>>
>>>> G4ENSDFSTATEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4ENSDFSTA
>>
>>>
>>
>>>> TE1.2.3
>>
>>>
>>
>>>> G4RADIOACTIVEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/Radioacti
>>
>>>
>>
>>>> veDecay4.3.2
>>
>>>
>>
>>>> G4ABLADATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4ABLA3.0
>>
>>>
>>
>>>> PATH=/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin:/home/cneel
>>
>>>
>>
>>>> ey/bin:/home/cneeley/.local/bin:/home/cneeley/apps/Qt5.8/5.8/gcc_64/bi
>>
>>>
>>
>>>> n:/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin:/usr/local/sbi
>>
>>>
>>
>>>> n:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/g
>>
>>>
>>
>>>> ames:/snap/bin
>>
>>>
>>
>>>> G4PIIDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4PII1.3
>>
>>>
>>
>>>> G4SAIDXSDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4SAIDDATA1.1
>>
>>>
>>
>>>> G4REALSURFACEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/RealSurfa
>>
>>>
>>
>>>> ce1.0
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> 2) I built Geant4 from the source
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> 3)
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>> echo
>>
>>>
>>
>>>> $SHELL /bin/bash
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> type cmake
>>
>>>
>>
>>>> cmake is /usr/bin/cmake
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> cmake
>>
>>>
>>
>>>> --version cmake version 3.5.1
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> CMake suite maintained and supported by Kitware (kitware.com/cmake).
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>> grep
>>
>>>
>>
>>>> Geant4_DIR CMakeCache.txt
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>> type
>>
>>>
>>
>>>> geant4-config geant4-config is
>>
>>>
>>
>>>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>>
>>
>>>> geant4-config --version
>>
>>>
>>
>>>> 10.2.3
>>
>>>
>>
>>>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>>
>>>
>>
>>>> geant4-config --prefix
>>
>>>
>>
>>>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/..
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> The only Geant4_DIR found in the CMakeCache.txt file was:
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Geant4_BINARY_DIR:STATIC=/home/cneeley/apps/Geant4/Old/geant4.10.2-bui
>>
>>>
>>
>>>> ld
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Geant4_SOURCE_DIR:STATIC=/home/cneeley/apps/Geant4/Old/geant4.10.02.p0
>>
>>>
>>
>>>> 3
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Yours Sincerely
>>
>>>
>>
>>>> Farshid
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>>
>>>
>>
>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>>
>>>
>>
>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>>
>>>
>>
>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> -----Original Message-----
>>
>>>
>>
>>>> From: Gate-users
>>
>>>
>>
>>>> [mailto:gate-users-bounces at lists.opengatecollaboration.org] On Behalf
>>
>>>
>>
>>>> Of gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> Sent: Saturday, 25 February 2017 3:20 AM
>>
>>>
>>
>>>> To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> Subject: Gate-users Digest, Vol 129, Issue 41
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Send Gate-users mailing list submissions to
>>
>>>
>>
>>>> gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> To subscribe or unsubscribe via the World Wide Web, visit
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>> or, via email, send a message with subject or body 'help' to
>>
>>>
>>
>>>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> You can reach the person managing the list at
>>
>>>
>>
>>>> gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> When replying, please edit your Subject line so it is more specific
>>
>>>
>>
>>>> than
>>
>>>
>>
>>>> "Re: Contents of Gate-users digest..."
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Today's Topics:
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> 1. Re: Σχετ: Gate-users Digest, Vol 129, Issue 39
>>
>>>
>>
>>>> [SEC=UNCLASSIFIED] (David Boersma)
>>
>>>
>>
>>>> 2. Re: Σχετ: Gate-users Digest, Vol 129, Issue 39
>>
>>>
>>
>>>> [SEC=UNCLASSIFIED] (David Boersma)
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> ----------------------------------------------------------------------
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Message: 1
>>
>>>
>>
>>>> Date: Fri, 24 Feb 2017 12:36:02 +0100
>>
>>>
>>
>>>> From: David Boersma <david.boersma at physics.uu.se
>>
>>>
>>
>>>> <mailto:david.boersma at physics.uu.se>>
>>
>>>
>>
>>>> To: <gate-users at lists.opengatecollaboration.org
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>>
>>
>>>
>>
>>>> Subject: Re: [Gate-users] Σχετ: Gate-users Digest, Vol 129, Issue
>>
>>>
>>
>>>> 39 [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>> Message-ID: <2616684a-47ec-ce92-4190-fd876a719491 at physics.uu.se
>>
>>>
>>
>>>> <mailto:2616684a-47ec-ce92-4190-fd876a719491 at physics.uu.se>>
>>
>>>
>>
>>>> Content-Type: text/plain; charset="utf-8"; format=flowed
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Hi Farshid,
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Konstantinos is partly right about the incompatible geant4 versions.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> ROOT 6.* will not compile with Gate 7.2 (for a silly simple reason
>>
>>>
>>
>>>> that is fixed on github, so in the upcoming release you'll be able to
>>
>>> use ROOT6).
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Geant4 10.03 has not been *validated* for gate 7.2 (because geant4
>>
>>>
>>
>>>> 10.03 was released long after gate 7.2 was released), but it should
>>
>>>
>>
>>>> not give you this build error. I just tried it on my own machine and I
>>
>>>
>>
>>>> can compile gate 7.2 just fine with geant4 10.03. So I strongly
>>
>>>
>>
>>>> suspect that after you'll install (the latest patch version of) geant4
>>
>>>
>>
>>>> 10.02 you will run into the same build error.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> (The rest of this mail I wrote already before Konstantinos wrote to
>>
>>>
>>
>>>> the
>>
>>>
>>
>>>> list...)
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> From those regex errors we can conclude that for some reason cmake
>>
>>>
>>
>>>> does not manage to define the Geant4_VERSION variable. That is
>>
>>>
>>
>>>> strange, because in the first line of the quoted output you show that
>>
>>>
>>
>>>> it does find the installation prefix and it even quotes the version in
>>
>>>
>>
>>>> parentheses. We need to collect more diagnostics, hopefully that will
>>
>>>
>>
>>>> give us a clue.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> (1) multiple installs?
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Do you have other geant4 installations on your system besides the one
>>
>>>
>>
>>>> you intend to use, and could you check the output of
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> printenv | grep -i geant4
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> to see if maybe your shell environment somehow has a mixture of
>>
>>>
>>
>>>> multiple versions?
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> (2) install method
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> How did you install geant4? Build from source or unpack a binary
>>>> tarball?
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> (3) check cmake and geant4-config
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Could you cd to the *build* directory where you most recently tried to
>>
>>>
>>
>>>> run cmake, and then copy-paste the following commands into you shell,
>>
>>>
>>
>>>> and then copy-paste the resulting output into a mail to the list?
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> echo $SHELL
>>
>>>
>>
>>>> type cmake
>>
>>>
>>
>>>> cmake --version
>>
>>>
>>
>>>> grep Geant4_DIR CMakeCache.txt
>>
>>>
>>
>>>> type geant4-config
>>
>>>
>>
>>>> geant4-config --version
>>
>>>
>>
>>>> geant4-config --prefix
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Maybe this helps to get a clue to what's going on on your system. If
>>
>>>
>>
>>>> it doesn't then I can try to come up with some more diagnostic tests...
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Good luck,
>>
>>>
>>
>>>> David
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Den 24/02/2017 kl. 11:40, skrev Konstantinos P. Chatzipapas, MSc:
>>
>>>
>>
>>>>> Hello,
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> I see that you have install Geant4 V10.3.0 and Root V6.08/02 that
>>
>>>
>>
>>>>> doesn't work for GATE V7.2.
>>
>>>
>>
>>>>> You must install Geant4 V10.02.p03 and Root V5.34/36, so that GATE
>>
>>>
>>
>>>>> V7.2 would work.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Kind Regards,
>>
>>>
>>
>>>>> Konstantinos
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> -----------------------------------------------------
>>
>>>
>>
>>>>> Konstantinos Chatzipapas
>>
>>>
>>
>>>>> Medical Physicist, MSc
>>
>>>
>>
>>>>> University of Patras
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> web page: Physics Magazine <http://www.physicsmag.com/>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Στις 7:19 π.μ. Παρασκευή, 24 Φεβρουαρίου 2017, ο/η "Salehzahi,
>>
>>>
>>
>>>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>>
>>> <mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>> <mailto:Farshid.Salehzahi at act.gov.au%20%3cmailto:Farshid.Salehzahi at act.gov.au>>>
>>
>>
>>> έγραψε:
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Hi Konstantinos
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Thanks for taking the time to support.
>>
>>>
>>
>>>>> I can confirm that source geant4.sh is in our bashrc.
>>
>>>
>>
>>>>> I can also confirm that we ran GEANT4 example, which was completed
>>
>>>
>>
>>>>> smoothly indicating the GEANT4 us running trouble-free. :)
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> I have copied the text below from the terminal, which shows the
>>
>>>
>>
>>>>> errors we are facing for your further analysis and possible advice
>>
>>> please.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Below is the output from CMake specifying the errors encountered.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/..
>>
>>>
>>
>>>>> (10.3.0) CMake Error at CMakeLists.txt:67 (STRING):
>>
>>>
>>
>>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>>
>>> total to
>>
>>>
>>
>>>>> command.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> CMake Error at CMakeLists.txt:68 (STRING):
>>
>>>
>>
>>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>>
>>> total to
>>
>>>
>>
>>>>> command.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> CMake Error at CMakeLists.txt:69 (STRING):
>>
>>>
>>
>>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>>
>>> total to
>>
>>>
>>
>>>>> command.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.
>>
>>>
>>
>>>>> Please use Geant4 10.1 or 10.2 distribution instead.
>>
>>>
>>
>>>>> Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08 CMake Error at
>>
>>>
>>
>>>>> CMakeLists.txt:173 (INCLUDE):
>>
>>>
>>
>>>>> include called with wrong number of arguments. include() only
>>
>>> takes one
>>
>>>
>>
>>>>> file.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> CMake Error at CMakeLists.txt:175 (INCLUDE):
>>
>>>
>>
>>>>> include could not find load file:
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Yours Sincerely
>>
>>>
>>
>>>>> Farshid
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>>
>>>
>>
>>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>>
>>>
>>
>>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>>
>>>
>>
>>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> TCH Phone: 6244 4091 | Fax: 6244 2977
>>
>>>
>>
>>>>> |mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>> |<mailto:Farshid.Salehzahi at act.gov.au>
>>
>>>
>>
>>>>> Clinical Support Services
>>
>>>
>>
>>>>> Canberra Hospital and Health Services
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> -----Original Message-----
>>
>>>
>>
>>>>> From: Gate-users
>>
>>>
>>
>>>>> [mailto:gate-users-bounces at lists.opengatecollaboration.org
>>
>>>
>>
>>>>> <mailto:gate-users-bounces at lists.opengatecollaboration.org>] On
>>
>>>
>>
>>>>> Behalf Of gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> Sent: Thursday, 23 February 2017 7:53 PM
>>
>>>
>>
>>>>> To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> Subject: Gate-users Digest, Vol 129, Issue 39
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Send Gate-users mailing list submissions to
>>
>>>
>>
>>>>> gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> To subscribe or unsubscribe via the World Wide Web, visit
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>> or, via email, send a message with subject or body 'help' to
>>
>>>
>>
>>>>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> You can reach the person managing the list at
>>
>>>
>>
>>>>> gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> When replying, please edit your Subject line so it is more specific
>>
>>>
>>
>>>>> than
>>
>>>
>>
>>>>> "Re: Contents of Gate-users digest..."
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Today's Topics:
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> 1. Σχετ: GATE Installation Problem [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>>> (Konstantinos P. Chatzipapas, MSc)
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> ---------------------------------------------------------------------
>>
>>>
>>
>>>>> -
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Message: 1
>>
>>>
>>
>>>>> Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)
>>
>>>
>>
>>>>> From: "Konstantinos P. Chatzipapas, MSc" <konhat88 at yahoo.gr
>>
>>>
>>
>>>>> <mailto:konhat88 at yahoo.gr>>
>>
>>>
>>
>>>>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>> <mailto:Farshid.Salehzahi at act.gov.au>>,
>>
>>>
>>
>>>>> "gate-users at lists.opengatecollaboration.org
>>
>>>
>>
>>>>> <mailto:gate-users at lists.opengatecollaboration.org>"
>>
>>>
>>
>>>>> <gate-users at lists.opengatecollaboration.org
>>
>>>
>>
>>>>> <mailto:gate-users at lists.opengatecollaboration.org>>
>>
>>>
>>
>>>>> Subject: [Gate-users] Σχετ: GATE Installation Problem
>>
>>>
>>
>>>>> [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>>> Message-ID: <1484310233.5675768.1487839960381 at mail.yahoo.com
>>
>>>
>>
>>>>> <mailto:1484310233.5675768.1487839960381 at mail.yahoo.com>>
>>
>>>
>>
>>>>> Content-Type: text/plain; charset="utf-8"
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Hello,
>>
>>>
>>
>>>>> Have source your geant4.sh in your bashrc??
>>
>>>
>>
>>>>> Best Regards,Konstantinos
>>
>>>
>>
>>>>> ----------------------------------------------------- Konstantinos
>>
>>>
>>
>>>>> Chatzipapas
>>
>>>
>>
>>>>> Medical Physicist, MSc
>>
>>>
>>
>>>>> University of Patras
>>
>>>
>>
>>>>> web page: Physics Magazine
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi,
>>
>>>
>>
>>>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>> <mailto:Farshid.Salehzahi at act.gov.au>> έγραψε:
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> <!--#yiv8120087482 _filtered #yiv8120087482 {font-family:"Cambria
>>
>>>
>>
>>>>> Math";panose-1:2 4 5 3 5 4 6 3 2 4;} _filtered #yiv8120087482
>>
>>>
>>
>>>>> {font-family:Calibri;panose-1:2 15 5 2 2 2 4 3 2 4;} _filtered
>>
>>>
>>
>>>>> #yiv8120087482 {font-family:Tahoma;panose-1:2 11 6 4 3 5 4 4 2 4;}
>>
>>>
>>
>>>>> _filtered #yiv8120087482 {font-family:Garamond;panose-1:2 2 4 4 3 3 1
>>
>>>
>>
>>>>> 1
>>
>>>
>>
>>>>> 8 3;}#yiv8120087482 #yiv8120087482 p.yiv8120087482MsoNormal,
>>
>>>
>>
>>>>> #yiv8120087482 li.yiv8120087482MsoNormal, #yiv8120087482
>>
>>>
>>
>>>>> div.yiv8120087482MsoNormal
>>
>>>
>>
>>>>> {margin:0cm;margin-bottom:.0001pt;font-size:11.0pt;font-family:"Calib
>>
>>>
>>
>>>>> r i", "sans-serif";}#yiv8120087482 a:link, #yiv8120087482
>>
>>>
>>
>>>>> span.yiv8120087482MsoHyperlink
>>
>>>
>>
>>>>> {color:blue;text-decoration:underline;}#yiv8120087482 a:visited,
>>
>>>
>>
>>>>> #yiv8120087482 span.yiv8120087482MsoHyperlinkFollowed
>>
>>>
>>
>>>>> {color:purple;text-decoration:underline;}#yiv8120087482
>>
>>>
>>
>>>>> p.yiv8120087482MsoAcetate, #yiv8120087482 li.yiv8120087482MsoAcetate,
>>
>>>
>>
>>>>> #yiv8120087482 div.yiv8120087482MsoAcetate
>>
>>>
>>
>>>>> {margin:0cm;margin-bottom:.0001pt;font-size:8.0pt;font-family:"Tahoma"
>>
>>>
>>
>>>>> ,
>>
>>>
>>
>>>>> "sans-serif";}#yiv8120087482 span.yiv8120087482EmailStyle17
>>
>>>
>>
>>>>> {font-family:"Garamond", "serif";color:windowtext;}#yiv8120087482
>>
>>>
>>
>>>>> span.yiv8120087482BalloonTextChar {font-family:"Tahoma",
>>
>>>
>>
>>>>> "sans-serif";}#yiv8120087482 .yiv8120087482MsoChpDefault {} _filtered
>>
>>>
>>
>>>>> #yiv8120087482 {margin:72.0pt 72.0pt 72.0pt 72.0pt;}#yiv8120087482
>>
>>>
>>
>>>>> div.yiv8120087482WordSection1 {}-->Hello GATE-Users, One of my
>>
>>>
>>
>>>>> colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on an
>>
>>>
>>
>>>>> Ubuntu server. The Geant4 built successfully. The problem is that the
>>
>>>
>>
>>>>> GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE
>>
>>>
>>
>>>>> parameter. The Geant4_USE_FILE is not set correctly and he would
>>>>> like to
>>
>>>
>>
>>>>> know what file/variable etc this is trying to point to? I would
>>
>>>
>>
>>>>> really appreciate your prompt response to this matter as we are
>>>>> looking
>>
>>>
>>
>>>>> forward to using GATE’s applications. Yours Sincerely, Farshid
>>
>>>
>>
>>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>>
>>>
>>
>>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>>
>>>
>>
>>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>>
>>>
>>
>>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>>
>>>
>>
>>>>> TCH
>>
>>>
>>
>>>>> Phone: 6244 4091 | Fax: 6244 2977
>>
>>>
>>
>>>>> |mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>> <mailto:Farshid.Salehzahi at act.gov.au> Clinical Support Services
>>
>>>
>>
>>>>> Canberra Hospital and Health Services We acknowledge the traditional
>>
>>>
>>
>>>>> custodians of the ACT, the Ngunnawal people. We acknowledge and
>>
>>>
>>
>>>>> respect their continuing culture and the contribution they make to
>>
>>>
>>
>>>>> the life of this city and this region.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> ---------------------------------------------------------------------
>>
>>>
>>
>>>>> -
>>
>>>
>>
>>>>> - This email, and any attachments, may be confidential and also
>>
>>>
>>
>>>>> privileged. If you are not the intended recipient, please notify the
>>
>>>
>>
>>>>> sender and delete all copies of this transmission along with any
>>
>>>
>>
>>>>> attachments immediately. You should not copy or use it for any
>>
>>>
>>
>>>>> purpose, nor disclose its contents to any other person.
>>
>>>
>>
>>>>> ---------------------------------------------------------------------
>>
>>>
>>
>>>>> -
>>
>>>
>>
>>>>> - _______________________________________________
>>
>>>
>>
>>>>> Gate-users mailing list
>>
>>>
>>
>>>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> -------------- next part -------------- An HTML attachment was
>>
>>>
>>
>>>>> scrubbed...
>>
>>>
>>
>>>>> URL:
>>
>>>
>>
>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>>
>>>
>>
>>>>> t achments/20170223/4ed4fbbd/attachment.html>
>>
>>>
>>
>>>>> -------------- next part -------------- A non-text attachment was
>>
>>>
>>
>>>>> scrubbed...
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>>>
>>
>>>>> Name: image001.jpg
>>
>>>
>>
>>>>> Type: image/jpeg
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>>>
>>
>>>>> Size: 4912 bytes
>>
>>>
>>
>>>>> Desc: not available
>>
>>>
>>
>>>>> URL:
>>
>>>
>>
>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>>
>>>
>>
>>>>> t achments/20170223/4ed4fbbd/attachment.jpg>
>>
>>>
>>
>>>>> -------------- next part -------------- A non-text attachment was
>>
>>>
>>
>>>>> scrubbed...
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>>>
>>
>>>>> Name: image002.png
>>
>>>
>>
>>>>> Type: image/png
>>
>>>
>>
>>>>> Size: 2353 bytes
>>
>>>
>>
>>>>> Desc: not available
>>
>>>
>>
>>>>> URL:
>>
>>>
>>
>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>>
>>>
>>
>>>>> t achments/20170223/4ed4fbbd/attachment.png>
>>
>>>
>>
>>>>> -------------- next part -------------- A non-text attachment was
>>
>>>
>>
>>>>> scrubbed...
>>
>>>
>>
>>>>> Name: image003.png
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>>>
>>
>>>>> Type: image/png
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>>>
>>
>>>>> Size: 2784 bytes
>>
>>>
>>
>>>>> Desc: not available
>>
>>>
>>
>>>>> URL:
>>
>>>
>>
>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>>
>>>
>>
>>>>> t achments/20170223/4ed4fbbd/attachment-0001.png>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> ------------------------------
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Subject: Digest Footer
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> _______________________________________________
>>
>>>
>>
>>>>> Gate-users mailing list
>>
>>>
>>
>>>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> ------------------------------
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> End of Gate-users Digest, Vol 129, Issue 39
>>
>>>
>>
>>>>> *******************************************
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> _______________________________________________
>>
>>>
>>
>>>>> Gate-users mailing list
>>
>>>
>>
>>>>> Gate-users at lists.opengatecollaboration.org
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> ------------------------------
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Message: 2
>>
>>>
>>
>>>> Date: Fri, 24 Feb 2017 17:19:36 +0100
>>
>>>
>>
>>>> From: David Boersma <david.boersma at physics.uu.se
>>
>>>
>>
>>>> <mailto:david.boersma at physics.uu.se>>
>>
>>>
>>
>>>> To: <gate-users at lists.opengatecollaboration.org
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>>
>>
>>>
>>
>>>> Subject: Re: [Gate-users] Σχετ: Gate-users Digest, Vol 129, Issue
>>
>>>
>>
>>>> 39 [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>> Message-ID: <870d2d04-6ca9-fb40-57e4-a9bea60f6f9a at physics.uu.se
>>
>>>
>>
>>>> <mailto:870d2d04-6ca9-fb40-57e4-a9bea60f6f9a at physics.uu.se>>
>>
>>>
>>
>>>> Content-Type: text/plain; charset="utf-8"; format=flowed
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Ahem. Oops. I wrote:
>>
>>>
>>
>>>>
>>
>>>
>>
>>>>> I just tried it on my own machine and I can > compile gate 7.2 just
>>
>>>
>>
>>>> fine with geant4 10.03.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> That is not correct.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> The cmake stage goes fine and the compile happily proceeds through
>>
>>>
>>
>>>> about 70% of the build but then actually fails for multiple reasons
>>
>>>
>>
>>>> (CLHEP namespace for units, and 'theParticleIterator' is no longer
>>
>>> #defined).
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> You can *not* compile Gate v7.2 with geant4 version 10.03.
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> My apologies for any confusion that my wrong statement may have
>>
>>>
>>
>>>> caused, David Boersma
>>
>>>
>>
>>>>
>>
>>>
>>
>>>> Den 24/02/2017 kl. 12:36, skrev David Boersma:
>>
>>>
>>
>>>>> Hi Farshid,
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Konstantinos is partly right about the incompatible geant4 versions.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> ROOT 6.* will not compile with Gate 7.2 (for a silly simple reason
>>
>>>
>>
>>>>> that is fixed on github, so in the upcoming release you'll be able to
>>
>>>
>>
>>>>> use ROOT6).
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Geant4 10.03 has not been *validated* for gate 7.2 (because geant4
>>
>>>
>>
>>>>> 10.03 was released long after gate 7.2 was released), but it should
>>
>>>
>>
>>>>> not give you this build error. I just tried it on my own machine and
>>
>>>
>>
>>>>> I can compile gate 7.2 just fine with geant4 10.03. So I strongly
>>
>>>
>>
>>>>> suspect that after you'll install (the latest patch version of)
>>
>>>
>>
>>>>> geant4
>>
>>>
>>
>>>>> 10.02 you will run into the same build error.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> (The rest of this mail I wrote already before Konstantinos wrote to
>>
>>>
>>
>>>>> the
>>
>>>
>>
>>>>> list...)
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> From those regex errors we can conclude that for some reason cmake
>>
>>>
>>
>>>>> does not manage to define the Geant4_VERSION variable. That is
>>
>>>
>>
>>>>> strange, because in the first line of the quoted output you show that
>>
>>>
>>
>>>>> it does find the installation prefix and it even quotes the version
>>
>>>
>>
>>>>> in parentheses. We need to collect more diagnostics, hopefully that
>>
>>>
>>
>>>>> will give us a clue.
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> (1) multiple installs?
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Do you have other geant4 installations on your system besides the one
>>
>>>
>>
>>>>> you intend to use, and could you check the output of
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> printenv | grep -i geant4
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> to see if maybe your shell environment somehow has a mixture of
>>
>>>
>>
>>>>> multiple versions?
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> (2) install method
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> How did you install geant4? Build from source or unpack a binary
>> tarball?
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> (3) check cmake and geant4-config
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Could you cd to the *build* directory where you most recently tried
>>
>>>
>>
>>>>> to run cmake, and then copy-paste the following commands into you
>>
>>>
>>
>>>>> shell, and then copy-paste the resulting output into a mail to the
>>>>> list?
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> echo $SHELL
>>
>>>
>>
>>>>> type cmake
>>
>>>
>>
>>>>> cmake --version
>>
>>>
>>
>>>>> grep Geant4_DIR CMakeCache.txt
>>
>>>
>>
>>>>> type geant4-config
>>
>>>
>>
>>>>> geant4-config --version
>>
>>>
>>
>>>>> geant4-config --prefix
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Maybe this helps to get a clue to what's going on on your system. If
>>
>>>
>>
>>>>> it doesn't then I can try to come up with some more diagnostic
>>>>> tests...
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Good luck,
>>
>>>
>>
>>>>> David
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>>
>>
>>>
>>
>>>>> Den 24/02/2017 kl. 11:40, skrev Konstantinos P. Chatzipapas, MSc:
>>
>>>
>>
>>>>>> Hello,
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> I see that you have install Geant4 V10.3.0 and Root V6.08/02 that
>>
>>>
>>
>>>>>> doesn't work for GATE V7.2.
>>
>>>
>>
>>>>>> You must install Geant4 V10.02.p03 and Root V5.34/36, so that GATE
>>
>>>
>>
>>>>>> V7.2 would work.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Kind Regards,
>>
>>>
>>
>>>>>> Konstantinos
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> -----------------------------------------------------
>>
>>>
>>
>>>>>> Konstantinos Chatzipapas
>>
>>>
>>
>>>>>> Medical Physicist, MSc
>>
>>>
>>
>>>>>> University of Patras
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> web page: Physics Magazine <http://www.physicsmag.com/>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Στις 7:19 π.μ. Παρασκευή, 24 Φεβρουαρίου 2017, ο/η "Salehzahi,
>>
>>>
>>
>>>>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>>
>>> <mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>> <mailto:Farshid.Salehzahi at act.gov.au%20%3cmailto:Farshid.Salehzahi at act.gov.au>>>
>>
>>
>>> έγραψε:
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Hi Konstantinos
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Thanks for taking the time to support.
>>
>>>
>>
>>>>>> I can confirm that source geant4.sh is in our bashrc.
>>
>>>
>>
>>>>>> I can also confirm that we ran GEANT4 example, which was completed
>>
>>>
>>
>>>>>> smoothly indicating the GEANT4 us running trouble-free. :)
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> I have copied the text below from the terminal, which shows the
>>
>>>
>>
>>>>>> errors we are facing for your further analysis and possible advice
>>
>>> please.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Below is the output from CMake specifying the errors encountered.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/..
>>
>>>
>>
>>>>>> (10.3.0)
>>
>>>
>>
>>>>>> CMake Error at CMakeLists.txt:67 (STRING):
>>
>>>
>>
>>>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>>
>>>
>>
>>>>>> total to
>>
>>>
>>
>>>>>> command.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> CMake Error at CMakeLists.txt:68 (STRING):
>>
>>>
>>
>>>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>>
>>>
>>
>>>>>> total to
>>
>>>
>>
>>>>>> command.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> CMake Error at CMakeLists.txt:69 (STRING):
>>
>>>
>>
>>>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>>
>>>
>>
>>>>>> total to
>>
>>>
>>
>>>>>> command.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.
>>
>>>
>>
>>>>>> Please use Geant4 10.1 or 10.2 distribution instead.
>>
>>>
>>
>>>>>> Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08 CMake Error
>>
>>>
>>
>>>>>> at
>>
>>>
>>
>>>>>> CMakeLists.txt:173 (INCLUDE):
>>
>>>
>>
>>>>>> include called with wrong number of arguments. include() only
>>
>>>
>>
>>>>>> takes one
>>
>>>
>>
>>>>>> file.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> CMake Error at CMakeLists.txt:175 (INCLUDE):
>>
>>>
>>
>>>>>> include could not find load file:
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Yours Sincerely
>>
>>>
>>
>>>>>> Farshid
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>>
>>>
>>
>>>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>>
>>>
>>
>>>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>>
>>>
>>
>>>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> TCH Phone: 6244 4091 | Fax: 6244 2977
>>
>>>
>>
>>>>>> |mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>>> <mailto:Farshid.Salehzahi at act.gov.au>
>>
>>>
>>
>>>>>> Clinical Support Services
>>
>>>
>>
>>>>>> Canberra Hospital and Health Services
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> -----Original Message-----
>>
>>>
>>
>>>>>> From: Gate-users
>>
>>>
>>
>>>>>> [mailto:gate-users-bounces at lists.opengatecollaboration.org
>>
>>>
>>
>>>>>> <mailto:gate-users-bounces at lists.opengatecollaboration.org>] On
>>
>>>
>>
>>>>>> Behalf Of gate-users-request at lists.opengatecollaboration.org
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> Sent: Thursday, 23 February 2017 7:53 PM
>>
>>>
>>
>>>>>> To: gate-users at lists.opengatecollaboration.org
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> Subject: Gate-users Digest, Vol 129, Issue 39
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Send Gate-users mailing list submissions to
>>
>>>
>>
>>>>>> gate-users at lists.opengatecollaboration.org
>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> To subscribe or unsubscribe via the World Wide Web, visit
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>>> or, via email, send a message with subject or body 'help' to
>>
>>>
>>
>>>>>> gate-users-request at lists.opengatecollaboration.org
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> You can reach the person managing the list at
>>
>>>
>>
>>>>>> gate-users-owner at lists.opengatecollaboration.org
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> When replying, please edit your Subject line so it is more specific
>>
>>>
>>
>>>>>> than
>>
>>>
>>
>>>>>> "Re: Contents of Gate-users digest..."
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Today's Topics:
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> 1. Σχετ: GATE Installation Problem [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>>>> (Konstantinos P. Chatzipapas, MSc)
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> --------------------------------------------------------------------
>>
>>>
>>
>>>>>> -
>>
>>>
>>
>>>>>> -
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Message: 1
>>
>>>
>>
>>>>>> Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)
>>
>>>
>>
>>>>>> From: "Konstantinos P. Chatzipapas, MSc" <konhat88 at yahoo.gr
>>
>>>
>>
>>>>>> <mailto:konhat88 at yahoo.gr>>
>>
>>>
>>
>>>>>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>>> <mailto:Farshid.Salehzahi at act.gov.au>>,
>>
>>>
>>
>>>>>> "gate-users at lists.opengatecollaboration.org
>>
>>>
>>
>>>>>> <mailto:gate-users at lists.opengatecollaboration.org>"
>>
>>>
>>
>>>>>> <gate-users at lists.opengatecollaboration.org
>>
>>>
>>
>>>>>> <mailto:gate-users at lists.opengatecollaboration.org>>
>>
>>>
>>
>>>>>> Subject: [Gate-users] Σχετ: GATE Installation Problem
>>
>>>
>>
>>>>>> [SEC=UNCLASSIFIED]
>>
>>>
>>
>>>>>> Message-ID: <1484310233.5675768.1487839960381 at mail.yahoo.com
>>
>>>
>>
>>>>>> <mailto:1484310233.5675768.1487839960381 at mail.yahoo.com>>
>>
>>>
>>
>>>>>> Content-Type: text/plain; charset="utf-8"
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Hello,
>>
>>>
>>
>>>>>> Have source your geant4.sh in your bashrc??
>>
>>>
>>
>>>>>> Best Regards,Konstantinos
>>
>>>
>>
>>>>>> ----------------------------------------------------- Konstantinos
>>
>>>
>>
>>>>>> Chatzipapas
>>
>>>
>>
>>>>>> Medical Physicist, MSc
>>
>>>
>>
>>>>>> University of Patras
>>
>>>
>>
>>>>>> web page: Physics Magazine
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi,
>>
>>>
>>
>>>>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>>> <mailto:Farshid.Salehzahi at act.gov.au>> έγραψε:
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> <!--#yiv8120087482 _filtered #yiv8120087482 {font-family:"Cambria
>>
>>>
>>
>>>>>> Math";panose-1:2 4 5 3 5 4 6 3 2 4;} _filtered #yiv8120087482
>>
>>>
>>
>>>>>> {font-family:Calibri;panose-1:2 15 5 2 2 2 4 3 2 4;} _filtered
>>
>>>
>>
>>>>>> #yiv8120087482 {font-family:Tahoma;panose-1:2 11 6 4 3 5 4 4 2 4;}
>>
>>>
>>
>>>>>> _filtered #yiv8120087482 {font-family:Garamond;panose-1:2 2 4 4 3 3
>>
>>>
>>
>>>>>> 1
>>
>>>
>>
>>>>>> 1
>>
>>>
>>
>>>>>> 8 3;}#yiv8120087482 #yiv8120087482 p.yiv8120087482MsoNormal,
>>
>>>
>>
>>>>>> #yiv8120087482 li.yiv8120087482MsoNormal, #yiv8120087482
>>
>>>
>>
>>>>>> div.yiv8120087482MsoNormal
>>
>>>
>>
>>>>>> {margin:0cm;margin-bottom:.0001pt;font-size:11.0pt;font-family:"Cali
>>
>>>
>>
>>>>>> b
>>
>>>
>>
>>>>>> ri",
>>
>>>
>>
>>>>>> "sans-serif";}#yiv8120087482
>>
>>>
>>
>>>>>> a:link, #yiv8120087482 span.yiv8120087482MsoHyperlink
>>
>>>
>>
>>>>>> {color:blue;text-decoration:underline;}#yiv8120087482 a:visited,
>>
>>>
>>
>>>>>> #yiv8120087482 span.yiv8120087482MsoHyperlinkFollowed
>>
>>>
>>
>>>>>> {color:purple;text-decoration:underline;}#yiv8120087482
>>
>>>
>>
>>>>>> p.yiv8120087482MsoAcetate, #yiv8120087482
>>
>>>
>>
>>>>>> li.yiv8120087482MsoAcetate,
>>
>>>
>>
>>>>>> #yiv8120087482 div.yiv8120087482MsoAcetate
>>
>>>
>>
>>>>>> {margin:0cm;margin-bottom:.0001pt;font-size:8.0pt;font-family:"Tahom
>>
>>>
>>
>>>>>> a
>>
>>>
>>
>>>>>> ",
>>
>>>
>>
>>>>>> "sans-serif";}#yiv8120087482 span.yiv8120087482EmailStyle17
>>
>>>
>>
>>>>>> {font-family:"Garamond", "serif";color:windowtext;}#yiv8120087482
>>
>>>
>>
>>>>>> span.yiv8120087482BalloonTextChar {font-family:"Tahoma",
>>
>>>
>>
>>>>>> "sans-serif";}#yiv8120087482 .yiv8120087482MsoChpDefault {}
>>
>>>
>>
>>>>>> _filtered
>>
>>>
>>
>>>>>> #yiv8120087482 {margin:72.0pt 72.0pt 72.0pt 72.0pt;}#yiv8120087482
>>
>>>
>>
>>>>>> div.yiv8120087482WordSection1 {}-->Hello GATE-Users, One of my
>>
>>>
>>
>>>>>> colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on
>>
>>>
>>
>>>>>> an Ubuntu server. The Geant4 built successfully. The problem is that
>>
>>>
>>
>>>>>> the GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE
>>
>>>
>>
>>>>>> parameter. The Geant4_USE_FILE is not set correctly and he would
>> like to
>>
>>>
>>
>>>>>> know what file/variable etc this is trying to point to? I would
>>
>>>
>>
>>>>>> really appreciate your prompt response to this matter as we are
>>>>>> looking
>>
>>>
>>
>>>>>> forward to using GATE’s applications. Yours Sincerely, Farshid
>>
>>>
>>
>>>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>>
>>>
>>
>>>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>>
>>>
>>
>>>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>>
>>>
>>
>>>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>>
>>>
>>
>>>>>> TCH
>>
>>>
>>
>>>>>> Phone: 6244 4091 | Fax: 6244 2977
>>
>>>
>>
>>>>>> |mailto:Farshid.Salehzahi at act.gov.au
>>
>>>
>>
>>>>>> <mailto:Farshid.Salehzahi at act.gov.au> Clinical Support Services
>>
>>>
>>
>>>>>> Canberra Hospital and Health Services We acknowledge the
>>
>>>
>>
>>>>>> traditional custodians of the ACT, the Ngunnawal people. We
>>
>>>
>>
>>>>>> acknowledge and respect their continuing culture and the
>>
>>>
>>
>>>>>> contribution they make to the life of this city and this region.
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> --------------------------------------------------------------------
>>
>>>
>>
>>>>>> -
>>
>>>
>>
>>>>>> -- This email, and any attachments, may be confidential and also
>>
>>>
>>
>>>>>> privileged. If you are not the intended recipient, please notify the
>>
>>>
>>
>>>>>> sender and delete all copies of this transmission along with any
>>
>>>
>>
>>>>>> attachments immediately. You should not copy or use it for any
>>
>>>
>>
>>>>>> purpose, nor disclose its contents to any other person.
>>
>>>
>>
>>>>>> --------------------------------------------------------------------
>>
>>>
>>
>>>>>> -
>>
>>>
>>
>>>>>> -- _______________________________________________
>>
>>>
>>
>>>>>> Gate-users mailing list
>>
>>>
>>
>>>>>> Gate-users at lists.opengatecollaboration.org
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> -------------- next part -------------- An HTML attachment was
>>
>>>
>>
>>>>>> scrubbed...
>>
>>>
>>
>>>>>> URL:
>>
>>>
>>
>>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>>
>>>
>>
>>>>>> t tachments/20170223/4ed4fbbd/attachment.html>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> -------------- next part -------------- A non-text attachment was
>>
>>>
>>
>>>>>> scrubbed...
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>>
>>>>>> Name: image001.jpg
>>
>>>
>>
>>>>>> Type: image/jpeg
>>
>>>
>>
>>>>>> Size: 4912 bytes
>>
>>>
>>
>>>>>> Desc: not available
>>
>>>
>>
>>>>>> URL:
>>
>>>
>>
>>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>>
>>>
>>
>>>>>> t tachments/20170223/4ed4fbbd/attachment.jpg>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> -------------- next part -------------- A non-text attachment was
>>
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>>>>>> scrubbed...
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>>>>>> Name: image002.png
>>
>>>
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>>>>>> Type: image/png
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>>>
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>>>>>> Size: 2353 bytes
>>
>>>
>>
>>>>>> Desc: not available
>>
>>>
>>
>>>>>> URL:
>>
>>>
>>
>>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>>
>>>
>>
>>>>>> t tachments/20170223/4ed4fbbd/attachment.png>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> -------------- next part -------------- A non-text attachment was
>>
>>>
>>
>>>>>> scrubbed...
>>
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>>
>>>>>> Name: image003.png
>>
>>>
>>
>>>>>> Type: image/png
>>
>>>
>>
>>>>>> Size: 2784 bytes
>>
>>>
>>
>>>>>> Desc: not available
>>
>>>
>>
>>>>>> URL:
>>
>>>
>>
>>>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>>
>>>
>>
>>>>>> t tachments/20170223/4ed4fbbd/attachment-0001.png>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> ------------------------------
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> Subject: Digest Footer
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> _______________________________________________
>>
>>>
>>
>>>>>> Gate-users mailing list
>>
>>>
>>
>>>>>> Gate-users at lists.opengatecollaboration.org
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> ------------------------------
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> End of Gate-users Digest, Vol 129, Issue 39
>>
>>>
>>
>>>>>> *******************************************
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>>
>>
>>>
>>
>>>>>> _______________________________________________
>>
>>>
>>
>>>>>> Gate-users mailing list
>>
>>>
>>
>>>>>> Gate-users at lists.opengatecollaboration.org
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>>
>>>
>>
>>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
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>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
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>>>>
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>>
>>>> ------------------------------
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>>>> Subject: Digest Footer
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>>
>>>> ------------------------------
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>>>
>>
>>>>
>>
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>>>> End of Gate-users Digest, Vol 129, Issue 41
>>
>>>
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>>>> *******************************************
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>> Subject: Digest Footer
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>> End of Gate-users Digest, Vol 130, Issue 5
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>> ******************************************
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