[Gate-users] Gate-users Digest, Vol 130, Issue 5 [SEC=UNCLASSIFIED]
Salehzahi, Farshid (Health)
Farshid.Salehzahi at act.gov.au
Wed Mar 8 05:43:26 CET 2017
Hello David
Thanks for your time and advice again.
Here is what happened:
cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-install/lib/Geant4-10.2.3$ ls *.cmake
Geant4Config.cmake Geant4LibraryDepends-relwithdebinfo.cmake
Geant4ConfigVersion.cmake UseGeant4.cmake
Geant4LibraryDepends.cmake
So I do have the five CMake files, which is good.
Next, entering:
printenv | grep -i geant4
which geant4-config
which root-config
resulted in confirmation that a clean bash session was implemented.
As you can see, the same error occurs:
CMake Error at CMakeLists.txt:67 (STRING):
string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
command.
CMake Error at CMakeLists.txt:68 (STRING):
string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
command.
CMake Error at CMakeLists.txt:69 (STRING):
string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
command.
Warning! GATE version 7.2 is not validated for Geant4 . distribution. Please
use Geant4 10.1 or 10.2 distribution instead.
CMake Error at CMakeLists.txt:173 (INCLUDE):
include called with wrong number of arguments. include() only takes one
file.
CMake Error at CMakeLists.txt:175 (INCLUDE):
include could not find load file:
/home/cneeley/apps/GATE/gate_v7.2/source/general/include
Your current Geant4 version is ... System cannot identify which Geant version is being used.
It seems like manually adding the Geant4_DIR might be an approach?
Thanks for helping us.
Cheers
Farshid
Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM)
Head of Molecular and Nuclear Medicine Physics Section
Medical Physics and Radiation Engineering
ANU Visiting Fellow
Research School of Physics and Engineering,
ANU College of Physical and Mathematical Sciences
TCH Phone: 6244 4091 | Fax: 6244 2977 |mailto:Farshid.Salehzahi at act.gov.au
Clinical Support Services
Canberra Hospital and Health Services
We acknowledge the traditional custodians of the ACT, the Ngunnawal people. We acknowledge and respect their continuing culture and the contribution they make to the life of this city and this region.
-----Original Message-----
From: Gate-users [mailto:gate-users-bounces at lists.opengatecollaboration.org] On Behalf Of gate-users-request at lists.opengatecollaboration.org
Sent: Tuesday, 7 March 2017 9:15 PM
To: gate-users at lists.opengatecollaboration.org
Subject: Gate-users Digest, Vol 130, Issue 5
Send Gate-users mailing list submissions to
gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
To subscribe or unsubscribe via the World Wide Web, visit
http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
or, via email, send a message with subject or body 'help' to
gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
You can reach the person managing the list at
gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..."
Today's Topics:
1. Re: Gate-users Digest, Vol 129, Issue 41 [SEC=UNCLASSIFIED]
(David Boersma)
----------------------------------------------------------------------
Message: 1
Date: Tue, 7 Mar 2017 11:14:49 +0100
From: David Boersma <david.boersma at physics.uu.se<mailto:david.boersma at physics.uu.se>>
To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au<mailto:Farshid.Salehzahi at act.gov.au>>, GATE
users <gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>>
Subject: Re: [Gate-users] Gate-users Digest, Vol 129, Issue 41
[SEC=UNCLASSIFIED]
Message-ID: <03e75a01-b435-687c-67be-f2bbcc00c10a at physics.uu.se<mailto:03e75a01-b435-687c-67be-f2bbcc00c10a at physics.uu.se>>
Content-Type: text/plain; charset="utf-8"; format=flowed
Hi Farshid,
I'm sorry, I meant to keep this on the list, in my hurry I mailed to you personally last week.
(Other mailing list readers: I asked Farshid to grep for Geant4_DIR in the GATE build directory, previously he misunderstood my question and did the grep in the geant4 build directory. From his answer we can see that the grep in the GATE build directory gives an empty result.)
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> grep Geant4_DIR
> CMakeCache.txt
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> type geant4-config
>
> geant4-config is
> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config
>
You show that a grep for Geant4_DIR in CMakeCache.txt in your build
directory comes up empty. That is odd, because geant4-config *is* found
and the --prefix output points to your geant4 installation. Still, it is
somehow expected, because from the REGEX errors that you reported
earlier it is clear that cmake somehow cannot find your geant4.
So... could you verify that you do indeed have the necessary cmake files:
ls
/home/cneeley/apps/Geant4/Old/geant4.10.2-install/lib/Geant4-10.2.3/*.cmake
If this does not give you some (for me it's five) cmake files, then your
installation is broken.
If you do have those files, then it's time to cast suspicions on your
.bashrc file. :)
Could you please temporary rename your .bashrc, e.g.:
cd
mv .bashrc bashrc_saved
If you have a .profile, .bash_login and/or a .bash_profile in your home
directory, please rename those too. Keep the terminal in which you do
this open, so that you can undo these changes later, after we're done
with this debugging experiment.
(Aside: in general, messing with your .bashrc/login/profile files can be
risky, because if you do it wrong then you can lock yourself out of your
account and then you have to send a very painful and sad email to your
sysadmin. Keeping the shell session open running allows you to fix
things if in your test logins in a fresh new terminal window you find
out that you screwed up.)
And now start a fresh login (from your mac into the linux machine).
Make sure that you indeed have a pristine bash session, no geant4 or
ROOT in your paths (unless ROOT was installed with /usr or /usr/local
installation prefix, but I think that is not the case on your system),
by checking that you get no output at all from these commands:
printenv | grep -i geant4
which geant4-config
which root-config
Now manually run the commands to add geant4 and ROOT to your environment:
source /path/to/geant4/bin/geant4.sh
source /path/to/root5/bin/thisroot.sh
(Replace "/path/to/X" with the appropriate path... If ROOT is already in
your PATH, with /usr or /usr/local, then you can omit that second source
command.)
Now make a new empty gate build directory, cd into it, and and run:
ccmake ../gate_v7.2
(If you named your gate source directory differently, then change the
argument to this command accordingly.)
Could you let us know if this works any better?
Good luck,
David Boersma
Den 02/03/2017 kl. 04:11, skrev Salehzahi, Farshid (Health):
> Hello David
>
>
>
> Thanks for highlighting that.
>
> Please find below the information requested:
>
>
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> echo $SHELL
>
> /bin/bash
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> type cmake
>
> cmake is /usr/bin/cmake
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> cmake --version
>
> cmake version 3.5.1
>
> CMake suite maintained and supported by Kitware (kitware.com/cmake).
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> grep Geant4_DIR
> CMakeCache.txt
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> type geant4-config
>
> geant4-config is
> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> geant4-config --version
>
> 10.2.3
>
>
>
> cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/GATE/gate_v7.2-build$> geant4-config --prefix
>
> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/..
>
>
>
>
>
> By the way I thought it was worth mentioning that the LINUX environment
> (local server) where the Geant4 and GATE libraries are built is being
> accessed remotely via a Mac.
>
>
>
> Please let me know if you see any issues.
>
> Cheers
>
> Farshid
>
>
>
> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM)
>
> Head of Molecular and Nuclear Medicine Physics Section
>
> Medical Physics and Radiation Engineering
>
> ANU Visiting Fellow
>
> Research School of Physics and Engineering,
>
> ANU College of Physical and Mathematical Sciences
>
>
>
> TCH Phone: 6244 4091 | Fax: 6244 2977 |mailto:Farshid.Salehzahi at act.gov.au
>
> Clinical Support Services
>
> Canberra Hospital and Health Services
>
>
>
> -----Original Message-----
> From: David Boersma [mailto:david.boersma at physics.uu.se]
> Sent: Thursday, 2 March 2017 6:02 AM
> To: Salehzahi, Farshid (Health)
> Subject: Re: [Gate-users] Gate-users Digest, Vol 129, Issue 41
> [SEC=UNCLASSIFIED]
>
>
>
> Hi Farshid,
>
>
>
> Question 3 was about the build directory of GATE, not geant4.
>
> Could you do those checks on the CMakeCache.txt of the gate build directory?
>
>
>
> David
>
>
>
> On 02/27/2017 06:19 AM, Salehzahi, Farshid (Health) wrote:
>
>> Dear David et. al
>
>> Thanks very much for the time and effort you put in to this issue for
>
>> us. We do really appreciate that.
>
>> The following highlighted section addresses all your comments. Please
>
>> let me know if you need anything else to verify the issue for us.
>
>> Still having the same issues. What should Geant4_DIR be set to? I can
>
>> add a CMake parameter manually perhaps?
>
>>
>
>> Had tried to build Gate_v7.2 with Geant4.10.2 earlier and had the same
>
>> errors. For my Geant4 only projects I will be using the latest build
>
>> (10.3). I had mistakenly pasted the output from an attempt to build
>
>> Gate with the Geant4.10.3 version even though the problem was
>
>> identical with version 10.2.
>
>>
>
>> I have now built Root5.34/36.
>
>>
>
>>
>
>> 1 ) Here is the result from the environment variable query.
>
>>
>
>> cneeley at maryam-mpre-01:~/Desktop$ printenv | grep -i geant4
>
>> G4LEVELGAMMADATA=/home/cneeley/apps/Geant4/Old/Packages10.2/PhotonEvap
>
>> oration3.2
>
>> G4NEUTRONXSDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4NEUTRONXS
>
>> 1.4
>
>> G4LEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4EMLOW6.48
>
>> LD_LIBRARY_PATH=/home/cneeley/apps/Geant4/Old/geant4.10.2-install/lib
>
>> G4NEUTRONHPDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4NDL4.5
>
>> G4ENSDFSTATEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4ENSDFSTA
>
>> TE1.2.3
>
>> G4RADIOACTIVEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/Radioacti
>
>> veDecay4.3.2
>
>> G4ABLADATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4ABLA3.0
>
>> PATH=/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin:/home/cneel
>
>> ey/bin:/home/cneeley/.local/bin:/home/cneeley/apps/Qt5.8/5.8/gcc_64/bi
>
>> n:/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin:/usr/local/sbi
>
>> n:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/g
>
>> ames:/snap/bin
>
>> G4PIIDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4PII1.3
>
>> G4SAIDXSDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4SAIDDATA1.1
>
>> G4REALSURFACEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/RealSurfa
>
>> ce1.0
>
>>
>
>> 2) I built Geant4 from the source
>
>>
>
>>
>
>> 3)
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$> echo
>
>> $SHELL /bin/bash
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> type cmake
>
>> cmake is /usr/bin/cmake
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$> cmake
>
>> --version cmake version 3.5.1
>
>>
>
>> CMake suite maintained and supported by Kitware (kitware.com/cmake).
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$> grep
>
>> Geant4_DIR CMakeCache.txt
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$> type
>
>> geant4-config geant4-config is
>
>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>
>> geant4-config --version
>
>> 10.2.3
>
>> cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$<mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
> <mailto:cneeley at maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$>
>
>> geant4-config --prefix
>
>> /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/..
>
>>
>
>>
>
>> The only Geant4_DIR found in the CMakeCache.txt file was:
>
>>
>
>> Geant4_BINARY_DIR:STATIC=/home/cneeley/apps/Geant4/Old/geant4.10.2-bui
>
>> ld
>
>>
>
>> Geant4_SOURCE_DIR:STATIC=/home/cneeley/apps/Geant4/Old/geant4.10.02.p0
>
>> 3
>
>>
>
>> Yours Sincerely
>
>> Farshid
>
>>
>
>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>
>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>
>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>
>> and Engineering, ANU College of Physical and Mathematical Sciences
>
>>
>
>>
>
>> -----Original Message-----
>
>> From: Gate-users
>
>> [mailto:gate-users-bounces at lists.opengatecollaboration.org] On Behalf
>
>> Of gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>> Sent: Saturday, 25 February 2017 3:20 AM
>
>> To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
> <mailto:gate-users at lists.opengatecollaboration.org>
>
>> Subject: Gate-users Digest, Vol 129, Issue 41
>
>>
>
>> Send Gate-users mailing list submissions to
>
>> gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
> <mailto:gate-users at lists.opengatecollaboration.org>
>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>
>
>> To subscribe or unsubscribe via the World Wide Web, visit
>
>>
>
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>> or, via email, send a message with subject or body 'help' to
>
>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>
>
>> You can reach the person managing the list at
>
>> gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>>
>
>> When replying, please edit your Subject line so it is more specific
>
>> than
>
>> "Re: Contents of Gate-users digest..."
>
>>
>
>>
>
>> Today's Topics:
>
>>
>
>> 1. Re: Σχετ: Gate-users Digest, Vol 129, Issue 39
>
>> [SEC=UNCLASSIFIED] (David Boersma)
>
>> 2. Re: Σχετ: Gate-users Digest, Vol 129, Issue 39
>
>> [SEC=UNCLASSIFIED] (David Boersma)
>
>>
>
>>
>
>> ----------------------------------------------------------------------
>
>>
>
>> Message: 1
>
>> Date: Fri, 24 Feb 2017 12:36:02 +0100
>
>> From: David Boersma <david.boersma at physics.uu.se
>
>> <mailto:david.boersma at physics.uu.se>>
>
>> To: <gate-users at lists.opengatecollaboration.org
>
>> <mailto:gate-users at lists.opengatecollaboration.org>>
>
>> Subject: Re: [Gate-users] Σχετ: Gate-users Digest, Vol 129, Issue
>
>> 39 [SEC=UNCLASSIFIED]
>
>> Message-ID: <2616684a-47ec-ce92-4190-fd876a719491 at physics.uu.se
>
>> <mailto:2616684a-47ec-ce92-4190-fd876a719491 at physics.uu.se>>
>
>> Content-Type: text/plain; charset="utf-8"; format=flowed
>
>>
>
>> Hi Farshid,
>
>>
>
>> Konstantinos is partly right about the incompatible geant4 versions.
>
>>
>
>> ROOT 6.* will not compile with Gate 7.2 (for a silly simple reason
>
>> that is fixed on github, so in the upcoming release you'll be able to
> use ROOT6).
>
>>
>
>> Geant4 10.03 has not been *validated* for gate 7.2 (because geant4
>
>> 10.03 was released long after gate 7.2 was released), but it should
>
>> not give you this build error. I just tried it on my own machine and I
>
>> can compile gate 7.2 just fine with geant4 10.03. So I strongly
>
>> suspect that after you'll install (the latest patch version of) geant4
>
>> 10.02 you will run into the same build error.
>
>>
>
>> (The rest of this mail I wrote already before Konstantinos wrote to
>
>> the
>
>> list...)
>
>>
>
>> From those regex errors we can conclude that for some reason cmake
>
>> does not manage to define the Geant4_VERSION variable. That is
>
>> strange, because in the first line of the quoted output you show that
>
>> it does find the installation prefix and it even quotes the version in
>
>> parentheses. We need to collect more diagnostics, hopefully that will
>
>> give us a clue.
>
>>
>
>> (1) multiple installs?
>
>>
>
>> Do you have other geant4 installations on your system besides the one
>
>> you intend to use, and could you check the output of
>
>>
>
>> printenv | grep -i geant4
>
>>
>
>> to see if maybe your shell environment somehow has a mixture of
>
>> multiple versions?
>
>>
>
>> (2) install method
>
>>
>
>> How did you install geant4? Build from source or unpack a binary tarball?
>
>>
>
>> (3) check cmake and geant4-config
>
>>
>
>> Could you cd to the *build* directory where you most recently tried to
>
>> run cmake, and then copy-paste the following commands into you shell,
>
>> and then copy-paste the resulting output into a mail to the list?
>
>>
>
>> echo $SHELL
>
>> type cmake
>
>> cmake --version
>
>> grep Geant4_DIR CMakeCache.txt
>
>> type geant4-config
>
>> geant4-config --version
>
>> geant4-config --prefix
>
>>
>
>> Maybe this helps to get a clue to what's going on on your system. If
>
>> it doesn't then I can try to come up with some more diagnostic tests...
>
>>
>
>> Good luck,
>
>> David
>
>>
>
>>
>
>> Den 24/02/2017 kl. 11:40, skrev Konstantinos P. Chatzipapas, MSc:
>
>>> Hello,
>
>>>
>
>>> I see that you have install Geant4 V10.3.0 and Root V6.08/02 that
>
>>> doesn't work for GATE V7.2.
>
>>> You must install Geant4 V10.02.p03 and Root V5.34/36, so that GATE
>
>>> V7.2 would work.
>
>>>
>
>>> Kind Regards,
>
>>> Konstantinos
>
>>>
>
>>> -----------------------------------------------------
>
>>> Konstantinos Chatzipapas
>
>>> Medical Physicist, MSc
>
>>> University of Patras
>
>>>
>
>>> web page: Physics Magazine <http://www.physicsmag.com/>
>
>>>
>
>>>
>
>>> Στις 7:19 π.μ. Παρασκευή, 24 Φεβρουαρίου 2017, ο/η "Salehzahi,
>
>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
> <mailto:Farshid.Salehzahi at act.gov.au
> <mailto:Farshid.Salehzahi at act.gov.au%20%3cmailto:Farshid.Salehzahi at act.gov.au>>>
> έγραψε:
>
>>>
>
>>>
>
>>> Hi Konstantinos
>
>>>
>
>>> Thanks for taking the time to support.
>
>>> I can confirm that source geant4.sh is in our bashrc.
>
>>> I can also confirm that we ran GEANT4 example, which was completed
>
>>> smoothly indicating the GEANT4 us running trouble-free. :)
>
>>>
>
>>> I have copied the text below from the terminal, which shows the
>
>>> errors we are facing for your further analysis and possible advice
> please.
>
>>>
>
>>> Below is the output from CMake specifying the errors encountered.
>
>>>
>
>>> Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/..
>
>>> (10.3.0) CMake Error at CMakeLists.txt:67 (STRING):
>
>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
> total to
>
>>> command.
>
>>>
>
>>>
>
>>> CMake Error at CMakeLists.txt:68 (STRING):
>
>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
> total to
>
>>> command.
>
>>>
>
>>>
>
>>> CMake Error at CMakeLists.txt:69 (STRING):
>
>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
> total to
>
>>> command.
>
>>>
>
>>>
>
>>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.
>
>>> Please use Geant4 10.1 or 10.2 distribution instead.
>
>>> Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08 CMake Error at
>
>>> CMakeLists.txt:173 (INCLUDE):
>
>>> include called with wrong number of arguments. include() only
> takes one
>
>>> file.
>
>>>
>
>>>
>
>>> CMake Error at CMakeLists.txt:175 (INCLUDE):
>
>>> include could not find load file:
>
>>>
>
>>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include
>
>>>
>
>>> Yours Sincerely
>
>>> Farshid
>
>>>
>
>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>
>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>
>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>
>>> and Engineering, ANU College of Physical and Mathematical Sciences
>
>>>
>
>>> TCH Phone: 6244 4091 | Fax: 6244 2977
>
>>> |mailto:Farshid.Salehzahi at act.gov.au
>
>>> |<mailto:Farshid.Salehzahi at act.gov.au>
>
>>> Clinical Support Services
>
>>> Canberra Hospital and Health Services
>
>>>
>
>>>
>
>>> -----Original Message-----
>
>>> From: Gate-users
>
>>> [mailto:gate-users-bounces at lists.opengatecollaboration.org
>
>>> <mailto:gate-users-bounces at lists.opengatecollaboration.org>] On
>
>>> Behalf Of gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>> Sent: Thursday, 23 February 2017 7:53 PM
>
>>> To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
> <mailto:gate-users at lists.opengatecollaboration.org>
>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>> Subject: Gate-users Digest, Vol 129, Issue 39
>
>>>
>
>>> Send Gate-users mailing list submissions to
>
>>> gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
> <mailto:gate-users at lists.opengatecollaboration.org>
>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>>
>
>>> To subscribe or unsubscribe via the World Wide Web, visit
>
>>>
>
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>> or, via email, send a message with subject or body 'help' to
>
>>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>>
>
>>> You can reach the person managing the list at
>
>>> gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>>>
>
>>> When replying, please edit your Subject line so it is more specific
>
>>> than
>
>>> "Re: Contents of Gate-users digest..."
>
>>>
>
>>>
>
>>> Today's Topics:
>
>>>
>
>>> 1. Σχετ: GATE Installation Problem [SEC=UNCLASSIFIED]
>
>>> (Konstantinos P. Chatzipapas, MSc)
>
>>>
>
>>>
>
>>> ---------------------------------------------------------------------
>
>>> -
>
>>>
>
>>> Message: 1
>
>>> Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)
>
>>> From: "Konstantinos P. Chatzipapas, MSc" <konhat88 at yahoo.gr
>
>>> <mailto:konhat88 at yahoo.gr>>
>
>>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>
>>> <mailto:Farshid.Salehzahi at act.gov.au>>,
>
>>> "gate-users at lists.opengatecollaboration.org
>
>>> <mailto:gate-users at lists.opengatecollaboration.org>"
>
>>> <gate-users at lists.opengatecollaboration.org
>
>>> <mailto:gate-users at lists.opengatecollaboration.org>>
>
>>> Subject: [Gate-users] Σχετ: GATE Installation Problem
>
>>> [SEC=UNCLASSIFIED]
>
>>> Message-ID: <1484310233.5675768.1487839960381 at mail.yahoo.com
>
>>> <mailto:1484310233.5675768.1487839960381 at mail.yahoo.com>>
>
>>> Content-Type: text/plain; charset="utf-8"
>
>>>
>
>>> Hello,
>
>>> Have source your geant4.sh in your bashrc??
>
>>> Best Regards,Konstantinos
>
>>> ----------------------------------------------------- Konstantinos
>
>>> Chatzipapas
>
>>> Medical Physicist, MSc
>
>>> University of Patras
>
>>> web page: Physics Magazine
>
>>>
>
>>> Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi,
>
>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>
>>> <mailto:Farshid.Salehzahi at act.gov.au>> έγραψε:
>
>>>
>
>>>
>
>>> <!--#yiv8120087482 _filtered #yiv8120087482 {font-family:"Cambria
>
>>> Math";panose-1:2 4 5 3 5 4 6 3 2 4;} _filtered #yiv8120087482
>
>>> {font-family:Calibri;panose-1:2 15 5 2 2 2 4 3 2 4;} _filtered
>
>>> #yiv8120087482 {font-family:Tahoma;panose-1:2 11 6 4 3 5 4 4 2 4;}
>
>>> _filtered #yiv8120087482 {font-family:Garamond;panose-1:2 2 4 4 3 3 1
>
>>> 1
>
>>> 8 3;}#yiv8120087482 #yiv8120087482 p.yiv8120087482MsoNormal,
>
>>> #yiv8120087482 li.yiv8120087482MsoNormal, #yiv8120087482
>
>>> div.yiv8120087482MsoNormal
>
>>> {margin:0cm;margin-bottom:.0001pt;font-size:11.0pt;font-family:"Calib
>
>>> r i", "sans-serif";}#yiv8120087482 a:link, #yiv8120087482
>
>>> span.yiv8120087482MsoHyperlink
>
>>> {color:blue;text-decoration:underline;}#yiv8120087482 a:visited,
>
>>> #yiv8120087482 span.yiv8120087482MsoHyperlinkFollowed
>
>>> {color:purple;text-decoration:underline;}#yiv8120087482
>
>>> p.yiv8120087482MsoAcetate, #yiv8120087482 li.yiv8120087482MsoAcetate,
>
>>> #yiv8120087482 div.yiv8120087482MsoAcetate
>
>>> {margin:0cm;margin-bottom:.0001pt;font-size:8.0pt;font-family:"Tahoma"
>
>>> ,
>
>>> "sans-serif";}#yiv8120087482 span.yiv8120087482EmailStyle17
>
>>> {font-family:"Garamond", "serif";color:windowtext;}#yiv8120087482
>
>>> span.yiv8120087482BalloonTextChar {font-family:"Tahoma",
>
>>> "sans-serif";}#yiv8120087482 .yiv8120087482MsoChpDefault {} _filtered
>
>>> #yiv8120087482 {margin:72.0pt 72.0pt 72.0pt 72.0pt;}#yiv8120087482
>
>>> div.yiv8120087482WordSection1 {}-->Hello GATE-Users, One of my
>
>>> colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on an
>
>>> Ubuntu server. The Geant4 built successfully. The problem is that the
>
>>> GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE
>
>>> parameter. The Geant4_USE_FILE is not set correctly and he would like to
>
>>> know what file/variable etc this is trying to point to? I would
>
>>> really appreciate your prompt response to this matter as we are looking
>
>>> forward to using GATE’s applications. Yours Sincerely, Farshid
>
>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>
>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>
>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>
>>> and Engineering, ANU College of Physical and Mathematical Sciences
>
>>> TCH
>
>>> Phone: 6244 4091 | Fax: 6244 2977
>
>>> |mailto:Farshid.Salehzahi at act.gov.au
>
>>> <mailto:Farshid.Salehzahi at act.gov.au> Clinical Support Services
>
>>> Canberra Hospital and Health Services We acknowledge the traditional
>
>>> custodians of the ACT, the Ngunnawal people. We acknowledge and
>
>>> respect their continuing culture and the contribution they make to
>
>>> the life of this city and this region.
>
>>>
>
>>> ---------------------------------------------------------------------
>
>>> -
>
>>> - This email, and any attachments, may be confidential and also
>
>>> privileged. If you are not the intended recipient, please notify the
>
>>> sender and delete all copies of this transmission along with any
>
>>> attachments immediately. You should not copy or use it for any
>
>>> purpose, nor disclose its contents to any other person.
>
>>> ---------------------------------------------------------------------
>
>>> -
>
>>> - _______________________________________________
>
>>> Gate-users mailing list
>
>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>
>
>>>
>
>>> -------------- next part -------------- An HTML attachment was
>
>>> scrubbed...
>
>>> URL:
>
>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>
>>> t achments/20170223/4ed4fbbd/attachment.html>
>
>>> -------------- next part -------------- A non-text attachment was
>
>>> scrubbed...
>
>>> Name: image001.jpg
>
>>> Type: image/jpeg
>
>>> Size: 4912 bytes
>
>>> Desc: not available
>
>>> URL:
>
>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>
>>> t achments/20170223/4ed4fbbd/attachment.jpg>
>
>>> -------------- next part -------------- A non-text attachment was
>
>>> scrubbed...
>
>>> Name: image002.png
>
>>> Type: image/png
>
>>> Size: 2353 bytes
>
>>> Desc: not available
>
>>> URL:
>
>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>
>>> t achments/20170223/4ed4fbbd/attachment.png>
>
>>> -------------- next part -------------- A non-text attachment was
>
>>> scrubbed...
>
>>> Name: image003.png
>
>>> Type: image/png
>
>>> Size: 2784 bytes
>
>>> Desc: not available
>
>>> URL:
>
>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/at
>
>>> t achments/20170223/4ed4fbbd/attachment-0001.png>
>
>>>
>
>>> ------------------------------
>
>>>
>
>>> Subject: Digest Footer
>
>>>
>
>>> _______________________________________________
>
>>> Gate-users mailing list
>
>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>
>
>>> ------------------------------
>
>>>
>
>>> End of Gate-users Digest, Vol 129, Issue 39
>
>>> *******************************************
>
>>>
>
>>>
>
>>>
>
>>>
>
>>> _______________________________________________
>
>>> Gate-users mailing list
>
>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>
>
>>
>
>>
>
>> ------------------------------
>
>>
>
>> Message: 2
>
>> Date: Fri, 24 Feb 2017 17:19:36 +0100
>
>> From: David Boersma <david.boersma at physics.uu.se
>
>> <mailto:david.boersma at physics.uu.se>>
>
>> To: <gate-users at lists.opengatecollaboration.org
>
>> <mailto:gate-users at lists.opengatecollaboration.org>>
>
>> Subject: Re: [Gate-users] Σχετ: Gate-users Digest, Vol 129, Issue
>
>> 39 [SEC=UNCLASSIFIED]
>
>> Message-ID: <870d2d04-6ca9-fb40-57e4-a9bea60f6f9a at physics.uu.se
>
>> <mailto:870d2d04-6ca9-fb40-57e4-a9bea60f6f9a at physics.uu.se>>
>
>> Content-Type: text/plain; charset="utf-8"; format=flowed
>
>>
>
>> Ahem. Oops. I wrote:
>
>>
>
>>> I just tried it on my own machine and I can > compile gate 7.2 just
>
>> fine with geant4 10.03.
>
>>
>
>> That is not correct.
>
>>
>
>> The cmake stage goes fine and the compile happily proceeds through
>
>> about 70% of the build but then actually fails for multiple reasons
>
>> (CLHEP namespace for units, and 'theParticleIterator' is no longer
> #defined).
>
>>
>
>> You can *not* compile Gate v7.2 with geant4 version 10.03.
>
>>
>
>> My apologies for any confusion that my wrong statement may have
>
>> caused, David Boersma
>
>>
>
>> Den 24/02/2017 kl. 12:36, skrev David Boersma:
>
>>> Hi Farshid,
>
>>>
>
>>> Konstantinos is partly right about the incompatible geant4 versions.
>
>>>
>
>>> ROOT 6.* will not compile with Gate 7.2 (for a silly simple reason
>
>>> that is fixed on github, so in the upcoming release you'll be able to
>
>>> use ROOT6).
>
>>>
>
>>> Geant4 10.03 has not been *validated* for gate 7.2 (because geant4
>
>>> 10.03 was released long after gate 7.2 was released), but it should
>
>>> not give you this build error. I just tried it on my own machine and
>
>>> I can compile gate 7.2 just fine with geant4 10.03. So I strongly
>
>>> suspect that after you'll install (the latest patch version of)
>
>>> geant4
>
>>> 10.02 you will run into the same build error.
>
>>>
>
>>> (The rest of this mail I wrote already before Konstantinos wrote to
>
>>> the
>
>>> list...)
>
>>>
>
>>> From those regex errors we can conclude that for some reason cmake
>
>>> does not manage to define the Geant4_VERSION variable. That is
>
>>> strange, because in the first line of the quoted output you show that
>
>>> it does find the installation prefix and it even quotes the version
>
>>> in parentheses. We need to collect more diagnostics, hopefully that
>
>>> will give us a clue.
>
>>>
>
>>> (1) multiple installs?
>
>>>
>
>>> Do you have other geant4 installations on your system besides the one
>
>>> you intend to use, and could you check the output of
>
>>>
>
>>> printenv | grep -i geant4
>
>>>
>
>>> to see if maybe your shell environment somehow has a mixture of
>
>>> multiple versions?
>
>>>
>
>>> (2) install method
>
>>>
>
>>> How did you install geant4? Build from source or unpack a binary tarball?
>
>>>
>
>>> (3) check cmake and geant4-config
>
>>>
>
>>> Could you cd to the *build* directory where you most recently tried
>
>>> to run cmake, and then copy-paste the following commands into you
>
>>> shell, and then copy-paste the resulting output into a mail to the list?
>
>>>
>
>>> echo $SHELL
>
>>> type cmake
>
>>> cmake --version
>
>>> grep Geant4_DIR CMakeCache.txt
>
>>> type geant4-config
>
>>> geant4-config --version
>
>>> geant4-config --prefix
>
>>>
>
>>> Maybe this helps to get a clue to what's going on on your system. If
>
>>> it doesn't then I can try to come up with some more diagnostic tests...
>
>>>
>
>>> Good luck,
>
>>> David
>
>>>
>
>>>
>
>>> Den 24/02/2017 kl. 11:40, skrev Konstantinos P. Chatzipapas, MSc:
>
>>>> Hello,
>
>>>>
>
>>>> I see that you have install Geant4 V10.3.0 and Root V6.08/02 that
>
>>>> doesn't work for GATE V7.2.
>
>>>> You must install Geant4 V10.02.p03 and Root V5.34/36, so that GATE
>
>>>> V7.2 would work.
>
>>>>
>
>>>> Kind Regards,
>
>>>> Konstantinos
>
>>>>
>
>>>> -----------------------------------------------------
>
>>>> Konstantinos Chatzipapas
>
>>>> Medical Physicist, MSc
>
>>>> University of Patras
>
>>>>
>
>>>> web page: Physics Magazine <http://www.physicsmag.com/>
>
>>>>
>
>>>>
>
>>>> Στις 7:19 π.μ. Παρασκευή, 24 Φεβρουαρίου 2017, ο/η "Salehzahi,
>
>>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
> <mailto:Farshid.Salehzahi at act.gov.au
> <mailto:Farshid.Salehzahi at act.gov.au%20%3cmailto:Farshid.Salehzahi at act.gov.au>>>
> έγραψε:
>
>>>>
>
>>>>
>
>>>> Hi Konstantinos
>
>>>>
>
>>>> Thanks for taking the time to support.
>
>>>> I can confirm that source geant4.sh is in our bashrc.
>
>>>> I can also confirm that we ran GEANT4 example, which was completed
>
>>>> smoothly indicating the GEANT4 us running trouble-free. :)
>
>>>>
>
>>>> I have copied the text below from the terminal, which shows the
>
>>>> errors we are facing for your further analysis and possible advice
> please.
>
>>>>
>
>>>> Below is the output from CMake specifying the errors encountered.
>
>>>>
>
>>>> Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/..
>
>>>> (10.3.0)
>
>>>> CMake Error at CMakeLists.txt:67 (STRING):
>
>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>
>>>> total to
>
>>>> command.
>
>>>>
>
>>>>
>
>>>> CMake Error at CMakeLists.txt:68 (STRING):
>
>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>
>>>> total to
>
>>>> command.
>
>>>>
>
>>>>
>
>>>> CMake Error at CMakeLists.txt:69 (STRING):
>
>>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
>
>>>> total to
>
>>>> command.
>
>>>>
>
>>>>
>
>>>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.
>
>>>> Please use Geant4 10.1 or 10.2 distribution instead.
>
>>>> Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08 CMake Error
>
>>>> at
>
>>>> CMakeLists.txt:173 (INCLUDE):
>
>>>> include called with wrong number of arguments. include() only
>
>>>> takes one
>
>>>> file.
>
>>>>
>
>>>>
>
>>>> CMake Error at CMakeLists.txt:175 (INCLUDE):
>
>>>> include could not find load file:
>
>>>>
>
>>>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include
>
>>>>
>
>>>> Yours Sincerely
>
>>>> Farshid
>
>>>>
>
>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>
>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>
>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>
>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>
>>>>
>
>>>> TCH Phone: 6244 4091 | Fax: 6244 2977
>
>>>> |mailto:Farshid.Salehzahi at act.gov.au
>
>>>> <mailto:Farshid.Salehzahi at act.gov.au>
>
>>>> Clinical Support Services
>
>>>> Canberra Hospital and Health Services
>
>>>>
>
>>>>
>
>>>> -----Original Message-----
>
>>>> From: Gate-users
>
>>>> [mailto:gate-users-bounces at lists.opengatecollaboration.org
>
>>>> <mailto:gate-users-bounces at lists.opengatecollaboration.org>] On
>
>>>> Behalf Of gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>>> Sent: Thursday, 23 February 2017 7:53 PM
>
>>>> To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
> <mailto:gate-users at lists.opengatecollaboration.org>
>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>>> Subject: Gate-users Digest, Vol 129, Issue 39
>
>>>>
>
>>>> Send Gate-users mailing list submissions to
>
>>>> gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
> <mailto:gate-users at lists.opengatecollaboration.org>
>
>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>
>
>>>>
>
>>>> To subscribe or unsubscribe via the World Wide Web, visit
>
>>>>
>
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>> or, via email, send a message with subject or body 'help' to
>
>>>> gate-users-request at lists.opengatecollaboration.org<mailto:gate-users-request at lists.opengatecollaboration.org>
> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>>> <mailto:gate-users-request at lists.opengatecollaboration.org>
>
>>>>
>
>>>> You can reach the person managing the list at
>
>>>> gate-users-owner at lists.opengatecollaboration.org<mailto:gate-users-owner at lists.opengatecollaboration.org>
> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>>>> <mailto:gate-users-owner at lists.opengatecollaboration.org>
>
>>>>
>
>>>> When replying, please edit your Subject line so it is more specific
>
>>>> than
>
>>>> "Re: Contents of Gate-users digest..."
>
>>>>
>
>>>>
>
>>>> Today's Topics:
>
>>>>
>
>>>> 1. Σχετ: GATE Installation Problem [SEC=UNCLASSIFIED]
>
>>>> (Konstantinos P. Chatzipapas, MSc)
>
>>>>
>
>>>>
>
>>>> --------------------------------------------------------------------
>
>>>> -
>
>>>> -
>
>>>>
>
>>>> Message: 1
>
>>>> Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)
>
>>>> From: "Konstantinos P. Chatzipapas, MSc" <konhat88 at yahoo.gr
>
>>>> <mailto:konhat88 at yahoo.gr>>
>
>>>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>
>>>> <mailto:Farshid.Salehzahi at act.gov.au>>,
>
>>>> "gate-users at lists.opengatecollaboration.org
>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>"
>
>>>> <gate-users at lists.opengatecollaboration.org
>
>>>> <mailto:gate-users at lists.opengatecollaboration.org>>
>
>>>> Subject: [Gate-users] Σχετ: GATE Installation Problem
>
>>>> [SEC=UNCLASSIFIED]
>
>>>> Message-ID: <1484310233.5675768.1487839960381 at mail.yahoo.com
>
>>>> <mailto:1484310233.5675768.1487839960381 at mail.yahoo.com>>
>
>>>> Content-Type: text/plain; charset="utf-8"
>
>>>>
>
>>>> Hello,
>
>>>> Have source your geant4.sh in your bashrc??
>
>>>> Best Regards,Konstantinos
>
>>>> ----------------------------------------------------- Konstantinos
>
>>>> Chatzipapas
>
>>>> Medical Physicist, MSc
>
>>>> University of Patras
>
>>>> web page: Physics Magazine
>
>>>>
>
>>>> Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi,
>
>>>> Farshid (Health)" <Farshid.Salehzahi at act.gov.au
>
>>>> <mailto:Farshid.Salehzahi at act.gov.au>> έγραψε:
>
>>>>
>
>>>>
>
>>>> <!--#yiv8120087482 _filtered #yiv8120087482 {font-family:"Cambria
>
>>>> Math";panose-1:2 4 5 3 5 4 6 3 2 4;} _filtered #yiv8120087482
>
>>>> {font-family:Calibri;panose-1:2 15 5 2 2 2 4 3 2 4;} _filtered
>
>>>> #yiv8120087482 {font-family:Tahoma;panose-1:2 11 6 4 3 5 4 4 2 4;}
>
>>>> _filtered #yiv8120087482 {font-family:Garamond;panose-1:2 2 4 4 3 3
>
>>>> 1
>
>>>> 1
>
>>>> 8 3;}#yiv8120087482 #yiv8120087482 p.yiv8120087482MsoNormal,
>
>>>> #yiv8120087482 li.yiv8120087482MsoNormal, #yiv8120087482
>
>>>> div.yiv8120087482MsoNormal
>
>>>> {margin:0cm;margin-bottom:.0001pt;font-size:11.0pt;font-family:"Cali
>
>>>> b
>
>>>> ri",
>
>>>> "sans-serif";}#yiv8120087482
>
>>>> a:link, #yiv8120087482 span.yiv8120087482MsoHyperlink
>
>>>> {color:blue;text-decoration:underline;}#yiv8120087482 a:visited,
>
>>>> #yiv8120087482 span.yiv8120087482MsoHyperlinkFollowed
>
>>>> {color:purple;text-decoration:underline;}#yiv8120087482
>
>>>> p.yiv8120087482MsoAcetate, #yiv8120087482
>
>>>> li.yiv8120087482MsoAcetate,
>
>>>> #yiv8120087482 div.yiv8120087482MsoAcetate
>
>>>> {margin:0cm;margin-bottom:.0001pt;font-size:8.0pt;font-family:"Tahom
>
>>>> a
>
>>>> ",
>
>>>> "sans-serif";}#yiv8120087482 span.yiv8120087482EmailStyle17
>
>>>> {font-family:"Garamond", "serif";color:windowtext;}#yiv8120087482
>
>>>> span.yiv8120087482BalloonTextChar {font-family:"Tahoma",
>
>>>> "sans-serif";}#yiv8120087482 .yiv8120087482MsoChpDefault {}
>
>>>> _filtered
>
>>>> #yiv8120087482 {margin:72.0pt 72.0pt 72.0pt 72.0pt;}#yiv8120087482
>
>>>> div.yiv8120087482WordSection1 {}-->Hello GATE-Users, One of my
>
>>>> colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on
>
>>>> an Ubuntu server. The Geant4 built successfully. The problem is that
>
>>>> the GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE
>
>>>> parameter. The Geant4_USE_FILE is not set correctly and he would like to
>
>>>> know what file/variable etc this is trying to point to? I would
>
>>>> really appreciate your prompt response to this matter as we are looking
>
>>>> forward to using GATE’s applications. Yours Sincerely, Farshid
>
>>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of
>
>>>> Molecular and Nuclear Medicine Physics Section Medical Physics and
>
>>>> Radiation Engineering ANU Visiting Fellow Research School of Physics
>
>>>> and Engineering, ANU College of Physical and Mathematical Sciences
>
>>>> TCH
>
>>>> Phone: 6244 4091 | Fax: 6244 2977
>
>>>> |mailto:Farshid.Salehzahi at act.gov.au
>
>>>> <mailto:Farshid.Salehzahi at act.gov.au> Clinical Support Services
>
>>>> Canberra Hospital and Health Services We acknowledge the
>
>>>> traditional custodians of the ACT, the Ngunnawal people. We
>
>>>> acknowledge and respect their continuing culture and the
>
>>>> contribution they make to the life of this city and this region.
>
>>>>
>
>>>> --------------------------------------------------------------------
>
>>>> -
>
>>>> -- This email, and any attachments, may be confidential and also
>
>>>> privileged. If you are not the intended recipient, please notify the
>
>>>> sender and delete all copies of this transmission along with any
>
>>>> attachments immediately. You should not copy or use it for any
>
>>>> purpose, nor disclose its contents to any other person.
>
>>>> --------------------------------------------------------------------
>
>>>> -
>
>>>> -- _______________________________________________
>
>>>> Gate-users mailing list
>
>>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>>
>
>>>>
>
>>>> -------------- next part -------------- An HTML attachment was
>
>>>> scrubbed...
>
>>>> URL:
>
>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>
>>>> t tachments/20170223/4ed4fbbd/attachment.html>
>
>>>>
>
>>>> -------------- next part -------------- A non-text attachment was
>
>>>> scrubbed...
>
>>>> Name: image001.jpg
>
>>>> Type: image/jpeg
>
>>>> Size: 4912 bytes
>
>>>> Desc: not available
>
>>>> URL:
>
>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>
>>>> t tachments/20170223/4ed4fbbd/attachment.jpg>
>
>>>>
>
>>>> -------------- next part -------------- A non-text attachment was
>
>>>> scrubbed...
>
>>>> Name: image002.png
>
>>>> Type: image/png
>
>>>> Size: 2353 bytes
>
>>>> Desc: not available
>
>>>> URL:
>
>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>
>>>> t tachments/20170223/4ed4fbbd/attachment.png>
>
>>>>
>
>>>> -------------- next part -------------- A non-text attachment was
>
>>>> scrubbed...
>
>>>> Name: image003.png
>
>>>> Type: image/png
>
>>>> Size: 2784 bytes
>
>>>> Desc: not available
>
>>>> URL:
>
>>>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/a
>
>>>> t tachments/20170223/4ed4fbbd/attachment-0001.png>
>
>>>>
>
>>>>
>
>>>> ------------------------------
>
>>>>
>
>>>> Subject: Digest Footer
>
>>>>
>
>>>> _______________________________________________
>
>>>> Gate-users mailing list
>
>>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>>
>
>>>> ------------------------------
>
>>>>
>
>>>> End of Gate-users Digest, Vol 129, Issue 39
>
>>>> *******************************************
>
>>>>
>
>>>>
>
>>>>
>
>>>>
>
>>>> _______________________________________________
>
>>>> Gate-users mailing list
>
>>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>>>
>
>>> _______________________________________________
>
>>> Gate-users mailing list
>
>>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>
>
>>
>
>> ------------------------------
>
>>
>
>> Subject: Digest Footer
>
>>
>
>> _______________________________________________
>
>> Gate-users mailing list
>
>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>
>
>> ------------------------------
>
>>
>
>> End of Gate-users Digest, Vol 129, Issue 41
>
>> *******************************************
>
>>
>
>> ----------------------------------------------------------------------
>
>> - This email, and any attachments, may be confidential and also
>
>> privileged. If you are not the intended recipient, please notify the
>
>> sender and delete all copies of this transmission along with any
>
>> attachments immediately. You should not copy or use it for any
>
>> purpose, nor disclose its contents to any other person.
>
>> ----------------------------------------------------------------------
>
>> -
>
>>
>
>>
>
>> _______________________________________________
>
>> Gate-users mailing list
>
>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
> <mailto:Gate-users at lists.opengatecollaboration.org>
>
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>>
>
> -----------------------------------------------------------------------
> This email, and any attachments, may be confidential and also
> privileged. If you are not the intended recipient, please notify the
> sender and delete all copies of this transmission along with any
> attachments immediately. You should not copy or use it for any purpose,
> nor disclose its contents to any other person.
> -----------------------------------------------------------------------
>
------------------------------
Subject: Digest Footer
_______________________________________________
Gate-users mailing list
Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
------------------------------
End of Gate-users Digest, Vol 130, Issue 5
******************************************
-----------------------------------------------------------------------
This email, and any attachments, may be confidential and also privileged. If you are not the intended recipient, please notify the sender and delete all copies of this transmission along with any attachments immediately. You should not copy or use it for any purpose, nor disclose its contents to any other person.
-----------------------------------------------------------------------
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20170308/e8937dbb/attachment-0001.html>
More information about the Gate-users
mailing list