[Gate-users] Gate-users Digest, Vol 129, Issue 39 [SEC=UNCLASSIFIED]

Fri Feb 24 06:19:37 CET 2017

Hi Konstantinos

Thanks for taking the time to support.  
I can confirm that source geant4.sh is in our bashrc.
I can also confirm that we ran GEANT4 example, which was completed smoothly indicating the GEANT4 us running trouble-free. :)

I have copied the text below from the terminal, which shows the errors we are facing for your further analysis and possible advice please.

Below is the output from CMake specifying the errors encountered.

Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/.. (10.3.0)
CMake Error at CMakeLists.txt:67 (STRING):
  string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
  command.

CMake Error at CMakeLists.txt:68 (STRING):
  string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
  command.

CMake Error at CMakeLists.txt:69 (STRING):
  string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
  command.

Warning! GATE version 7.2 is not validated for Geant4 . distribution. Please use Geant4 10.1 or 10.2 distribution instead.
Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08
CMake Error at CMakeLists.txt:173 (INCLUDE):
  include called with wrong number of arguments.  include() only takes one
  file.

CMake Error at CMakeLists.txt:175 (INCLUDE):
  include could not find load file:

    /home/cneeley/apps/GATE/gate_v7.2/source/general/include

Yours Sincerely
Farshid

Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) 
Head of Molecular and Nuclear Medicine Physics Section
Medical Physics and Radiation Engineering 
ANU Visiting Fellow
Research School of Physics and Engineering, 
ANU College of Physical and Mathematical Sciences

TCH Phone: 6244 4091 | Fax: 6244 2977 |mailto:Farshid.Salehzahi at act.gov.au
Clinical Support Services
Canberra Hospital and Health Services 

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Today's Topics:

   1. Σχετ:  GATE Installation Problem [SEC=UNCLASSIFIED]
      (Konstantinos P. Chatzipapas, MSc)

----------------------------------------------------------------------

Message: 1
Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)
From: "Konstantinos P. Chatzipapas, MSc" <konhat88 at yahoo.gr>
To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au>,
	"gate-users at lists.opengatecollaboration.org"
	<gate-users at lists.opengatecollaboration.org>
Subject: [Gate-users] Σχετ:  GATE Installation Problem
	[SEC=UNCLASSIFIED]
Message-ID: <1484310233.5675768.1487839960381 at mail.yahoo.com>
Content-Type: text/plain; charset="utf-8"

Hello,
Have source your geant4.sh in your bashrc??
Best Regards,Konstantinos
 ----------------------------------------------------- Konstantinos Chatzipapas
    Medical Physicist, MSc
       University of Patras
    web page: Physics Magazine 

    Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi, Farshid (Health)" <Farshid.Salehzahi at act.gov.au> έγραψε:

  <!--#yiv8120087482 _filtered #yiv8120087482 {font-family:"Cambria Math";panose-1:2 4 5 3 5 4 6 3 2 4;} _filtered #yiv8120087482 {font-family:Calibri;panose-1:2 15 5 2 2 2 4 3 2 4;} _filtered #yiv8120087482 {font-family:Tahoma;panose-1:2 11 6 4 3 5 4 4 2 4;} _filtered #yiv8120087482 {font-family:Garamond;panose-1:2 2 4 4 3 3 1 1 8 3;}#yiv8120087482 #yiv8120087482 p.yiv8120087482MsoNormal, #yiv8120087482 li.yiv8120087482MsoNormal, #yiv8120087482 div.yiv8120087482MsoNormal {margin:0cm;margin-bottom:.0001pt;font-size:11.0pt;font-family:"Calibri", "sans-serif";}#yiv8120087482 a:link, #yiv8120087482 span.yiv8120087482MsoHyperlink {color:blue;text-decoration:underline;}#yiv8120087482 a:visited, #yiv8120087482 span.yiv8120087482MsoHyperlinkFollowed {color:purple;text-decoration:underline;}#yiv8120087482 p.yiv8120087482MsoAcetate, #yiv8120087482 li.yiv8120087482MsoAcetate, #yiv8120087482 div.yiv8120087482MsoAcetate {margin:0cm;margin-bottom:.0001pt;font-size:8.0pt;font-family:"Tahoma", "sans-serif";}#yiv8120087482 span.yiv8120087482EmailStyle17 {font-family:"Garamond", "serif";color:windowtext;}#yiv8120087482 span.yiv8120087482BalloonTextChar {font-family:"Tahoma", "sans-serif";}#yiv8120087482 .yiv8120087482MsoChpDefault {} _filtered #yiv8120087482 {margin:72.0pt 72.0pt 72.0pt 72.0pt;}#yiv8120087482 div.yiv8120087482WordSection1 {}-->Hello GATE-Users,    One of my colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on an Ubuntu server. The Geant4 built successfully. The problem is that the GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE parameter. The Geant4_USE_FILE is not set correctly and he would like to know what file/variable etc this is trying to point to?    I would really appreciate your prompt response to this matter as we are looking forward to using GATE’s applications.       Yours Sincerely, Farshid     Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM)
Head of Molecular and Nuclear Medicine Physics Section Medical Physics and Radiation Engineering ANU Visiting Fellow Research School of Physics and Engineering, ANU College of Physical and Mathematical Sciences TCH Phone: 6244 4091 | Fax: 6244 2977 |mailto:Farshid.Salehzahi at act.gov.au Clinical Support Services Canberra Hospital and Health Services  We acknowledge the traditional custodians of the ACT, the Ngunnawal people. We acknowledge and respect their continuing culture and the contribution they make to the life of this city and this region.
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