[Gate-users] Gate-users Digest, Vol 129, Issue 7

Fri Feb 3 16:19:09 CET 2017

Hi Alessandro,

     After typing all commands on Idle prompt just type

/gate/geometry/rebuild

I am also newbie. 😂

On Fri, Feb 3, 2017 at 6:05 PM, <
gate-users-request at lists.opengatecollaboration.org> wrote:

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> Today's Topics:
>
>    1. Problems with visualization (Alessandro Bellini)
>    2. Re: Problems with visualization (Pietrzyk, Uwe)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 3 Feb 2017 12:48:01 +0100
> From: Alessandro Bellini <ale.notc at gmail.com>
> To: gate-users at lists.opengatecollaboration.org
> Subject: [Gate-users] Problems with visualization
> Message-ID:
>         <CAJZjDCBDjS1kBVtL7JVQ=VG9LxD3RWZccPNGcYDA2-Z1WTrhdw at mail.
> gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear GATE users,
>
> I've just installe GATE v7.2 on Mac OSX 10.11 and I'm trying the very first
> step using Gate User's Guide, and I have problems after very few lines
>
> # TEST GATE MANUAL
>
> # V I S U A L I Z A T I O N
> /vis/open OGLSX
> /vis/viewer/reset
> /vis/viewer/set/viewpointThetaPhi 60 60
> /vis/viewer/zoom 1
> /vis/viewer/set/style surface
> /vis/drawVolume
> /tracking/storeTrajectory 1
> /vis/scene/endOfEventAction accumulate 10
> /vis/viewer/update
>
> # G E O M E T R Y
> /gate/geometry/setMaterialDatabase GateMaterials.db
>
> # W O R L D
> /gate/world/geometry/setXLength 40. cm
> /gate/world/geometry/setYLength 40. cm
> /gate/world/geometry/setZLength 40. cm
>
> # S Y S T E M
> /gate/world/daughters/name cylindricalPET
> /gate/world/daughters/insert cylinder
> /gate/cylindricalPET/setMaterial Water
> /gate/cylindricalPET/geometry/setRmax 100 mm
> /gate/cylindricalPET/geometry/setRmin 86 mm
> /gate/cylindricalPET/geometry/setHeight 18 mm
> #/gate/cylindricalPET/vis/setColor red
> /gate/cylindricalPET/vis/setVisible 1
> /gate/cylindricalPET/vis/forceWireframe
> /vis/viewer/zoom 3
>
> I do not see the cylinder in the viewer, I only see the zoomed world.
> Sorry for the very newbie question
>
> Thanks a lot
>
> Alessandro
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> ------------------------------
>
> Message: 2
> Date: Fri, 3 Feb 2017 12:34:46 +0000
> From: "Pietrzyk, Uwe" <u.pietrzyk at fz-juelich.de>
> To: Alessandro Bellini <ale.notc at gmail.com>
> Cc: "gate-users at lists.opengatecollaboration.org"
>         <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] Problems with visualization
> Message-ID: <C8099F13-13D6-4807-B4B0-907EC1D911FB at fz-juelich.de>
> Content-Type: text/plain; charset="iso-8859-1"
>
>
> Hi Alesandro,
>
> there were some commands missing. Please see the test.mac file in the
> attachment.
> Maybe it would be a good idea to use one of the examples which come with
> the GATE
> distribution or also the EduGATE examples, were you can learn , how to
> arrange
> a simulation.
>
> Kind regards, and best wishes,
>
> Uwe Pietrzyk
>
>
>
>
> /----------------------------------------------------------------------
> Prof. Dr. Uwe Pietrzyk
> Diplom-Physiker
> Institut für Neurowissenschaften und Medizin / INM-4
> Forschungszentrum Jülich GmbH
> 52425 Jülich
> Tel: +49-2461-61 4763
> Fax: +49-2461-61 2820
> Mobil: +49-162-103-4871
> eMail: U.Pietrzyk at fz-juelich.de
> http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html
> &
> Bergische Universität Wuppertal
> Fakultät für Mathematik und Naturwissenschaften
> Büro:  D.08.01
> Gaußstr. 20
> 42097 Wuppertal
> Tel: +49-(0)202-439-3523
> Fax: +49-(0)202-439-2811
> eMail: Uwe.Pietrzyk at uni-wuppertal.de
> http://www.medizinphysik.uni-wuppertal.de
> ----------------------------------------------------------------------/
>
> On 03 Feb 2017, at 12:48, Alessandro Bellini <ale.notc at gmail.com> wrote:
>
> > Dear GATE users,
> >
> > I've just installe GATE v7.2 on Mac OSX 10.11 and I'm trying the very
> first step using Gate User's Guide, and I have problems after very few lines
> >
> > #     TEST GATE MANUAL
> >
> > # V I S U A L I Z A T I O N
> > /vis/open OGLSX
> > /vis/viewer/reset
> > /vis/viewer/set/viewpointThetaPhi 60 60
> > /vis/viewer/zoom 1
> > /vis/viewer/set/style surface
> > /vis/drawVolume
> > /tracking/storeTrajectory 1
> > /vis/scene/endOfEventAction accumulate 10
> > /vis/viewer/update
> >
> > # G E O M E T R Y
> > /gate/geometry/setMaterialDatabase GateMaterials.db
> >
> > # W O R L D
> > /gate/world/geometry/setXLength 40. cm
> > /gate/world/geometry/setYLength 40. cm
> > /gate/world/geometry/setZLength 40. cm
> >
> > # S Y S T E M
> > /gate/world/daughters/name cylindricalPET
> > /gate/world/daughters/insert cylinder
> > /gate/cylindricalPET/setMaterial Water
> > /gate/cylindricalPET/geometry/setRmax 100 mm
> > /gate/cylindricalPET/geometry/setRmin 86 mm
> > /gate/cylindricalPET/geometry/setHeight 18 mm
> > #/gate/cylindricalPET/vis/setColor red
> > /gate/cylindricalPET/vis/setVisible 1
> > /gate/cylindricalPET/vis/forceWireframe
> > /vis/viewer/zoom 3
> >
> > I do not see the cylinder in the viewer, I only see the zoomed world.
> > Sorry for the very newbie question
> >
> > Thanks a lot
> >
> > Alessandro
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
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