[Gate-users] Issue with installing gate_v7.2

Ezzat Elmo ezzat.elmo at gmail.com
Thu Dec 22 11:30:59 CET 2016 

Hi David,

You were right twice, first, the issue was with root, it was a binary for a
different Linux version, using the one in the link you send me worked. the
second thing is as you said, after installing the new root i had to build
gate from scratch,
and now it running perfectly! thanks again for your help and thanks for
this great community.

Ezzat


> Date: Tue, 20 Dec 2016 14:21:30 +0100
> From: David Boersma <david.boersma at physics.uu.se>
> To: <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] Issue with installing gate_v7.2
> Message-ID: <3bba1ba9-5d80-0ae2-f7bf-452f147c3f6f at physics.uu.se>
> Content-Type: text/plain; charset="utf-8"; format=flowed
>
> Hi Ezzat,
>
> ROOT is tricky, and often I am tempted to make it possible to build GATE
> without ROOT. But for the time being you do need it, and it needs to be
> installed properly.
>
> The errors that you get now are very similar to those reported yesterday
> by Elnur Sadihov. I suggested Elnur to install the "libssl-dev" package,
> but he did not yet report back about whether that was helpful or not. On
> my own Ubunut 14.04 system I actually see libssl.so.1.0.0 instead of the
> libssl.so.10 mentioned in your error logs, so I'm not sure. It kind of
> looks like maybe you installed a binary tarball for ROOT that was
> intended for a different linux distribution. Which brings us back to an
> earlier question: how *did* you install ROOT? If you downloaded a binary
> package then you need to be very careful with choosing the right
> version. For Ubuntu 14.04 the binary tarball is:
>
> https://root.cern.ch/download/root_v5.34.36.Linux-ubuntu14-
> x86_64-gcc4.8.tar.gz
>
> But usually I myself prefer compiling ROOT from source. It takes a
> while, but then you're sure it's really compatible with your system and
> that you have all required libraries.
>
> David
>
> Den 20/12/2016 kl. 12:45, skrev Ezzat Elmo:
> > Hi David,
> > what I did to solve the issue I'm not proud of but it seemed to work at
> > first but not sure anymore. what i did was I already have the vgate_V7.2
> > so i went there and took the TVector2.h file and added it in my pc. now
> > im thinking about it, it might be the reason why its still not working.
> >
> > so now i started the build from scratch but got a new list of errors:
> >
> > #####
> > [  2%] Built target itkzlib
> > [  6%] Built target MetaIO
> > [  6%] Linking CXX executable Gate
> > /usr/bin/ld: warning: libssl.so.10, needed by
> > /home/gate/Downloads/root_v5.34/lib/libNet.so, not found (try using
> > -rpath or -rpath-link)
> > /usr/bin/ld: warning: libcrypto.so.10, needed by
> > /home/gate/Downloads/root_v5.34/lib/libNet.so, not found (try using
> > -rpath or -rpath-link)
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_CTX_use_PrivateKey_file at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_set_fd at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_library_init at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_CTX_use_certificate_chain_file at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_connect at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_new at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_free at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_shutdown at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `HMAC at libcrypto.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_peek at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_write at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_CTX_new at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSLv23_method at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_set_quiet_shutdown at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `EVP_sha1 at libcrypto.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_CTX_free at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_CTX_load_verify_locations at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_read at libssl.so.10'
> > /home/gate/Downloads/root_v5.34/lib/libNet.so: undefined reference to
> > `SSL_get_error at libssl.so.10'
> > collect2: error: ld returned 1 exit status
> > make[2]: *** [Gate] Error 1
> > make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> > make: *** [all] Error 2
> >
> >
> > #####
> >
> >
> >     Message: 2
> >     Date: Tue, 20 Dec 2016 10:28:57 +0100
> >     From: David Boersma <david.boersma at physics.uu.se
> >     <mailto:david.boersma at physics.uu.se>>
> >     To: <gate-users at lists.opengatecollaboration.org
> >     <mailto:gate-users at lists.opengatecollaboration.org>>
> >     Subject: Re: [Gate-users] Issue with installing gate_v7.2
> >     Message-ID: <90b22600-ff8a-eed2-64c6-0324f3563caf at physics.uu.se
> >     <mailto:90b22600-ff8a-eed2-64c6-0324f3563caf at physics.uu.se>>
> >     Content-Type: text/plain; charset="utf-8"; format=flowed
> >
> >     Hi Ezzat,
> >
> >     Good to see that you solved that particular issue.
> >     Could you share with the mailing list how you solved it?
> >
> >     (Whenever you run into such a problem then there are usually more
> people
> >     just like you who run into the exact same problem, who are silently
> very
> >     grateful to you that you are bringing it up here on the mailing
> list. So
> >     it is almost always important to also describe the solution, if you
> got
> >     any! Don't keep us in suspense... And if we would finally get our
> e-mail
> >     archive back online, searchable with Google, then those users would
> even
> >     find your e-mail thread quite easily.)
> >
> >     After you fixed the TVector2.h issue, did you start the build
> completely
> >     from scratch? I strongly suspect that in this case that is necessary.
> >     Make a new empty build directory and start with running ccmake in
> that
> >     directory.
> >
> >     Good luck,
> >     David
> >
> >
> >     Den 18/12/2016 kl. 09:16, skrev Ezzat Elmo:
> >     > Good day everyone
> >     >
> >     > I was able to solve the previous issue wit the TVector2.h , thanks
> >     David
> >     >
> >     > but now I'm facing a new one and cant seem to be able to figure it
> >     out,
> >     > again
> >     > Gate_v7.2 on Ubuntu 14.04
> >     > root 5.34
> >     >
> >     >
> >     > Thanks in advance for your help,
> >     > Ezzat
> >     > ###
> >     >
> >     > [100%] Linking CXX executable Gate
> >     > /usr/bin/ld: cannot find -lGraf3d
> >     > /usr/bin/ld: cannot find -lPostscript
> >     > /usr/bin/ld: cannot find -lPhysics
> >     > collect2: error: ld returned 1 exit status
> >     > make[2]: *** [Gate] Error 1
> >     > make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> >     > make: *** [all] Error 2
> >     >
> >     > ####
> >
> >
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >
>
>
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