[Gate-users] Problems with installing Gate_v7.1
Elnur Sadihov
forward1292 at gmail.com
Mon Dec 19 13:40:59 CET 2016
I don't understand what happened after the command 'unset PATH', but I just
closed terminal and opened it again - basic commands work again.
Below there are additional lines with 'export' and 'source', which are
written in my .bashrc:
export PATH=$PATH:/usr/local/MATLAB/R2014b/bin/glnxa64
export LD_PRELOAD='/usr/$LIB/libstdc++.so.6'
export DISPLAY=:0
export PATH=$PATH:/home/elnur/Programs/2.2.0.4-install/bin
export PATH=$PATH:/home/elnur/Programs/2.2.0.4-install/include
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/elnur/Programs/2.2.
0.4-install/lib
source /home/elnur/Programs/root_v5.34/bin/thisroot.sh
source /home/elnur/Programs/geant4.10.01.p03-install/bin/geant4.sh
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/elnur/Programs/lmf_
v3.0/lib/Linux-g++
#export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu
I run 'printenv | grep -i matlab':
elnur at elnur-System-Product-Name:~$ printenv | grep -i matlab
PATH=/home/elnur/Programs/geant4.10.01.p03-install/bin:/
home/elnur/Programs/root_v5.34/bin:/usr/local/sbin:/usr/
local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/
local/games:/home/elnur/Programs/2.2.0.4-install/bin:/
home/elnur/Programs/2.2.0.4-install/include:/usr/local/
MATLAB/R2014b/bin/glnxa64
Now I commented the line 'export
PATH=$PATH:/usr/local/MATLAB/R2014b/bin/glnxa64'
in .bashrc.
After reopening terminal the command 'printenv | grep -i matlab' doesn't
give anything, as it has to be.
I run 'ccmake ../gate_v7.1' and this time I turned off options 'Download
benchmarks data' and 'Download examples data'. Then I run 'make -j4' and
again got the same error. Below there is a log:
----------------------------------------------------------------------------------------------------------------------------------
elnur at elnur-System-Product-Name:~/Programs/gate_v7.1-build$ make -j4
Scanning dependencies of target itkzlib
Scanning dependencies of target MetaIO
[ 0%] [ 0%] [ 0%] Building C object
itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/adler32.o
Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/compress.o
Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/crc32.o
[ 0%] Building CXX object itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaUtils.o
[ 0%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/deflate.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/gzio.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inffast.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inflate.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inftrees.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/trees.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/uncompr.o
[ 2%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/zutil.o
[ 2%] Building CXX object itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaArrow.o
[ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaBlob.o
Linking C static library libitkzlib.a
[ 3%] Built target itkzlib
[ 3%] Building CXX object
itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaCommand.o
[ 3%] Building CXX object
itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaContour.o
[ 3%] Building CXX object
itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaDTITube.o
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itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaEllipse.o
[ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaGroup.o
[ 3%] Building CXX object
itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaGaussian.o
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itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaImageUtils.o
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itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaLandmark.o
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[ 6%] Building CXX object
itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaFEMObject.o
Linking CXX static library libMetaIO.a
[ 6%] Built target MetaIO
Scanning dependencies of target Gate
[ 6%] [ 6%] [ 6%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o
[ 6%] Building CXX object
CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o
Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o
Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o
[ 6%] Building CXX object
CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o
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CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o
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CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o
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CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateElTubMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageBox.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateCylindricalPETSystem.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateGeneralTrpd.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateVoxelBoxParam.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTetra.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularParametrisedVolumeMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateVoxelOutputMessenger.cc.o
Building CXX object
CMakeFiles/Gate.dir/source/geometry/src/GateVolumeManager.cc.o
[ 8%] Building CXX object
CMakeFiles/Gate.dir/source/geometry/src/GateVoxelCompressor.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisation.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTwistedBoxMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateDMapreadlongvol.cc.o
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Building CXX object
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CMakeFiles/Gate.dir/source/geometry/src/GateWedgeMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularParametrisedVolume.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateDMapdt_core.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateGenericMove.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateQuadrantRepeaterMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParameterization.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GatePETScannerSystem.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTwistedTubsMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelInterfileReaderMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateSPECTHeadSystem.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelOutput.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTwistedTrdMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateRegularParameterizedMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateBoxReplica.cc.o
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Linking CXX executable Gate
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_free at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_use_certificate_chain_file at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_get_error at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_use_PrivateKey_file at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`EVP_sha1 at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_read at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_set_quiet_shutdown at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSLv23_method at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_new at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_peek at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_new at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`HMAC at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_write at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_load_verify_locations at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_free at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_set_fd at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_connect at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_library_init at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_shutdown at OPENSSL_1.0.0'
collect2: error: ld returned 1 exit status
make[2]: *** [Gate] Error 1
make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
make: *** [all] Error 2
------------------------------------------------------------------------------------------------------------------------------------------------
Best regards,
Elnur
2016-12-19 13:40 GMT+03:00 David Boersma <david.boersma at physics.uu.se>:
> Hi Elnur,
>
> Just for my curiosity, why do you prefer the 7.1 release over the latest
> 7.2 release?
>
> Thanks for explicitly listing all relevant versions and a full build log!
> I have some random hints and remarks that may hopefully be some first steps
> in solving your problem.
>
> * cmake/ccmake versions are different, that is weird. The ccmake program
> is just an interactive UI wrapper around cmake and it should report the
> same version. If not, then something may be wrong funny with your shell
> environment, in particular the PATH variable. How did you determine these
> versions? Is that the package version number, or the output of "cmake
> --version" and "ccmake --version"? The latter is the most important.
>
> * The cmake warnings mention MATLAB directories. You do not need MATLAB
> for building GATE, so I think you can silence these warnings by removing
> /usr/local/MATLAB/R2014b/bin from your PATH and maybe other variables. If
> you are on a system where you manage your shell environment with the
> "module" command, then something like "module remove matlab" should help.
> Otherwise run something like "printenv | grep -i matlab" to check which
> shell variables need adjustment ("export VARNAME=NEWVALUE" or "unset
> VARNAME").
>
> * As far as I can see, "make -j4" step results in two fatal errors (out of
> a possible four!), one regarding a download failure and one about SSL
> linking problems with a ROOT shared library. The first one may be solved by
> running make one more time, or by downloading the problematic test file by
> hand. The second one seems to indicate that something might be wrong with
> your ROOT installation. It is also possible that the MATLAB things in your
> environment are interfering destructively with the ROOT linking, so try
> that first.
>
> Hope that helps a bit,
> David Boersma
>
>
> Den 19/12/2016 kl. 09:00, skrev Elnur Sadihov:
>
>> Hello everyone,
>>
>> I'm trying to install Gate_v7.1 on Ubuntu 14.04 LTS.
>> Installed packages:
>> cmake 3.6.1
>> ccmake 2.8.12.2
>> CLHEP 2.2.0.4
>> root 5.34
>> geant4.10.01.p03
>>
>>
>> I follow compilation instructions
>> http://wiki.opengatecollaboration.org/index.php/Compilation_
>> Instructions_V7.1
>>
>> After configuring Gate_v.7.1 I press 'g' to generate the compilation
>> environment. But Warning appears:
>>
>> CMake Warning at CMakeLists.txt:195 (ADD_EXECUTABLE):
>> Cannot generate a safe runtime search path for target Gate because
>> files in
>> some directories may conflict with libraries in implicit directories:
>>
>> runtime library [libQtOpenGL.so.4] in /usr/lib/x86_64-linux-gnu may
>> be
>> hidden by files in:
>> /usr/local/MATLAB/R2014b/bin/glnxa64
>> runtime library [libQtGui.so.4] in /usr/lib/x86_64-linux-gnu may be
>> hidden by files in:
>> /usr/local/MATLAB/R2014b/bin/glnxa64
>> runtime library [libQtCore.so.4] in /usr/lib/x86_64-linux-gnu may be
>> hidden by files in:
>> /usr/local/MATLAB/R2014b/bin/glnxa64
>>
>> Some of these libraries may not be found correctly.
>>
>> Then I run command 'make -j4' and it finally gives the error. Below
>> there is a log:
>>
>> Scanning dependencies of target itkzlib
>> Scanning dependencies of target GateBenchmarkData
>> Scanning dependencies of target GateExampleData
>> Scanning dependencies of target MetaIO
>> [ 0%] Generating
>> /home/elnur/Programs/gate_v7.1/benchmarks/benchPET/benchPET.pdf
>> [ 0%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/TAC_Example.png
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=0a63785ee8d79c3031523f20c0b7c4cc&algorithm=MD5"
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=35a91d8d91d208cf300cfe02c41f0899&algorithm=MD5"
>> [ 0%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/adler32.o
>> [ 1%] Building CXX object itk-mhd/MetaIO/CMakeFiles/Meta
>> IO.dir/metaUtils.o
>> [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itk
>> zlib.dir/compress.o
>> [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/crc32.o
>> -- [download 100% complete]
>> -- [download 100% complete]
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>> -- [download 0% complete]
>> -- [download 52% complete]
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>> -- [download 100% complete]
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/35a91d8d91d208cf300cfe02c41f0899"
>> [ 2%] Generating
>> /home/elnur/Programs/gate_v7.1/benchmarks/benchPET/benchmark
>> PET-GATE-Reference.gif
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=d84562b93ae060451f5b5554f7dda606&algorithm=MD5"
>> [ 2%] -- [download 100% complete]
>> Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inffast.o
>> -- Downloaded object:
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>> D5/0a63785ee8d79c3031523f20c0b7c4cc"
>> [ 2%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_act_1.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=730355e81d3c478e92b09f3764f126c4&algorithm=MD5"
>> [ 2%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inflate.o
>> [ 2%] -- [download 100% complete]
>> Building CXX object itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaArrow.o
>> -- [download 100% complete]
>> [ 2%] [ 2%] Building CXX object
>> itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaBlob.o
>> Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inftrees.o
>> [ 2%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/trees.o
>> -- [download 0% complete]
>> [ 2%] Building CXX object
>> itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaCommand.o
>> -- [download 0% complete]
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>> [ 3%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/zutil.o
>> -- [download 60% complete]
>> -- [download 100% complete]
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/d84562b93ae060451f5b5554f7dda606"
>> Linking C static library libitkzlib.a
>> [ 3%] Generating
>> /home/elnur/Programs/gate_v7.1/benchmarks/benchPET/benchmarkPET-fGATE.gif
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=4844097d2a516347c6a4f39ece654125&algorithm=MD5"
>> [ 3%] Built target itkzlib
>> [ 3%] Generating
>> /home/elnur/Programs/gate_v7.1/benchmarks/benchPET/benchmarkPET.gif
>> -- Fetching
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>> [ 3%] Generating
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>> eference-results.gif
>> -- Fetching
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>> [ 3%] Building CXX object
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>> Curve/data/NCAT_act_10.bin
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>> -- Downloaded object:
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>> [ 4%] Generating
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>> SPECTfgate.gif
>> -- Fetching
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>> [ 5%] Generating
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>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
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>> [ 5%] Built target GateBenchmarkData
>> [ 5%] Generating
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>> -- Fetching
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>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/4373ca3fd7b365b6a327b4f443abac50"
>> [ 7%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_act_4.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=6e1dd112c3ff48913d55e5754ccb0510&algorithm=MD5"
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>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/ef43ddc95ae120b5d05eb09cb9371e2a"
>> [ 7%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_act_5.bin
>> -- [download 75% complete]
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=d746dd3bf5942a29c470aefff9280236&algorithm=MD5"
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>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/6e1dd112c3ff48913d55e5754ccb0510"
>> [ 8%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_act_6.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=d5a777f0731cae74ec51e94eff676385&algorithm=MD5"
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>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/730355e81d3c478e92b09f3764f126c4"
>> [ 8%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_act_7.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=af5b5dbef7a9aa37d1b554d2fab7bdd0&algorithm=MD5"
>> -- [download 44% complete]
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>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/494a61c7968269d98f8ccf35bfb0dfdd"
>> Scanning dependencies of target Gate
>> -- [download 8% complete]
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>> [ 8%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o
>> -- [download 64% complete]
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>> [ 8%] Building CXX object
>> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o
>> -- [download 18% complete]
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>> [ 8%] Building CXX object
>> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o
>> -- [download 22% complete]
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>> -- [download 60% complete]
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>> [ 8%] Building CXX object CMakeFiles/Gate.dir/source/arf
>> /src/GateARFSD.cc.o
>> -- [download 24% complete]
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>> [ 8%] Building CXX object
>> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o
>> -- [download 28% complete]
>> [ 8%] Building CXX object
>> CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o
>> -- [download 29% complete]
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>> [ 8%] Building CXX object
>> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o
>> -- [download 32% complete]
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>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o
>> -- [download 76% complete]
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>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateElTubMessenger.cc.o
>> -- [download 36% complete]
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>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageBox.cc.o
>> -- [download 79% complete]
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>> -- [download 69% complete]
>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCylindricalPETSystem.cc.o
>> -- [download 80% complete]
>> -- [download 70% complete]
>> -- [download 39% complete]
>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeneralTrpd.cc.o
>> -- [download 81% complete]
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>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVoxelBoxParam.cc.o
>> -- [download 40% complete]
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>> -- [download 72% complete]
>> -- [download 41% complete]
>> [ 9%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTetra.cc.o
>> -- [download 73% complete]
>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularPara
>> metrisedVolumeMessenger.cc.o
>> -- [download 83% complete]
>> -- [download 42% complete]
>> -- [download 43% complete]
>> -- [download 84% complete]
>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVoxelOutputMessenger.cc.o
>> -- [download 74% complete]
>> -- [download 85% complete]
>> -- [download 44% complete]
>> -- [download 75% complete]
>> -- [download 86% complete]
>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVolumeManager.cc.o
>> -- [download 45% complete]
>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVoxelCompressor.cc.o
>> -- [download 87% complete]
>> -- [download 46% complete]
>> -- [download 76% complete]
>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParam
>> etrisation.cc.o
>> -- [download 88% complete]
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>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTwistedBoxMessenger.cc.o
>> -- [download 91% complete]
>> -- [download 80% complete]
>> [ 10%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateDMapreadlongvol.cc.o
>> -- [download 92% complete]
>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateQuadrantRepeater.cc.o
>> -- [download 49% complete]
>> -- [download 81% complete]
>> -- [download 93% complete]
>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCylinderComponent.cc.o
>> -- [download 82% complete]
>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateWedgeComponent.cc.o
>> -- [download 94% complete]
>> -- [download 83% complete]
>> -- [download 50% complete]
>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateSurfaceMessenger.cc.o
>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTab
>> ulatedTranslator.cc.o
>> -- [download 95% complete]
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>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTrpdMessenger.cc.o
>> -- [download 97% complete]
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>> [ 11%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateEllipsoMessenger.cc.o
>> -- [download 89% complete]
>> -- [download 53% complete]
>> [ 12%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalize
>> dSubVolumeSolid.cc.o
>> -- [download 99% complete]
>> -- [download 90% complete]
>> -- [download 54% complete]
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>> -- [download 91% complete]
>> [ 12%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelP
>> arameterized.cc.o
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/d746dd3bf5942a29c470aefff9280236"
>> [ 12%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_act_8.bin
>> -- [download 55% complete]
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
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>> ream.download&checksum=ee84d77dc3ebd445548c5b0950c6558e&algorithm=MD5"
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>> D5/ee84d77dc3ebd445548c5b0950c6558e"
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>> Curve/data/NCAT_atn_10.bin
>> -- Fetching
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>> ream.download&checksum=6277cb5a4c6e724161c8cf3595f885c1&algorithm=MD5"
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>> [ 26%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateMDBFile.cc.o
>> -- [download 10% complete]
>> -- [download 86% complete]
>> -- [download 11% complete]
>> [ 26%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVGeometryVoxelSt
>> oreMessenger.cc.o
>> -- [download 12% complete]
>> -- [download 13% complete]
>> -- [download 99% complete]
>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTwistedBox.cc.o
>> -- [download 14% complete]
>> -- [download 100% complete]
>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxel.cc.o
>> -- [download 87% complete]
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/a9cd0e61d8f9f0a033b5ebb9054aebe1"
>> [ 27%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_atn_2.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=0ecbce48f40182180e886377904c8a5b&algorithm=MD5"
>> -- [download 15% complete]
>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelP
>> arameterizedMessenger.cc.o
>> -- [download 0% complete]
>> -- [download 100% complete]
>> -- [download 16% complete]
>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateMultiSensitiveDetector.cc.o
>> -- [download 88% complete]
>> -- [download 17% complete]
>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelO
>> utputMessenger.cc.o
>> -- [download 0% complete]
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>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVoxelBoxParamete
>> rizedMessenger.cc.o
>> -- [download 5% complete]
>> -- [download 21% complete]
>> -- [download 6% complete]
>> [ 27%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCPETSystem.cc.o
>> -- [download 7% complete]
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>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateSurface.cc.o
>> -- [download 11% complete]
>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCTScannerSystem.cc.o
>> -- [download 23% complete]
>> -- [download 12% complete]
>> -- [download 13% complete]
>> -- [download 14% complete]
>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GatePara.cc.o
>> -- [download 15% complete]
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>> -- [download 17% complete]
>> -- [download 24% complete]
>> -- [download 18% complete]
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>> -- [download 20% complete]
>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateFictitiousVoxelM
>> apParameterized.cc.o
>> -- [download 91% complete]
>> -- [download 21% complete]
>> -- [download 22% complete]
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>> -- [download 92% complete]
>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVoxelBoxParameterization.cc.o
>> -- [download 30% complete]
>> -- [download 31% complete]
>> -- [download 27% complete]
>> -- [download 32% complete]
>> -- [download 33% complete]
>> -- [download 34% complete]
>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateFictitiousVoxelMapParam.cc.o
>> -- [download 35% complete]
>> -- [download 93% complete]
>> -- [download 36% complete]
>> -- [download 28% complete]
>> -- [download 37% complete]
>> -- [download 38% complete]
>> [ 28%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolume.cc.o
>> -- [download 39% complete]
>> -- [download 29% complete]
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>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateSphereRepeater.cc.o
>> -- [download 59% complete]
>> -- [download 96% complete]
>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTab
>> ulatedTranslatorMessenger.cc.o
>> -- [download 60% complete]
>> -- [download 61% complete]
>> -- [download 62% complete]
>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateSystemComponentMessenger.cc.o
>> -- [download 31% complete]
>> -- [download 63% complete]
>> -- [download 64% complete]
>> -- [download 65% complete]
>> -- [download 66% complete]
>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateWedge.cc.o
>> -- [download 67% complete]
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>> -- [download 68% complete]
>> -- [download 32% complete]
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>> -- [download 98% complete]
>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateBoxReplicaPlacement.cc.o
>> -- [download 72% complete]
>> -- [download 73% complete]
>> -- [download 74% complete]
>> -- [download 75% complete]
>> -- [download 33% complete]
>> -- [download 76% complete]
>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCylinderMessenger.cc.o
>> -- [download 77% complete]
>> -- [download 78% complete]
>> -- [download 79% complete]
>> -- [download 99% complete]
>> -- [download 80% complete]
>> [ 29%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateObjectRepeaterMessenger.cc.o
>> -- [download 34% complete]
>> -- [download 81% complete]
>> -- [download 82% complete]
>> [ 30%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateBoxMessenger.cc.o
>> -- [download 83% complete]
>> -- [download 100% complete]
>> -- [download 84% complete]
>> -- [download 85% complete]
>> [ 30%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCone.cc.o
>> -- [download 86% complete]
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/5ca0fd75b6c76fb7cc18e782dfc14576"
>> [ 31%] -- [download 87% complete]
>> Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_atn_3.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=044a158a2617c05ed8fb657a27ed23ff&algorithm=MD5"
>> -- [download 35% complete]
>> -- [download 88% complete]
>> [ 31%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateOutputVolumeID.cc.o
>> -- [download 89% complete]
>> -- [download 100% complete]
>> [ 31%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateObjectRepeaterLi
>> stMessenger.cc.o
>> -- [download 90% complete]
>> -- [download 36% complete]
>> -- [download 91% complete]
>> -- [download 92% complete]
>> [ 31%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateFakeDetectorConstruction.cc.o
>> -- [download 93% complete]
>> -- [download 94% complete]
>> -- [download 95% complete]
>> [ 31%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTrapMessenger.cc.o
>> -- [download 96% complete]
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>> -- [download 37% complete]
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>> -- [download 1% complete]
>> -- [download 99% complete]
>> -- [download 100% complete]
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/0ecbce48f40182180e886377904c8a5b"
>> [ 31%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_atn_4.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=63d5e31f2052aace22eb2b448488f462&algorithm=MD5"
>> -- [download 2% complete]
>> [ 31%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeneralTrpdMessenger.cc.o
>> -- [download 38% complete]
>> -- [download 100% complete]
>> -- [download 3% complete]
>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelInt
>> erfileReader.cc.o
>> -- [download 4% complete]
>> -- [download 5% complete]
>> -- [download 6% complete]
>> -- [download 39% complete]
>> -- [download 7% complete]
>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalize
>> dVolumeMessenger.cc.o
>> -- [download 0% complete]
>> -- [download 8% complete]
>> -- [download 9% complete]
>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateBox.cc.o
>> -- [download 10% complete]
>> -- [download 1% complete]
>> -- [download 11% complete]
>> -- [download 40% complete]
>> -- [download 12% complete]
>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateSystemComponentL
>> istMessenger.cc.o
>> -- [download 13% complete]
>> -- [download 41% complete]
>> -- [download 14% complete]
>> -- [download 2% complete]
>> [ 32%] -- [download 15% complete]
>> Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVoxelOutput.cc.o
>> -- [download 16% complete]
>> -- [download 17% complete]
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>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateRotationMove.cc.o
>> -- [download 30% complete]
>> -- [download 31% complete]
>> -- [download 32% complete]
>> -- [download 47% complete]
>> -- [download 33% complete]
>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateDMapreadvol.cc.o
>> -- [download 34% complete]
>> [ 32%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTestReader.cc.o
>> -- [download 35% complete]
>> -- [download 36% complete]
>> -- [download 48% complete]
>> -- [download 37% complete]
>> -- [download 38% complete]
>> -- [download 39% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateCutTubsMessenger.cc.o
>> -- [download 40% complete]
>> -- [download 41% complete]
>> -- [download 42% complete]
>> -- [download 43% complete]
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>> -- [download 48% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelRan
>> geTranslatorMessenger.cc.o
>> -- [download 49% complete]
>> -- [download 50% complete]
>> -- [download 51% complete]
>> -- [download 50% complete]
>> -- [download 52% complete]
>> -- [download 53% complete]
>> -- [download 54% complete]
>> -- [download 55% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGenericRepeater.cc.o
>> -- [download 7% complete]
>> -- [download 56% complete]
>> -- [download 57% complete]
>> -- [download 58% complete]
>> -- [download 59% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVImageVolume.cc.o
>> -- [download 60% complete]
>> -- [download 61% complete]
>> -- [download 51% complete]
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>> -- [download 79% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateParallelBeam.cc.o
>> -- [download 80% complete]
>> -- [download 11% complete]
>> -- [download 81% complete]
>> -- [download 82% complete]
>> -- [download 83% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GatePVParameterisation.cc.o
>> -- [download 84% complete]
>> -- [download 12% complete]
>> [ 33%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateOpticalSystem.cc.o
>> -- [download 55% complete]
>> -- [download 85% complete]
>> -- [download 86% complete]
>> -- [download 13% complete]
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>> -- [download 90% complete]
>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTorusMessenger.cc.o
>> -- [download 58% complete]
>> -- [download 91% complete]
>> -- [download 59% complete]
>> -- [download 92% complete]
>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateGenericTrapMessenger.cc.o
>> -- [download 93% complete]
>> -- [download 15% complete]
>> -- [download 94% complete]
>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParam
>> etrisedVolume.cc.o
>> -- [download 60% complete]
>> -- [download 95% complete]
>> -- [download 16% complete]
>> -- [download 96% complete]
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>> -- [download 17% complete]
>> -- [download 99% complete]
>> -- [download 18% complete]
>> -- [download 100% complete]
>> -- [download 62% complete]
>> -- Downloaded object:
>> "/home/elnur/Programs/gate_v7.1-build/ExternalData/Objects/M
>> D5/044a158a2617c05ed8fb657a27ed23ff"
>> [ 34%] Generating
>> /home/elnur/Programs/gate_v7.1/examples/example_TimeActivity
>> Curve/data/NCAT_atn_5.bin
>> -- Fetching
>> "http://midas3.kitware.com/midas/api/rest?method=midas.bitst
>> ream.download&checksum=4d2109f58e05d361e7a0e5ff6169fc58&algorithm=MD5"
>> -- [download 100% complete]
>> -- [download 63% complete]
>> -- [download 19% complete]
>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateFictitiousVoxelMap.cc.o
>> -- [download 20% complete]
>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateRegularParameterization.cc.o
>> -- [download 0% complete]
>> -- [download 1% complete]
>> -- [download 64% complete]
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>> -- [download 65% complete]
>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVVolume.cc.o
>> -- [download 22% complete]
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>> [ 34%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateRegularParameterized.cc.o
>> -- [download 16% complete]
>> -- [download 67% complete]
>> -- [download 17% complete]
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>> -- [download 68% complete]
>> -- [download 22% complete]
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>> -- [download 24% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeaterMessenger.cc.o
>> -- [download 25% complete]
>> -- [download 26% complete]
>> -- [download 27% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTetraMessenger.cc.o
>> -- [download 69% complete]
>> -- [download 28% complete]
>> -- [download 26% complete]
>> -- [download 29% complete]
>> -- [download 30% complete]
>> -- [download 31% complete]
>> -- [download 27% complete]
>> -- [download 32% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTrap.cc.o
>> -- [download 33% complete]
>> -- [download 70% complete]
>> -- [download 34% complete]
>> -- [download 28% complete]
>> -- [download 35% complete]
>> -- [download 36% complete]
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>> -- [download 29% complete]
>> -- [download 39% complete]
>> -- [download 40% complete]
>> -- [download 71% complete]
>> -- [download 41% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateTranslationMoveMessenger.cc.o
>> -- [download 42% complete]
>> -- [download 43% complete]
>> -- [download 30% complete]
>> -- [download 44% complete]
>> -- [download 45% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateLinearRepeater.cc.o
>> -- [download 46% complete]
>> -- [download 47% complete]
>> -- [download 48% complete]
>> -- [download 72% complete]
>> -- [download 49% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateHexagone.cc.o
>> -- [download 50% complete]
>> -- [download 51% complete]
>> -- [download 31% complete]
>> -- [download 52% complete]
>> -- [download 73% complete]
>> -- [download 53% complete]
>> -- [download 54% complete]
>> -- [download 55% complete]
>> [ 35%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateBoxComponent.cc.o
>> -- [download 32% complete]
>> -- [download 56% complete]
>> -- [download 57% complete]
>> -- [download 58% complete]
>> -- [download 74% complete]
>> -- [download 59% complete]
>> -- [download 60% complete]
>> -- [download 61% complete]
>> [ 36%] Building CXX object
>> CMakeFiles/Gate.dir/source/geometry/src/GateVSystem.cc.o
>> -- [download 62% complete]
>> -- [download 63% complete]
>> -- [download 75% complete]
>> -- [download 64% complete]
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>> -- [download 77% complete]
>
>
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