[Gate-users] Problems with installing Gate_v7.1
Elnur Sadihov
forward1292 at gmail.com
Mon Dec 19 09:00:16 CET 2016
Hello everyone,
I'm trying to install Gate_v7.1 on Ubuntu 14.04 LTS.
Installed packages:
cmake 3.6.1
ccmake 2.8.12.2
CLHEP 2.2.0.4
root 5.34
geant4.10.01.p03
I follow compilation instructions
http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.1
After configuring Gate_v.7.1 I press 'g' to generate the compilation
environment. But Warning appears:
CMake Warning at CMakeLists.txt:195 (ADD_EXECUTABLE):
Cannot generate a safe runtime search path for target Gate because files
in
some directories may conflict with libraries in implicit directories:
runtime library [libQtOpenGL.so.4] in /usr/lib/x86_64-linux-gnu may be
hidden by files in:
/usr/local/MATLAB/R2014b/bin/glnxa64
runtime library [libQtGui.so.4] in /usr/lib/x86_64-linux-gnu may be
hidden by files in:
/usr/local/MATLAB/R2014b/bin/glnxa64
runtime library [libQtCore.so.4] in /usr/lib/x86_64-linux-gnu may be
hidden by files in:
/usr/local/MATLAB/R2014b/bin/glnxa64
Some of these libraries may not be found correctly.
Then I run command 'make -j4' and it finally gives the error. Below there
is a log:
Scanning dependencies of target itkzlib
Scanning dependencies of target GateBenchmarkData
Scanning dependencies of target GateExampleData
Scanning dependencies of target MetaIO
[ 0%] Generating
/home/elnur/Programs/gate_v7.1/benchmarks/benchPET/benchPET.pdf
[ 0%] Generating
/home/elnur/Programs/gate_v7.1/examples/example_TimeActivityCurve/TAC_Example.png
-- Fetching "
http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=0a63785ee8d79c3031523f20c0b7c4cc&algorithm=MD5
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[ 0%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/adler32.o
[ 1%] Building CXX object itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaUtils.o
[ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/compress.o
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[ 2%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/deflate.o
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[ 2%] Generating
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Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inffast.o
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itk-mhd/MetaIO/CMakeFiles/MetaIO.dir/metaBlob.o
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-- Downloaded object:
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Linking C static library libitkzlib.a
[ 3%] Generating
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CMakeFiles/Gate.dir/source/geometry/src/GateTorusMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateGenericTrapMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisedVolume.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateFictitiousVoxelMap.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateVVolume.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeaterMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTetraMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTranslationMoveMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateLinearRepeater.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateHexagone.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateBoxComponent.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisedVolumeMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateDMapdt_sedt.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateParaboloidMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateTwistedTrapMessenger.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolume.cc.o
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CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeater.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToImageCT.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateEmCalculatorActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSinoToEcat7.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateDistributionManual.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToSinoAccelMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateUIcmdWith2Vector.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateCoincidenceGeometrySelector.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateProjectionSet.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateCoincidenceDigiMaker.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSimplifiedDecayTransition.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateNoise.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateStopOnScriptActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateProductionAndStoppingActor.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateDistributionGauss.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToRoot.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateEnergySpectrumActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateParticleInVolumeActor.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GatePhaseSpaceActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSystemFilter.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToGPUImageSPECTMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateROOTBasicOutputMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateReadout.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToBinary.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateEnergyEfficiency.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSETLEDoseActor.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateHitFileReaderMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateTrackLengthActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateCrossSectionProductionActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToProjectionSet.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateLinearBlurringLaw.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GatePulseAdderGPUSpect.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateWashOutActor.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GatePulseAdderMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateBlurringWithIntrinsicResolutionMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateHitFileReader.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSinoAccelToEcat7.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateDistributionExponential.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSinoToEcat7Messenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateDistributionListMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateCrystalSD.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateKermaActorMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToLMF.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateArrayParamsFinder.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GatePhaseSpaceActor.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateCalibrationMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateCrosstalkMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSingleDigi.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateToLMFMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateInverseSquareBlurringLawMessenger.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateBlurring.cc.o
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CMakeFiles/Gate.dir/source/digits_hits/src/GateSinoAccelToEcat7Messenger.cc.o
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CMake Error at
/home/elnur/Programs/gate_v7.1/cmake-modules/ExternalData.cmake:717
(message):
Object MD5=9c0989256d3b6e9b213359cd4a3b6daa not found at:
http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=9c0989256d3b6e9b213359cd4a3b6daa&algorithm=MD5
("Timeout was reached")
Call Stack (most recent call first):
/home/elnur/Programs/gate_v7.1/cmake-modules/ExternalData.cmake:739
(_ExternalData_download_object)
make[2]: ***
[/home/elnur/Programs/gate_v7.1/examples/example_ROOT_Analyse/data_PET.root.md5-stamp]
Error 1
make[2]: *** Waiting for unfinished jobs....
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-- Downloaded object:
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make[1]: *** [CMakeFiles/GateExampleData.dir/all] Error 2
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CMakeFiles/Gate.dir/source/externals/clhep/src/CLHEP/Matrix/GenMatrix.cc.o
[ 98%] Building CXX object
CMakeFiles/Gate.dir/source/externals/clhep/src/CLHEP/Matrix/Matrix.cc.o
[ 98%] Building CXX object
CMakeFiles/Gate.dir/source/externals/clhep/src/CLHEP/Matrix/MatrixInvert.cc.o
[ 98%] Building CXX object
CMakeFiles/Gate.dir/source/externals/clhep/src/CLHEP/RandomObjects/RandomVector.cc.o
[ 99%] Building CXX object
CMakeFiles/Gate.dir/source/externals/clhep/src/CLHEP/RandomObjects/RandMultiGauss.cc.o
Linking CXX executable Gate
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_free at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_use_certificate_chain_file at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_get_error at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_use_PrivateKey_file at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`EVP_sha1 at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_read at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_set_quiet_shutdown at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSLv23_method at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_new at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_peek at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_new at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`HMAC at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_write at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_CTX_load_verify_locations at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_free at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_set_fd at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_connect at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_library_init at OPENSSL_1.0.0'
/home/elnur/Programs/root_v5.34/lib/libNet.so: undefined reference to
`SSL_shutdown at OPENSSL_1.0.0'
collect2: error: ld returned 1 exit status
make[2]: *** [Gate] Error 1
make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
make: *** [all] Error 2
I will be very appreciate for your help.
Best regards,
Elnur
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