[Gate-users] Crash when running an example macros simu_ct.mac
Elnur Sadihov
forward1292 at gmail.com
Thu Aug 25 15:49:38 CEST 2016
I tried to use Ranlux64 and JamesRandom random generators and it works!
Thank you very much!
Best regards,
Elnur
2016-08-25 12:46 GMT+03:00 Barbara Genocchi <Barbara.Genocchi at icr.ac.uk>:
> Hi,
>
> have you tried to change random engine?
>
> In my Gate for some reason Marsenne Twister doesn't work.....
>
>
> Hope this help!
>
> Barbara
> ------------------------------
> *From:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org>
> on behalf of Elnur Sadihov <forward1292 at gmail.com>
> *Sent:* 25 August 2016 08:11
> *To:* gate-users at lists.opengatecollaboration.org
> *Subject:* [Gate-users] Crash when running an example macros simu_ct.mac
>
> Hello, Gate users!
>
> I'd like to simulate CT system. For this reason I've downloaded an example
> tp_CT_solution.tar.gz which can be downloaded on the next link:
> http://www.opengatecollaboration.org/Materials2015/
> PracticalExercises2015/CT .
>
> I've untared this file and I'm trying to run the main macros simu_ct.mac.
> But something goes wrong. I use Ubuntu 14.04 LTS, root v5.34/34,
> geant4-09-06-patch-03, gate_v7.0. When I type:
> Gate simu_ct.mac
> the next lines appear in the terminal:
>
> g4user at g4user:~/My_programs/gate_v7.0/examples/tp_CT_solution/solution$
> Gate simu_ct.mac
> [G4]
> [G4] *************************************************************
> [G4] Geant4 version Name: geant4-09-06-patch-03 (14-March-2014)
> [G4] Copyright : Geant4 Collaboration
> [G4] Reference : NIM A 506 (2003), 250-303
> [G4] WWW : http://cern.ch/geant4
> [G4] *************************************************************
> [G4]
> [Core-0] Initialization of geometry
> [Core-0] Initialization of physics
> [Physic-0] WARNING: manual physic lists are being deprecated.
> Please, use physic list builder mechanism instead. Related documentation
> can be found at:
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:
> Setting_up_the_physics
> [Core-0] Initialization of actors
> [Core-0]
> [Core-0] ************************************************************
> **********
> [Core-0] GATE version name: gate_v7.0
>
> [Core-0] Copyright : OpenGATE
> Collaboration
> [Core-0] Reference : Phys. Med. Biol. 49 (2004)
> 4543-4561
> [Core-0] Reference : Phys. Med. Biol. 56 (2011)
> 881-901
> [Core-0] WWW : http://www.opengatecollaboration.org
>
> [Core-0] ************************************************************
> **********
> [Core-0]
> [Core-0] You are using Geant4 version 9.6.3
> [Core-0] Starting macro simu_ct.mac
> Rmin/gate/aluminiumBall/geometry/setRmin
> Rmin/gate/spineBoneBall/geometry/setRmin
>
>
> List of Enabled processes:
>
>
> === Process: eMultipleScattering ===
> Particle: e+
> * Model(s):
> - Urban95Model
> Particle: e-
> * Model(s):
> - Urban95Model
>
> === Process: PhotoElectric ===
> Particle: gamma
> * Model(s):
> - StandardModel
>
> === Process: Compton ===
> Particle: gamma
> * Model(s):
> - StandardModel
>
> === Process: Bremsstrahlung ===
> Particle: e+
> * Model(s):
> - StandardModel
> Particle: e-
> * Model(s):
> - StandardModel
>
> === Process: ElectronIonisation ===
> Particle: e+
> * Model(s):
> - StandardModel
> Particle: e-
> * Model(s):
> - StandardModel
>
> === Process: RayleighScattering ===
> Particle: gamma
> * Model(s):
> - PenelopeModel
>
>
>
>
> List of initialized processes:
>
>
>
> [Core-0] Initialization of geometry
> [Core-0] Initialization of physics
> [Physic-0] WARNING: manual physic lists are being deprecated.
> Please, use physic list builder mechanism instead. Related documentation
> can be found at:
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:
> Setting_up_the_physics
> [Core-0] Initialization of actors
> Verbosity Set to: 0
> GateSourceMgr::ListSources: List of the sources in the source manager
> Source --------------> xraygun
> ID : 0
> type : gps
> activity (Bq) : 0
> startTime (s) : 0
> time (s) : 0
> forcedUnstable : 0
> forcedHalfLife (s) : -0.693147
> verboseLevel : 0
> relative to vol : World
> ----------------------
>
> [Acquisition-0]
> [Acquisition-0] ============= Source initialization =============
> [Acquisition-0]
> [Acquisition-0] ============= Acquisition starts! =============
> [Acquisition-0] Simulation start time = 0 sec
> [Acquisition-0] Simulation end time = 1 sec
> [Acquisition-0] Simulation will have = 1 run(s)
>
> --------- MTwist engine status ---------
> Initial seed = 1234
> Current index = 131
> Array status mt[] =
> 1234 3159640283 4062961311 3954462607 3112783424
> 2849714703 731821095 2232873578 1251953424 3917199038
> 231030171 268845362 2344188614 1849447265 2383103214
> 2227731755 1714639421 1491439037 462325566 5081481
> 737186849 236395034 2597008984 1186503577 323074832
> ......................................................................................
> ( here is a lot of lines with numbers like above)
> *** Break *** segmentation violation
>
>
>
> ===========================================================
> There was a crash.
> This is the entire stack trace of all threads:
> ===========================================================
> #0 0x00007fce8a8b15cc in __libc_waitpid (pid=12263, stat_loc=stat_loc
> entry=0x7fff2e36ab40, options=options
> entry=0) at ../sysdeps/unix/sysv/linux/waitpid.c:31
> #1 0x00007fce8a8361d2 in do_system (line=<optimized out>) at
> ../sysdeps/posix/system.c:148
> #2 0x00007fce8d267f23 in TUnixSystem::StackTrace() () from
> /home/g4user/My_programs/root_v5.34/lib/libCore.so
> #3 0x00007fce8d269b4c in TUnixSystem::DispatchSignals(ESignals) () from
> /home/g4user/My_programs/root_v5.34/lib/libCore.so
> #4 <signal handler called>
> #5 0x00007fce8d736de0 in CLHEP::MTwistEngine::showStatus() const () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4clhep.so
> #6 0x0000000000825f21 in GateApplicationMgr::StartDAQ() ()
> #7 0x0000000000805fe0 in GateApplicationMgrMessenger::SetNewValue(G4UIcommand*,
> G4String) ()
> #8 0x00007fce8dbf7f7f in G4UIcommand::DoIt(G4String) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #9 0x00007fce8dc0e568 in G4UImanager::ApplyCommand(char const*) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #10 0x00007fce8dbe78d7 in G4UIbatch::ExecCommand(G4String const&) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #11 0x00007fce8dbe8f6b in G4UIbatch::SessionStart() () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #12 0x00007fce8dc0aaf3 in G4UImanager::ExecuteMacroFile(char const*) ()
> from /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #13 0x00007fce8dc02142 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
> G4String) () from /home/g4user/My_programs/geant4.9.6.p03-install/lib/
> libG4intercoms.so
> #14 0x00007fce8dbf7f7f in G4UIcommand::DoIt(G4String) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #15 0x00007fce8dc0e568 in G4UImanager::ApplyCommand(char const*) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #16 0x00000000004e7223 in main ()
> ===========================================================
>
>
> The lines below might hint at the cause of the crash.
> If they do not help you then please submit a bug report at
> http://root.cern.ch/bugs. Please post the ENTIRE stack trace
> from above as an attachment in addition to anything else
> that might help us fixing this issue.
> ===========================================================
> #5 0x00007fce8d736de0 in CLHEP::MTwistEngine::showStatus() const () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4clhep.so
> #6 0x0000000000825f21 in GateApplicationMgr::StartDAQ() ()
> #7 0x0000000000805fe0 in GateApplicationMgrMessenger::SetNewValue(G4UIcommand*,
> G4String) ()
> #8 0x00007fce8dbf7f7f in G4UIcommand::DoIt(G4String) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #9 0x00007fce8dc0e568 in G4UImanager::ApplyCommand(char const*) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #10 0x00007fce8dbe78d7 in G4UIbatch::ExecCommand(G4String const&) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #11 0x00007fce8dbe8f6b in G4UIbatch::SessionStart() () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #12 0x00007fce8dc0aaf3 in G4UImanager::ExecuteMacroFile(char const*) ()
> from /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #13 0x00007fce8dc02142 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
> G4String) () from /home/g4user/My_programs/geant4.9.6.p03-install/lib/
> libG4intercoms.so
> #14 0x00007fce8dbf7f7f in G4UIcommand::DoIt(G4String) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #15 0x00007fce8dc0e568 in G4UImanager::ApplyCommand(char const*) () from
> /home/g4user/My_programs/geant4.9.6.p03-install/lib/libG4intercoms.so
> #16 0x00000000004e7223 in main ()
> ===========================================================
>
> Please help me to solve this problem. Thanks in advance!
>
> Best regards,
> Elnur
>
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