[Gate-users] gate7.1 installation on mac OSX 10.10
Beien Wang
benjaminwang91 at gmail.com
Mon Sep 21 14:17:26 CEST 2015
Hi Pete,
It seems to be a problem with related xml libraries. But the building seems
to be able to ignore the error and continue, which is strange...
I installed Gate 7.1 on a CentOS cluster. There was no error message
pumping during the installation (at least I didn't notice if the error
doesn't stop installation...). But whenever I call Material.xml and
Surface.xml in my simulation, an error occurs... So I basically cannot do
optical simulation with it. I cannot solve it so I installed Gate 7.0
instead, and everything works fine. Maybe you can try lower version of Gate
as well. Good luck!
Best,
Beien
On 21 September 2015 at 05:08, Pete Z. Wu <pzw at ns.ph.liv.ac.uk> wrote:
> Hi Again,
>
> Please find below the entire output as viewed form the command line on
> macbook pro OSX10. The cmake command and its flags are also shown below.
> Please can someone help me to resolve my problem regarding the installation
> of gate v7.1?
>
>
> root at machintosh$ cd gate_v7.1-build/
> root at machintosh$ pwd
> /usr/local/gate_v7.1-build
> root at machintosh$ cmake
> -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
> -DGATE_DOWNLOAD_BENCHMARKS_DATA=ON -DGATE_DOWNLOAD_EXAMPLES_DATA=ON
> -DGATE_USE_ECAT7=OFF -DGATE_USE_LMF=OFF -DGATE_USE_OPTICAL=ON
> -DGATE_USE_GPU=OFF -DGATE_USE_GEANT4_UIVIS=ON -DGEANT4_USE_SYSTEM_CLHEP=OFF
> /usr/local/gate_v7.1
> -- The C compiler identification is AppleClang 6.0.0.6000051
> -- The CXX compiler identification is AppleClang 6.0.0.6000051
> -- Check for working C compiler:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
> -- Check for working C compiler:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
> -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working CXX compiler:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
> -- Check for working CXX compiler:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
> -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Found ROOT 5.34/32 in /opt/local/libexec/root5
> -- Found PkgConfig: /opt/local/bin/pkg-config (found version "0.28")
> -- Found LibXml2: /Library/Frameworks/libxml2.framework
> -- Configuring done
> -- Generating done
> CMake Warning:
> Manually-specified variables were not used by the project:
>
> GEANT4_USE_SYSTEM_CLHEP
>
>
> -- Build files have been written to: /usr/local/gate_v7.1-build
> root at machintosh$ make -j2
> Scanning dependencies of target itkzlib
> Scanning dependencies of target MetaIO
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> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/730355e81d3c478e92b09f3764f126c4"
> [ 8%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_10.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=494a61c7968269d98f8ccf35bfb0dfdd&algorithm=MD5
> "
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> -- [download 53% complet/MetaIO.dir/metaFEMObject.o
> Scanning dependencies of target GateExampleData
> [ 7%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/TAC_Example.png
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=0a63785ee8d79c3031523f20c0b7c4cc&algorithm=MD5
> "
> [ 7%] Linking CXX static library libMetaIO.a
> [ 7%] Built target MetaIO
> [ 8%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_1.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=730355e81d3c478e92b09f3764f126c4&algorithm=MD5
> "
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> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/0a63785ee8d79c3031523f20c0b7c4cc"
> Scanning dependencies of target Gate
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> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/730355e81d3c478e92b09f3764f126c4"
> [ 8%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_10.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=494a61c7968269d98f8ccf35bfb0dfdd&algorithm=MD5
> "
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> [ 8%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o
> -- [download 98% complete]
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> -- [download 100% complete]
> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/494a61c7968269d98f8ccf35bfb0dfdd"
> [ 8%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_2.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=4373ca3fd7b365b6a327b4f443abac50&algorithm=MD5
> "
> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o
> -- [download 0% complete]
> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o
> -- [download 1% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o
> -- [download 6% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o
> -- [download 13% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o
> -- [download 17% complete]
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> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o
> -- [download 26% complete]
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> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateAngularRepeater.cc.o
> -- [download 29% complete]
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> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateAngularRepeaterMessenger.cc.o
> -- [download 32% complete]
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> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeater.cc.o
> -- [download 35% complete]
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> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeaterMessenger.cc.o
> -- [download 38% complete]
> -- [download 39% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBox.cc.o
> -- [download 40% complete]
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> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxComponent.cc.o
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxMessenger.cc.o
> -- [download 44% complete]
> -- [download 45% complete]
> -- [download 46% complete]
> -- [download 47% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxReplica.cc.o
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxReplicaPlacement.cc.o
> -- [download 48% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxel.cc.o
> -- [download 49% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelOutput.cc.o
> -- [download 50% complete]
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> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelOutputMessenger.cc.o
> -- [download 58% complete]
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> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParam.cc.o
> -- [download 66% complete]
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> [ 11%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParameterization.cc.o
> -- [download 70% complete]
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> [ 8%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o
> -- [download 83% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o
> -- [download 98% complete]
> -- [download 99% complete]
> -- [download 100% complete]
> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/494a61c7968269d98f8ccf35bfb0dfdd"
> [ 8%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_2.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=4373ca3fd7b365b6a327b4f443abac50&algorithm=MD5
> "
> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o
> -- [download 0% complete]
> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o
> -- [download 1% complete]
> -- [download 2% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o
> -- [download 6% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o
> -- [download 13% complete]
> -- [download 14% complete]
> -- [download 15% complete]
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> [ 8%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o
> -- [download 17% complete]
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> -- [download 25% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o
> -- [download 26% complete]
> -- [download 27% complete]
> -- [download 28% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateAngularRepeater.cc.o
> -- [download 29% complete]
> -- [download 30% complete]
> -- [download 31% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateAngularRepeaterMessenger.cc.o
> -- [download 32% complete]
> -- [download 33% complete]
> -- [download 34% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeater.cc.o
> -- [download 35% complete]
> -- [download 36% complete]
> -- [download 37% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateArrayRepeaterMessenger.cc.o
> -- [download 38% complete]
> -- [download 39% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBox.cc.o
> -- [download 40% complete]
> -- [download 41% complete]
> -- [download 42% complete]
> -- [download 43% complete]
> [ 9%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxComponent.cc.o
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxMessenger.cc.o
> -- [download 44% complete]
> -- [download 45% complete]
> -- [download 46% complete]
> -- [download 47% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxReplica.cc.o
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateBoxReplicaPlacement.cc.o
> -- [download 48% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxel.cc.o
> -- [download 49% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelOutput.cc.o
> -- [download 50% complete]
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> -- [download 55% complete]
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> -- [download 57% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelOutputMessenger.cc.o
> -- [download 58% complete]
> -- [download 59% complete]
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> -- [download 63% complete]
> -- [download 64% complete]
> -- [download 65% complete]
> [ 10%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParam.cc.o
> -- [download 66% complete]
> -- [download 67% complete]
> -- [download 68% complete]
> -- [download 69% complete]
> [ 11%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParameterization.cc.o
> -- [download 70% complete]
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> [ 11%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParameterized.cc.o
> -- [download 79% complcomplete]
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> -- [download 78% complete]
> [ 11%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParameterized.cc.o
> -- [download 79% complete]
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> [ 11%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCompressedVoxelParameterizedMessenger.cc.o
> -- [download 87% complete]
> -- [download 88% complete]
> -- [download 89% complete]
> -- [download 90% complete]
> -- [download 91% complete]
> [ 11%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateCone.cc.o
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> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_3.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=ef43ddc95ae120b5d05eb09cb9371e2a&algorithm=MD5
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> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_3.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=ef43ddc95ae120b5d05eb09cb9371e2a&algorithm=MD5
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> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/ef43ddc95ae120b5d05eb09cb9371e2a"
> [ 16%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_4.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=6e1dd112c3ff48913d55e5754ccb0510&algorithm=MD5
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> CMakeFiles/Gate.dir/source/geometry/src/GateElTubMessenger.cc.o
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> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/ef43ddc95ae120b5d05eb09cb9371e2a"
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> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_4.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=6e1dd112c3ff48913d55e5754ccb0510&algorithm=MD5
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> -- [download 33% complete]
> -- [download 34% complete]
> [ 18%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelInterfileReaderMessenger.cc.o
> -- [download 35% complete]
> -- [download 36% complete]
> -- [download 37% complete]
> -- [download 38% complete]
> [ 18%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelRangeTranslator.cc.o
> -- [download 39% complete]
> -- [download 40% complete]
> -- [download 41% complete]
> -- [download 42% complete]
> -- [download 43% complete]
> [ 18%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelRangeTranslatorMessenger.cc.o
> -- [download 44% complete]
> -- [download 45% complete]
> -- [download 46% complete]
> -- [download 47% complete]
> [ 18%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTabulatedTranslator.cc.o
> -- [download 48% complete]
> -- [download 49% complete]
> -- [download 50% complete]
> -- [download 51% complete]
> -- [download 52% complete]
> -- [download 53% complete]
> -- [download 54% complete]
> -- [download 55% complete]
> -- [download 56% complete]
> [ 18%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTabulatedTranslatorMessenger.cc.o
> -- [download 57% complete]
> -- [download 58% complete]
> -- [download 59% complete]
> -- [download 60% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTestReader.cc.o
> -- [download 61% complete]
> -- [download 62% complete]
> -- [download 63% complete]
> -- [download 64% complete]
> -- [download 65% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelTestReaderMessenger.cc.o
> -- [download 66% complete]
> -- [download 67% complete]
> -- [download 68% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHexagone.cc.o
> -- [download 69% complete]
> -- [download 70% complete]
> -- [download 71% complete]
> -- [download 72% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHexagoneMessenger.cc.o
> -- [download 73% complete]
> -- [download 74% complete]
> -- [doc.o
> -- [download 69% complete]
> -- [download 70% complete]
> -- [download 71% complete]
> -- [download 72% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHexagoneMessenger.cc.o
> -- [download 73% complete]
> -- [download 74% complete]
> -- [download 75% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHoleParameterisation.cc.o
> -- [download 76% complete]
> -- [download 77% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHype.cc.o
> -- [download 78% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHypeMessenger.cc.o
> -- [download 79% complete]
> -- [download 80% complete]
> -- [download 81% complete]
> -- [download 82% complete]
> -- [download 83% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageBox.cc.o
> -- [download 84% complete]
> -- [download 85% complete]
> -- [download 86% complete]
> -- [download 87% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisation.cc.o
> -- [download 88% complete]
> -- [download 89% complete]
> -- [download 90% complete]
> -- [download 91% complete]
> -- [download 92% complete]
> -- [download 93% complete]
> -- [download 94% complete]
> -- [download 95% complete]
> -- [download 96% complete]
> -- [download 97% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisedVolume.cc.o
> -- [download 98% complete]
> -- [download 99% complete]
> -- [download 100% complete]
> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/6e1dd112c3ff48913d55e5754ccb0510"
> [ 20%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_5.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=d746dd3bf5942a29c470aefff9280236&algorithm=MD5
> "
> -- [download 0% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisedVolumeMessenger.cc.o
> -- [download 1% complete]
> -- [download 2% complete]
> -- [download 3% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolume.cc.o
> -- [download 4% complete]
> -- [download 5% complete]
> -- [download 6% complete]
> -- [download 7% complete]
> -- [download 8% complete]
> -- [download 9% complete]
> -- [download 10% complete]
> -- [download 11% complete]
> -- [download 12% complete]
> -- [download 13% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolumeMessenger.cc.o
> -- [download 14% complete]
> -- [download 15% complete]
> -- [download 16% complete]
> -- [download 17% complete]
> -- [download 18% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolumeSolid.cc.o
> -- [download 19% complete]
> -- [download 20% complete]
> -- [download 21% complete]
> -- [download 22% complete]
> -- [download 23% complete]
> -- [download 24% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolume.cc.o
> -- [download 25% complete]
> -- [download 26% complete]
> -- [download 27% complete]
> -- [download 28% complete]
> -- [download 29% complete]
> -- [download 30% complete]
> -- [download 31% complete]
> -- [download 32% complete]
> -- [download 33% complete]
> -- [download 34% complete]
> -- [download 35% complete]
> -- [download 36% complete]
> -- [download 37% complete]
> -- [download 38% complete]
> -- [download 39% complete]
> -- [download 40% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolumeMessenger.cc.o
> -- [download 41% complete]
> -- [download 42% complete]
> -- [download 43% complete]
> -- [download 44% complete]
> -- [download 45% complete]
> -- [download 46% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolumeSolid.cc.o
> -- [download 47% complete]
> -- [download 48% complete]
> -- [download 49% complete]
> -- [download 50% complete]
> -- [download 51% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularParametrisedVolume.cc.o
> -- [download 52% complete]
> -- [download 53% complete]
> -- [download 54% complete]
> -- [download 55% complete]
> -- [download 56% complete]
> -- [download 57% complete]
> -- [download 58% complete]
> -- [download 59% complete]
> -- [download 60% complete]
> -- [download 61% complete]
> -- [download 62% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularParametrisedVolumeMessenger.cc.o
> -- [download 63% complete]
> -- [download 64% complete]
> -- [download 65% complete]
> -- [download 66% complete]
> -- [download 67% complete]
> -- [download 68% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateLinearRepeater.cc.o
> -- [download 69% complete]
> -- [download 70% complete]
> -- [download 71% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateLinearRepeaterMessenger.cc.o
> -- [download 72% complete]
> -- [download 73% complete]
> -- [download 74% complete]
> [ 22%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateMaterialDatabase.cc.o
> -- [download 75% complete]
> In file included from
> /usr/local/gate_v7.1/source/geometry/src/GateMaterialDatabase.cc:19:
> /usr/local/gate_v7.1/source/general/include/GateXMLDocument.hh:16:10:
> fatal error:
> 'libxml/xmlmemory.h' file not found
> #include <libxml/xmlmemory.h>
> ^
> 1 error generated.
> make[2]: ***
> [CMakeFiles/Gate.dir/source/geometry/src/GateMaterialDatabase.cc.o] Error 1
> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> [ 22%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_6.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=d5a777f0731cae74ec51e94eff676385&algorithm=MD5
> "
> -- [download 76% complete]
> -- [download 77% complete]
> -- [download 78% complete]
> --%2wnload 75% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHoleParameterisation.cc.o
> -- [download 76% complete]
> -- [download 77% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHype.cc.o
> -- [download 78% complete]
> [ 19%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateHypeMessenger.cc.o
> -- [download 79% complete]
> -- [download 80% complete]
> -- [download 81% complete]
> -- [download 82% complete]
> -- [download 83% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageBox.cc.o
> -- [download 84% complete]
> -- [download 85% complete]
> -- [download 86% complete]
> -- [download 87% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisation.cc.o
> -- [download 88% complete]
> -- [download 89% complete]
> -- [download 90% complete]
> -- [download 91% complete]
> -- [download 92% complete]
> -- [download 93% complete]
> -- [download 94% complete]
> -- [download 95% complete]
> -- [download 96% complete]
> -- [download 97% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisedVolume.cc.o
> -- [download 98% complete]
> -- [download 99% complete]
> -- [download 100% complete]
> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/6e1dd112c3ff48913d55e5754ccb0510"
> [ 20%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_5.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=d746dd3bf5942a29c470aefff9280236&algorithm=MD5
> "
> -- [download 0% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageNestedParametrisedVolumeMessenger.cc.o
> -- [download 1% complete]
> -- [download 2% complete]
> -- [download 3% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolume.cc.o
> -- [download 4% complete]
> -- [download 5% complete]
> -- [download 6% complete]
> -- [download 7% complete]
> -- [download 8% complete]
> -- [download 9% complete]
> -- [download 10% complete]
> -- [download 11% complete]
> -- [download 12% complete]
> -- [download 13% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolumeMessenger.cc.o
> -- [download 14% complete]
> -- [download 15% complete]
> -- [download 16% complete]
> -- [download 17% complete]
> -- [download 18% complete]
> [ 20%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedSubVolumeSolid.cc.o
> -- [download 19% complete]
> -- [download 20% complete]
> -- [download 21% complete]
> -- [download 22% complete]
> -- [download 23% complete]
> -- [download 24% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolume.cc.o
> -- [download 25% complete]
> -- [download 26% complete]
> -- [download 27% complete]
> -- [download 28% complete]
> -- [download 29% complete]
> -- [download 30% complete]
> -- [download 31% complete]
> -- [download 32% complete]
> -- [download 33% complete]
> -- [download 34% complete]
> -- [download 35% complete]
> -- [download 36% complete]
> -- [download 37% complete]
> -- [download 38% complete]
> -- [download 39% complete]
> -- [download 40% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolumeMessenger.cc.o
> -- [download 41% complete]
> -- [download 42% complete]
> -- [download 43% complete]
> -- [download 44% complete]
> -- [download 45% complete]
> -- [download 46% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegionalizedVolumeSolid.cc.o
> -- [download 47% complete]
> -- [download 48% complete]
> -- [download 49% complete]
> -- [download 50% complete]
> -- [download 51% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularParametrisedVolume.cc.o
> -- [download 52% complete]
> -- [download 53% complete]
> -- [download 54% complete]
> -- [download 55% complete]
> -- [download 56% complete]
> -- [download 57% complete]
> -- [download 58% complete]
> -- [download 59% complete]
> -- [download 60% complete]
> -- [download 61% complete]
> -- [download 62% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateImageRegularParametrisedVolumeMessenger.cc.o
> -- [download 63% complete]
> -- [download 64% complete]
> -- [download 65% complete]
> -- [download 66% complete]
> -- [download 67% complete]
> -- [download 68% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateLinearRepeater.cc.o
> -- [download 69% complete]
> -- [download 70% complete]
> -- [download 71% complete]
> [ 21%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateLinearRepeaterMessenger.cc.o
> -- [download 72% complete]
> -- [download 73% complete]
> -- [download 74% complete]
> [ 22%] Building CXX object
> CMakeFiles/Gate.dir/source/geometry/src/GateMaterialDatabase.cc.o
> -- [download 75% complete]
> In file included from
> /usr/local/gate_v7.1/source/geometry/src/GateMaterialDatabase.cc:19:
> /usr/local/gate_v7.1/source/general/include/GateXMLDocument.hh:16:10:
> fatal error:
> 'libxml/xmlmemory.h' file not found
> #include <libxml/xmlmemory.h>
> ^
> 1 error generated.
> make[2]: ***
> [CMakeFiles/Gate.dir/source/geometry/src/GateMaterialDatabase.cc.o] Error 1
> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> [ 22%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_6.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=d5a777f0731cae74ec51e94eff676385&algorithm=MD5
> "
> -- [download 76% complete]
> -- [download 77% complete]
> -- [download 78% complete]
> -- [download 79% complete]
> -- [download 0% complete]
> -- [download 80% complete]
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> -- [download 22% complete]
> -- [download 23% complete]
> -- [download 100% complete]
> -- [download 24% complete]
> -- [download 25% complete]
> -- Downloaded object:
> "/usr/local/gate_v7.1-build/ExternalData/Objects/MD5/d746dd3bf5942a29c470aefff9280236"
> [ 23%] Generating
> /usr/local/gate_v7.1/examples/example_TimeActivityCurve/data/NCAT_act_7.bin
> -- Fetching "
> http://midas3.kitware.com/midas/api/rest?method=midas.bitstream.download&checksum=af5b5dbef7a9aa37d1b554d2fab7bdd0&algorithm=MD5
> "
> -- [download 26% complete]
> -- [download 27% complete]
> -- [download 28% complete]
> -- [download 29% complete]
> -- [download 30% complete]
> -- [download 31% complete]
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--
Beien Wang
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