[Gate-users] Gate v7.1 installation on Mac OSX
Pete Z. Wu
pzw at ns.ph.liv.ac.uk
Tue Sep 15 10:20:37 CEST 2015
Hi Uwe,
Thanks for the prompt response to my post. To clarify, I installed
Gate (version 7.1) from source code. The commands used during the
configuration process are as follows:
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_DOWNLOAD_BENCHMARKS_DATA=ON /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_DOWNLOAD_EXAMPLES_DATA=OFF /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_USE_ECAT7=OFF /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_USE_GEANT4_UIVIS=ON /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_USE_GPU=OFF /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_USE_LMF=OFF /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_USE_OPTICAL=OFF /usr/local/gate_v7.1
cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gate_v7.1-install
-DGATE_USE_SYSTEM_CLHEP=OFF /usr/local/gate_v7.1
After setting up all the flags as shown i.e USE_GPU=OFF etc. I ran
the “make –j4” command and “make install” command in sequence as shown
below. I did not get any error messages during these two stages either.
make -j4
make install
Now, as I understand if these two stages are successful (as it appears
to be in my case) the installation should be OK. However, when I try
to run Gate from the terminal I get an error message. I should be
grateful if you could confirm to me that the procedure I have listed
above in this email is correct. I should also mention that both ROOT
and GEANT4 are working on my macbook.
Many thanks,
Pete
Quoting "Pietrzyk, Uwe" <u.pietrzyk at fz-juelich.de>:
> Hi Pete,
>
> nit sure, whether I understood your question correctly, but the following
> lines I copied from a terminal window may be helpful for you:
>
> medmac23 1 --> cd /Applications/gate_v7.1-install/bin
> medmac23 2 --> ll
> total 15368
> -rwxr-xr-x 1 upietrzyk admin 7860824 May 8 14:23 Gate*
> -rwxr-xr-x@ 1 upietrzyk admin 113 May 8 14:37 env_gate.csh*
>
> medmac23 3 --> pwd
> /Applications/gate_v7.1-install/bin
>
> medmac23 4 --> more env_gate.csh
> source /Applications/geant4.10.01-install/bin/geant4.csh
> setenv PATH ${PATH}:/Applications/gate_v7.1-install/bin
> medmac23 5 -->
>
> medmac23 5 --> source env_gate.csh
>
> medmac23 8 --> which Gate
> ./Gate
>
> medmac23 7 --> Gate
> [G4]
> [G4] *************************************************************
> [G4] Geant4 version Name: geant4-10-01 (5-December-2014)
> [G4] Copyright : Geant4 Collaboration
> [G4] Reference : NIM A 506 (2003), 250-303
> [G4] WWW : http://cern.ch/geant4
> [G4] *************************************************************
> [G4]
> [Core-0] Initialization of geometry
> [Core-0] Initialization of physics
> [Core-0] Initialization of actors
> [Core-0]
> [Core-0]
> **********************************************************************
> [Core-0] GATE version name: gate_v7.1
> [Core-0] Copyright : OpenGATE Collaboration
> [Core-0] Reference : Phys. Med. Biol. 49 (2004) 4543-4561
> [Core-0] Reference : Phys. Med. Biol. 56 (2011) 881-901
> [Core-0] WWW : http://www.opengatecollaboration.org
> [Core-0]
> **********************************************************************
> [Core-0]
> [Core-0] You are using Geant4 version 10.1.0
> Idle> exit
> Graphics systems deleted.
> Visualization Manager deleting...
>
>
> Kind regards and best wishes,
>
> Uwe Pietrzyk
>
> /----------------------------------------------------------------------
> Prof. Dr. Uwe Pietrzyk
> Diplom-Physiker
> Institut für Neurowissenschaften und Medizin / INM-4
> Forschungszentrum Jülich GmbH
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> ----------------------------------------------------------------------/
>
> On 15 Sep 2015, at 08:06, Pete Z. Wu
> <pzw at ns.ph.liv.ac.uk<mailto:pzw at ns.ph.liv.ac.uk>> wrote:
>
> Dear GATE expert,
>
> I’m new to GATE. I recently installed gate_v7.1 on my MacBook Pro.
> During the configuration, building and installation stages I did not
> get any error messages, everything seams to be done quite smoothly.
> After the installation was completed I needed to write the source
> script i.e. .sh file into my .bashrc file. However, I’m not sure
> where this file should be. It does not appear to be in either the
> installation or build directories i.e. gate_v7.1-build or
> gate_v7.1-install.
>
> I should be very grateful if you would let me know explicitly how I
> should source the .sh script in my .bashrc file.
>
> Many thanks,
> Pete
>
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