[Gate-users] Installation of Gate 7.1 - error during linking

David Boersma david.boersma at physics.uu.se
Fri Oct 9 19:39:48 CEST 2015


Hi Paweł,

How did you install ROOT? What operating system are you on?
What version is your compiler (output of gcc --version)?

/David

Den 09/10/2015 kl. 15:06, skrev Paweł Kowalski:
> Sorry for SPAM. In previous message I have forgotten to add versions of
> Root and Geant4:
>
> Root - 5.34-x86_64-gcc46-python27
> Geant4 - 4.10.01.p02-gcc46
>
> Best regards,
> PK
>
> 2015-10-09 14:55 GMT+02:00 Paweł Kowalski <flukson at gmail.com
> <mailto:flukson at gmail.com>>:
>
>     Hello,
>
>     I would like to install Gate v 7.1. Version of Root is
>
>     During installation of Gate I only set two variables: INSTALL_PREFIX
>     and I switch on optical photons.
>
>     After compilation of Gate, I get error during linking (there are
>     also some warnings during compilation):
>
>     /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
>     undefined reference to
>     `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15'
>     /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
>     undefined reference to
>     `std::__detail::_List_node_base::swap(std::__detail::_List_node_base&,
>     std::__detail::_List_node_base&)@GLIBCXX_3.4.15'
>     /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
>     undefined reference to
>     `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*,
>     std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
>     /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
>     undefined reference to
>     `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
>     collect2: ld returned 1 exit status
>     make[2]: *** [Gate] Error 1
>     make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
>     make: *** [all] Error 2
>
>     Did anyone have similar problem? What may be the solution?
>
>     Best regards,
>     Paweł Kowalski
>
>
>
>
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