[Gate-users] TLE/seTLE Dose actors compatible with a linear motion of source ?
Francois Smekens
fsmekens at gmail.com
Tue May 19 19:46:32 CEST 2015
Hi Pierre,
I can confirm you that the TLE and seTLE are compatible with a multiple run
simulation. Concerning the linear source, I only tested the
"placementsFile" system.
In this system, you have to specify a list of placements for each time
slice that will be applied to the attached volume.
I suggest you to try this solution using TLE and seTLE in separate
simulations. You will find practical details about the placementsFile here:
http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.1:Defining_a_geometry#Moving_a_volume
(Generic move section)
If the bug persists, we will probably need more informations about your
macro files (type of source, physicsList, ...)
Best regards,
François
2015-05-18 15:54 GMT+02:00 Pierre Tb <pierre.tb57 at gmail.com>:
> Dear collaborators,
>
> After installing Geant4 10.01 and Gate7.1 on my machine, I would test TLE
> (Track Length Estimator) and seTLE (Split Exponential TLE) dose actors to
> win calculation time.
> (
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.1:Readout_parameters_for_Radiotherapy_applications:_Actors#TLE_and_seTLE_.28Track_Length_Estimator.29
> )
>
> But I noted that there is a problem *after one run of simulation*, which
> produced a break segmentation violation (see below)
>
> I would estimate *organ dose on voxelized phantom with a linear motion of
> the source along the body.*
>
> For the moving source, I attached it to a support , which moved with these
> instructions :
> /gate/support/moves/insert translation
> /gate/support/translation/setSpeed 0 0 70 mm/s
>
> and I started the acquisition with :
>
> ### STARTING Simulation #####################
> /gate/random/setEngineName MersenneTwister
> /gate/random/setEngineSeed auto
> /gate/application/setTimeSlice 0.0208 s
> /gate/application/setTimeStart 0. s
> /gate/application/setTimeStop 6.234 s
> /gate/application/startDAQ
>
> Do you think TLE and seTLE are compatible with a linear motion and with a
> acquisition run by run ? I tried a simulation with a fixed source, it works
> !
> Is the problem coming from the installation of the new release of
> Geant4/Gate ?
>
> Thank you for your help.
>
> Best regards,
>
> Pierre THEVENARD-BERGER
>
>
> *Bug report* :
>
> ### === G4UAtomicDeexcitation::InitialiseForNewRun()
> ### === PIXE model for hadrons: Empirical 1
> ### === PIXE model for e+-: Livermore 1
>
> *** Break *** segmentation violation
>
> ===========================================================
> There was a crash.
> This is the entire stack trace of all threads:
> ===========================================================
> #0 0x00007f158c212c8e in waitpid () from /lib/x86_64-linux-gnu/libc.so.6
> #1 0x00007f158c19829e in ?? () from /lib/x86_64-linux-gnu/libc.so.6
> #2 0x00007f158ee6b7d7 in TUnixSystem::StackTrace() () from
> /home/osboxes/Progs/root_v5.34/lib/libCore.so
> #3 0x00007f158ee6e133 in TUnixSystem::DispatchSignals(ESignals) () from
> /home/osboxes/Progs/root_v5.34/lib/libCore.so
> #4 <signal handler called>
> #5 0x00007f1590a2e6d7 in G4ParticleChange::Initialize(G4Track const&) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4track.so
> #6 0x00007f1591c5ec25 in G4UserSpecialCuts::PostStepDoIt(G4Track const&,
> G4Step const&) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4processes.so
> #7 0x0000000000760275 in
> GateSETLEMultiplicityActor::UserSteppingAction(GateVVolume const*, G4Step
> const*) ()
> #8 0x00000000006e090f in GateActorManager::UserSteppingAction(G4Step
> const*) ()
> #9 0x00000000006a33e1 in GateSteppingAction::UserSteppingAction(G4Step
> const*) ()
> #10 0x00007f15926f7a09 in G4SteppingManager::Stepping() () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4tracking.so
> #11 0x00007f15927018f4 in G4TrackingManager::ProcessOneTrack(G4Track*) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4tracking.so
> #12 0x00007f15929362a7 in G4EventManager::DoProcessing(G4Event*) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4event.so
> #13 0x00007f1592bbdfc7 in G4RunManager::ProcessOneEvent(int) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4run.so
> #14 0x00007f1592bbc8d5 in G4RunManager::DoEventLoop(int, char const*, int)
> () from /home/osboxes/Progs/geant4.10.01-install/lib/libG4run.so
> #15 0x00007f1592bbc66c in G4RunManager::BeamOn(int, char const*, int) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4run.so
> #16 0x00000000008da3b0 in GateApplicationMgr::StartDAQ() ()
> #17 0x00000000009226b8 in
> GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) ()
> #18 0x00007f158fb10d3d in G4UIcommand::DoIt(G4String) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #19 0x00007f158fb28486 in G4UImanager::ApplyCommand(char const*) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #20 0x00007f158fb02ea7 in G4UIbatch::ExecCommand(G4String const&) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #21 0x00007f158fb042ab in G4UIbatch::SessionStart() () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #22 0x00007f158fb23263 in G4UImanager::ExecuteMacroFile(char const*) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #23 0x00007f158fb1bac3 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
> G4String) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #24 0x00007f158fb10d3d in G4UIcommand::DoIt(G4String) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #25 0x00007f158fb28486 in G4UImanager::ApplyCommand(char const*) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #26 0x00007f159335424c in G4UIterminal::ExecuteCommand(G4String const&) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4interfaces.so
> #27 0x00007f159335581c in G4UIterminal::SessionStart() () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4interfaces.so
> #28 0x00000000004eed78 in main ()
> ===========================================================
>
>
> The lines below might hint at the cause of the crash.
> If they do not help you then please submit a bug report at
> http://root.cern.ch/bugs. Please post the ENTIRE stack trace
> from above as an attachment in addition to anything else
> that might help us fixing this issue.
> ===========================================================
> #5 0x00007f1590a2e6d7 in G4ParticleChange::Initialize(G4Track const&) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4track.so
> #6 0x00007f1591c5ec25 in G4UserSpecialCuts::PostStepDoIt(G4Track const&,
> G4Step const&) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4processes.so
> #7 0x0000000000760275 in
> GateSETLEMultiplicityActor::UserSteppingAction(GateVVolume const*, G4Step
> const*) ()
> #8 0x00000000006e090f in GateActorManager::UserSteppingAction(G4Step
> const*) ()
> #9 0x00000000006a33e1 in GateSteppingAction::UserSteppingAction(G4Step
> const*) ()
> #10 0x00007f15926f7a09 in G4SteppingManager::Stepping() () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4tracking.so
> #11 0x00007f15927018f4 in G4TrackingManager::ProcessOneTrack(G4Track*) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4tracking.so
> #12 0x00007f15929362a7 in G4EventManager::DoProcessing(G4Event*) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4event.so
> #13 0x00007f1592bbdfc7 in G4RunManager::ProcessOneEvent(int) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4run.so
> #14 0x00007f1592bbc8d5 in G4RunManager::DoEventLoop(int, char const*, int)
> () from /home/osboxes/Progs/geant4.10.01-install/lib/libG4run.so
> #15 0x00007f1592bbc66c in G4RunManager::BeamOn(int, char const*, int) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4run.so
> #16 0x00000000008da3b0 in GateApplicationMgr::StartDAQ() ()
> #17 0x00000000009226b8 in
> GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) ()
> #18 0x00007f158fb10d3d in G4UIcommand::DoIt(G4String) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #19 0x00007f158fb28486 in G4UImanager::ApplyCommand(char const*) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #20 0x00007f158fb02ea7 in G4UIbatch::ExecCommand(G4String const&) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #21 0x00007f158fb042ab in G4UIbatch::SessionStart() () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #22 0x00007f158fb23263 in G4UImanager::ExecuteMacroFile(char const*) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #23 0x00007f158fb1bac3 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
> G4String) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #24 0x00007f158fb10d3d in G4UIcommand::DoIt(G4String) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #25 0x00007f158fb28486 in G4UImanager::ApplyCommand(char const*) () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4intercoms.so
> #26 0x00007f159335424c in G4UIterminal::ExecuteCommand(G4String const&) ()
> from /home/osboxes/Progs/geant4.10.01-install/lib/libG4interfaces.so
> #27 0x00007f159335581c in G4UIterminal::SessionStart() () from
> /home/osboxes/Progs/geant4.10.01-install/lib/libG4interfaces.so
> #28 0x00000000004eed78 in main ()
> ===========================================================
>
> Segmentation fault (core dumped)
>
>
>
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