[Gate-users] benchPET segmentation fault
LORENA VAZQUEZ CANELAS
lorena.vazquez at usal.es
Fri Mar 27 13:33:20 CET 2015
Hi all,
It may be viewer that you're using or you can some “#” in startDAQ or you
have wrong written the “setMaterialDatabase”. You can probe it to see
happens.
2015-03-27 13:32 GMT+01:00 LORENA VAZQUEZ CANELAS <lorena.vazquez at usal.es>:
> Hi all,
>
> It may be viewer that you're using or you can some “#” or you have wrong
> written the “setMaterialDatabase”. You can probe it to see happens.
>
>
>
> 2015-03-27 13:23 GMT+01:00 Patay Gergely <patay.gergely at mediso.hu>:
>
>> Hi,
>>
>> in short: comment out the
>>
>> /gate/random/verbose 1
>>
>> line in the benchPET.mac file.
>> For a more detailed explanation please read the discussion in mailing
>> list archive (http://lists.opengatecollaboration.org/
>> mailman/private/gate-users/2014-September/007725.html)
>>
>> best regards,
>> Gergely
>>
>>
>>
>> On 2015-03-27 13:12, imen elhamrouni wrote:
>>
>>> Hi again,
>>>
>>> Sorry for my insistence, i launched the benchPET example from gate but i
>>> have a
>>> segmentation fault problem as you can see below , i wonder if anyone
>>> have an idea
>>>
>>> *** Break *** segmentation violation
>>>
>>>
>>>
>>> ===========================================================
>>> There was a crash (#8 0xb50bb93b in SigHandler(ESignals) () from
>>> /home/imen/root/lib/libCore.so).
>>> This is the entire stack trace of all threads:
>>> ===========================================================
>>>
>>> Thread 4 (Thread 0xaf666b40 (LWP 5251)):
>>> #0 0xb771f424 in __kernel_vsyscall ()
>>> #1 0xb3eab7ab in poll () at ../sysdeps/unix/syscall-template.S:81
>>> #2 0xb207620b in g_poll () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #3 0xb20673e8 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #4 0xb2067528 in g_main_context_iteration () from
>>> /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #5 0xaf71c670 in ?? () from /usr/lib/i386-linux-gnu/gio/
>>> modules/libdconfsettings.so
>>> #6 0xb208d9aa in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #7 0xb3f84f70 in start_thread (arg=0xaf666b40) at pthread_create.c:312
>>> #8 0xb3eba70e in clone () at ../sysdeps/unix/sysv/linux/
>>> i386/clone.S:129
>>>
>>> Thread 3 (Thread 0xaecffb40 (LWP 5252)):
>>> #0 0xb771f424 in __kernel_vsyscall ()
>>> #1 0xb3eab7ab in poll () at ../sysdeps/unix/syscall-template.S:81
>>> #2 0xb207620b in g_poll () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #3 0xb20673e8 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #4 0xb206776b in g_main_loop_run () from /lib/i386-linux-gnu/libglib-2.
>>> 0.so.0
>>> #5 0xb00d936a in ?? () from /usr/lib/i386-linux-gnu/libgio-2.0.so.0
>>> #6 0xb208d9aa in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #7 0xb3f84f70 in start_thread (arg=0xaecffb40) at pthread_create.c:312
>>> #8 0xb3eba70e in clone () at ../sysdeps/unix/sysv/linux/
>>> i386/clone.S:129
>>>
>>> Thread 2 (Thread 0xadec3b40 (LWP 5253)):
>>> #0 0xb771f424 in __kernel_vsyscall ()
>>> #1 0xb3eab7ab in poll () at ../sysdeps/unix/syscall-template.S:81
>>> #2 0xb207620b in g_poll () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #3 0xb20673e8 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #4 0xb2067528 in g_main_context_iteration () from
>>> /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #5 0xb206757e in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #6 0xb208d9aa in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #7 0xb3f84f70 in start_thread (arg=0xadec3b40) at pthread_create.c:312
>>> #8 0xb3eba70e in clone () at ../sysdeps/unix/sysv/linux/
>>> i386/clone.S:129
>>>
>>> Thread 1 (Thread 0xb1f49000 (LWP 5250)):
>>> #0 0xb771f424 in __kernel_vsyscall ()
>>> #1 0xb3e83e7b in waitpid () at ../sysdeps/unix/syscall-template.S:81
>>> #2 0xb3e0dfcd in do_system (line=line
>>> entry=0xa9dcc70 "/home/imen/root/etc/gdb-backtrace.sh 5250 1>&2") at
>>> ../sysdeps/posix/system.c:148
>>> #3 0xb3e0e3d0 in __libc_system (line=line
>>> entry=0xa9dcc70 "/home/imen/root/etc/gdb-backtrace.sh 5250 1>&2") at
>>> ../sysdeps/posix/system.c:184
>>> #4 0xb3f8d10b in system (line=0xa9dcc70 "/home/imen/root/etc/gdb-
>>> backtrace.sh
>>> 5250 1>&2") at pt-system.c:28
>>> #5 0xb50b5a3b in TUnixSystem::Exec(char const*) () from
>>> /home/imen/root/lib/libCore.so
>>> #6 0xb50b9742 in TUnixSystem::StackTrace() () from
>>> /home/imen/root/lib/libCore.so
>>> #7 0xb50bb807 in TUnixSystem::DispatchSignals(ESignals) () from
>>> /home/imen/root/lib/libCore.so
>>> #8 0xb50bb93b in SigHandler(ESignals) () from
>>> /home/imen/root/lib/libCore.so
>>> #9 0xb50b4912 in sighandler(int) () from /home/imen/root/lib/libCore.so
>>> #10 <signal handler called>
>>> #11 0xb56598d6 in CLHEP::MTwistEngine::showStatus() const () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4clhep.so
>>> #12 0x08478693 in GateApplicationMgr::StartDAQ() ()
>>> #13 0x0847e620 in GateApplicationMgrMessenger::SetNewValue(G4UIcommand*,
>>> G4String) ()
>>> #14 0xb570d8f6 in G4UIcommand::DoIt(G4String) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #15 0xb57246b7 in G4UImanager::ApplyCommand(char const*) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #16 0xb5724d65 in G4UImanager::ApplyCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #17 0xb56fc797 in G4UIbatch::ExecCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #18 0xb56fdc7c in G4UIbatch::SessionStart() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #19 0xb57208b5 in G4UImanager::ExecuteMacroFile(char const*) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #20 0xb5717bf2 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
>>> G4String) ()
>>> from /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #21 0xb570d8f6 in G4UIcommand::DoIt(G4String) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #22 0xb57246b7 in G4UImanager::ApplyCommand(char const*) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #23 0xb5724d65 in G4UImanager::ApplyCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #24 0xb73e85ca in G4VBasicShell::ExecuteCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #25 0xb73ed12e in G4VBasicShell::ApplyShellCommand(G4String const&,
>>> bool&,
>>> bool&) () from /home/imen/geant4.9.6/geant4-
>>> install/lib/libG4interfaces.so
>>> #26 0xb73dc3ce in G4UIQt::CommandEnteredCallback() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #27 0xb73e4800 in G4UIQt::qt_static_metacall(QObject*,
>>> QMetaObject::Call, int,
>>> void**) [clone .part.0] () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #28 0xb2ee40f7 in QMetaObject::activate(QObject*, QMetaObject const*,
>>> int,
>>> void**) () from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #29 0xb35e8075 in QLineEdit::returnPressed() () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #30 0xb35e84bc in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #31 0xb2ee40f7 in QMetaObject::activate(QObject*, QMetaObject const*,
>>> int,
>>> void**) () from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #32 0xb3877e45 in QLineControl::accepted() () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #33 0xb35efc9f in QLineControl::processKeyEvent(QKeyEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #34 0xb35e402f in QLineEdit::keyPressEvent(QKeyEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #35 0xb31d1252 in QWidget::event(QEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #36 0xb35e9f0a in QLineEdit::event(QEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #37 0xb31777f4 in QApplicationPrivate::notify_helper(QObject*, QEvent*)
>>> () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #38 0xb317fb65 in QApplication::notify(QObject*, QEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #39 0xb2ecee4a in QCoreApplication::notifyInternal(QObject*, QEvent*)
>>> () from
>>> /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #40 0xb3175c7d in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #41 0xb3229829 in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #42 0xb3229c18 in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #43 0xb31ffda5 in QApplication::x11ProcessEvent(_XEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #44 0xb322c524 in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #45 0xb20671e3 in g_main_context_dispatch () from
>>> /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #46 0xb2067468 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #47 0xb2067528 in g_main_context_iteration () from
>>> /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #48 0xb2efe93b in
>>> QEventDispatcherGlib::processEvents(QFlags<
>>> QEventLoop::ProcessEventsFlag>) ()
>>> from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #49 0xb322c5de in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #50 0xb2ecd823 in
>>> QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from
>>> /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #51 0xb2ecdb49 in QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
>>> ()
>>> from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #52 0xb2ed38fe in QCoreApplication::exec() () from
>>> /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #53 0xb3175a24 in QApplication::exec() () from /usr/lib/i386-linux-gnu/
>>> libQtGui.so.4
>>> #54 0xb73cf388 in G4UIQt::SessionStart() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #55 0xb73c0972 in G4UIExecutive::SessionStart() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #56 0x08112b14 in main ()
>>> ===========================================================
>>>
>>>
>>> The lines below might hint at the cause of the crash.
>>> If they do not help you then please submit a bug report at
>>> http://root.cern.ch/bugs. Please post the ENTIRE stack trace
>>> from above as an attachment in addition to anything else
>>> that might help us fixing this issue.
>>> ===========================================================
>>> #11 0xb56598d6 in CLHEP::MTwistEngine::showStatus() const () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4clhep.so
>>> #12 0x08478693 in GateApplicationMgr::StartDAQ() ()
>>> #13 0x0847e620 in GateApplicationMgrMessenger::SetNewValue(G4UIcommand*,
>>> G4String) ()
>>> #14 0xb570d8f6 in G4UIcommand::DoIt(G4String) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #15 0xb57246b7 in G4UImanager::ApplyCommand(char const*) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #16 0xb5724d65 in G4UImanager::ApplyCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #17 0xb56fc797 in G4UIbatch::ExecCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #18 0xb56fdc7c in G4UIbatch::SessionStart() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #19 0xb57208b5 in G4UImanager::ExecuteMacroFile(char const*) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #20 0xb5717bf2 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
>>> G4String) ()
>>> from /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #21 0xb570d8f6 in G4UIcommand::DoIt(G4String) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #22 0xb57246b7 in G4UImanager::ApplyCommand(char const*) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #23 0xb5724d65 in G4UImanager::ApplyCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4intercoms.so
>>> #24 0xb73e85ca in G4VBasicShell::ExecuteCommand(G4String const&) () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #25 0xb73ed12e in G4VBasicShell::ApplyShellCommand(G4String const&,
>>> bool&,
>>> bool&) () from /home/imen/geant4.9.6/geant4-
>>> install/lib/libG4interfaces.so
>>> #26 0xb73dc3ce in G4UIQt::CommandEnteredCallback() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #27 0xb73e4800 in G4UIQt::qt_static_metacall(QObject*,
>>> QMetaObject::Call, int,
>>> void**) [clone .part.0] () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #28 0xb2ee40f7 in QMetaObject::activate(QObject*, QMetaObject const*,
>>> int,
>>> void**) () from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #29 0xb35e8075 in QLineEdit::returnPressed() () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #30 0xb35e84bc in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #31 0xb2ee40f7 in QMetaObject::activate(QObject*, QMetaObject const*,
>>> int,
>>> void**) () from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #32 0xb3877e45 in QLineControl::accepted() () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #33 0xb35efc9f in QLineControl::processKeyEvent(QKeyEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #34 0xb35e402f in QLineEdit::keyPressEvent(QKeyEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #35 0xb31d1252 in QWidget::event(QEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #36 0xb35e9f0a in QLineEdit::event(QEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #37 0xb31777f4 in QApplicationPrivate::notify_helper(QObject*, QEvent*)
>>> () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #38 0xb317fb65 in QApplication::notify(QObject*, QEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #39 0xb2ecee4a in QCoreApplication::notifyInternal(QObject*, QEvent*)
>>> () from
>>> /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #40 0xb3175c7d in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #41 0xb3229829 in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #42 0xb3229c18 in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #43 0xb31ffda5 in QApplication::x11ProcessEvent(_XEvent*) () from
>>> /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #44 0xb322c524 in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #45 0xb20671e3 in g_main_context_dispatch () from
>>> /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #46 0xb2067468 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #47 0xb2067528 in g_main_context_iteration () from
>>> /lib/i386-linux-gnu/libglib-2.0.so.0
>>> #48 0xb2efe93b in
>>> QEventDispatcherGlib::processEvents(QFlags<
>>> QEventLoop::ProcessEventsFlag>) ()
>>> from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #49 0xb322c5de in ?? () from /usr/lib/i386-linux-gnu/libQtGui.so.4
>>> #50 0xb2ecd823 in
>>> QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from
>>> /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #51 0xb2ecdb49 in QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
>>> ()
>>> from /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #52 0xb2ed38fe in QCoreApplication::exec() () from
>>> /usr/lib/i386-linux-gnu/libQtCore.so.4
>>> #53 0xb3175a24 in QApplication::exec() () from /usr/lib/i386-linux-gnu/
>>> libQtGui.so.4
>>> #54 0xb73cf388 in G4UIQt::SessionStart() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #55 0xb73c0972 in G4UIExecutive::SessionStart() () from
>>> /home/imen/geant4.9.6/geant4-install/lib/libG4interfaces.so
>>> #56 0x08112b14 in main ()
>>> ===========================================================
>>>
>>>
>>> Segmentation fault (core dumped)
>>>
>>> thanks!
>>> Best Regards,
>>> Imen
>>>
>>> ᐧ
>>>
>>>
>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>
>>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>
>
>
> --
>
> LORENA VÁZQUEZ CANELAS
> PhD student
> LRI - Datación (Despacho Técnicos)
> Calle Espejo, s/n, 37008 - Salamanca (Spain)
> TEL: +34 923 294930 ext:4932 email: lorena.vazquez at usal.es
> web: http://campus.usal.es/~lri/
>
>
--
LORENA VÁZQUEZ CANELAS
PhD student
LRI - Datación (Despacho Técnicos)
Calle Espejo, s/n, 37008 - Salamanca (Spain)
TEL: +34 923 294930 ext:4932 email: lorena.vazquez at usal.es
web: http://campus.usal.es/~lri/
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