[Gate-users] Problem with job splitter installation

[Alex Vergara Gil]

simply substitute the line
srand(time(NULL)*getpid());

by the line
srand(time(NULL)/**getpid()*/);

but there is an issue too with condor, that doesn't get environment
variables, so it doesn't know where geant4 installation is.

regards
alex

2015-01-21 8:29 GMT-05:00, André Miguel Monteiro <ammonteiro at fc.ul.pt>:
> Dear Hermann, Soman and all Gate users,
>
>
> I am having the same problem as you Soman.
>
>
> Compiling gjs.cc...
> Compiling GateMacfileParser.cc...
> ./src/GateMacfileParser.cc: In constructor
> ‘GateMacfileParser::GateMacfileParser(G4String, G4int, G4int, G4String*)’:
> ./src/GateMacfileParser.cc:41:26: error: ‘getpid’ was not declared in this
> scope
>   srand(time(NULL)*getpid());
>                           ^
> make: *** [tmp/GateMacfileParser.o] Error 1
>
>
> As you did I add the variables to my ~/.bashrc file:
>
>
> export GC_DOT_GATE_DIR=/home/andre/workdir/
>
> export
> GC_GATE_EXE_DIR=/home/andre/programs/Gate/opt/simulation/gate.7.0-install/bin
>
> I set these paths, because in other machine I have Gate v.6.1 installed with
> cluster tools that point GC_DOT_GATE_DIR to a work directory and
> GC_GATE_EXE_DIR where is present the Gate executable.
>
> Does anyone know how to solve this problem?
>
> Thank you.
>
> Cheers,
>
> André
>
>
>
> --------------------------------
> MSc Student in Biomedical and Biophysics Engineering at Faculty of Sciences
> of the University of Lisbon
>
> Institute of Biophysics and Biomedical Engineering
> Faculty of Sciences, University of Lisbon
> Campo Grande
> 1749-016 Lisbon
>
> Room Office: 1.02
> Extension: 20509
> Email: ammonteiro at fc.ul.pt
> LinkedIn Profile: http://linkedin.com/in/andremmonteiro
> Website: http://www.ibeb.fc.ul.pt/
> ________________________________
> From: gate-users-bounces at lists.opengatecollaboration.org
> <gate-users-bounces at lists.opengatecollaboration.org> on behalf of S.
> Saghamanesh <s.saghamanesh at yahoo.com>
> Sent: Saturday, December 20, 2014 2:02 PM
> To: Hermann Fuchs; gate-users at lists.opengatecollaboration.org
> Subject: Re: [Gate-users] Problem with job splitter installation
>
> Dear Hermann,
>
> Thanks for your note. My problem is that my system can't find the
> "env_gate.sh". I even don't have a cmake file in the "job splitter"
> directory to compile.
> Based on the directions in Gate manual, I should add two environment
> variables in my ".bashrc" file as below, am I right?
>
> export GC_DOT_GATE_DIR=/somedir/  >>  (I set it to
> /home/soman/Gate/gate_v7/cluster_tools/jobsplitter)
> export GC_GATE_EXE_DIR=/somedir/bin/Linux-g++/   >> (I set it to
> /home/soman/Gate/gate_v7/cluster_tools/jobsplitter)
>
> However, when I go into above path in a terminal and write source
> env_gate.sh, my system can't find env_gate.sh. I don't know what's the
> problem. Thanks for any idea of yours and also ideas of other users, if any,
> on this.
> - Soman
>
>
> On Tuesday, December 16, 2014 2:25 PM, Hermann Fuchs
> <hermann.fuchs at meduniwien.ac.at> wrote:
>
>
> Hi,
>
> at our place the following procedure worked on Scientific Linux 6 and Ubuntu
> 14.04 LTS.
>
> go to /opt/simulation/gate6_1/cluster_tools/jobsplitter
>
> cd /opt/simulation/gate6_1/cluster_tools/jobsplitter
>
>
> make sure Gate paths are set
>
> source /opt/simulation/gate6_1/env_gate.sh
>
>
> compile
>
> make
>
>
> Copy the library to the correct place
>
> cp
> /opt/simulation/gate6_1/cluster_tools/jobsplitter/tmp/Linux-g++/gjs/libgjs.so
> /opt/simulation/gate6_1/cluster_tools/jobsplitter/bin/Linux-g++
>
>
> export
> LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/simulation/gate6_1/cluster_tools/jobsplitter/tmp/Linux-g++/gjs
>
> Cheers,
> Hermann
>
> On Wed, 2014-12-10 at 14:08 +0000, S. Saghamanesh wrote:
> Hi,
>
>
> I get this error when I try to make job splitter in its directory:
>
>
> Compiling GateMacfileParser.cc...
> ./src/GateMacfileParser.cc: In constructor
> ‘GateMacfileParser::GateMacfileParser(G4String, G4int, G4int, G4String*)’:
> ./src/GateMacfileParser.cc:41:26: error: ‘getpid’ was not declared in this
> scope
> make: *** [tmp/GateMacfileParser.o] Error 1
>
>
>
> What is it about? Does anybody know what's the procedure of installing job
> splitter?
>
>
> Thanks
> - Soman
>
>
>
>
>
> _______________________________________________
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>
>
> --
>
> -------------
> DI Hermann Fuchs
> Christian Doppler Laboratory for Medical Radiation Research for Radiation
> Oncology
> Department of Radiation Oncology
> Medical University Vienna
> Währinger Gürtel 18-20
> A-1090 Wien
>
> Tel.  + 43 / 1 / 40 400 72710
> Mail. hermann.fuchs at meduniwien.ac.at
>
>
>
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