[Gate-users] Help on Gate7 segmentation

[Ali Faiez Taha]

After compiled and install the programs described in
(http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV7.0)
 and when execute the Gate, I have the follow erros.

$> Gate princ05_.mac

I am using Rocks Cluster Linux
Kernel :  2.6.32-431.5.1.el6.x86_64 #1 SMP Wed Feb 12 00:41:43 UTC 2014
x86_64 x86_64 x86_64 GNU/Linux

How can I solve this problem ?
Thanks a lot.

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[G4]
[G4] *************************************************************
[G4]  Geant4 version Name: geant4-09-06-patch-03    (14-March-2014)
[G4]                       Copyright : Geant4 Collaboration
[G4]                       Reference : NIM A 506 (2003), 250-303
[G4]                             WWW : http://cern.ch/geant4
[G4] *************************************************************
[G4]
[Core-0] Initialization of geometry
[Core-0] Initialization of physics
[Physic-0] WARNING: manual physic lists are being deprecated.
Please, use physic list builder mechanism instead. Related documentation
can be found at:
http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics
[Core-0] Initialization of actors
[Core-0]
[Core-0]
**********************************************************************
[Core-0]  GATE version name: gate_v7.0

[Core-0]                     Copyright : OpenGATE Collaboration

[Core-0]                     Reference : Phys. Med. Biol. 49 (2004)
4543-4561
[Core-0]                     Reference : Phys. Med. Biol. 56 (2011)
881-901
[Core-0]                     WWW : http://www.opengatecollaboration.org

[Core-0]
**********************************************************************
[Core-0]
[Core-0] You are using Geant4 version 9.6.3
[Core-0] Starting macro princ05_.mac
 CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector
===== XML PATH ====: ./Materials.xml

 *** Break *** segmentation violation


===========================================================
There was a crash.
This is the entire stack trace of all threads:
===========================================================
#0  0x0000003fbdeabf9e in waitpid () from /lib64/libc.so.6
#1  0x0000003fbde3e899 in do_system () from /lib64/libc.so.6
#2  0x00007ff2b4fca548 in TUnixSystem::StackTrace() () from
/state/partition1/home/Gate7/Root/root/lib/libCore.so
#3  0x00007ff2b4fc93c3 in TUnixSystem::DispatchSignals(ESignals) () from
/state/partition1/home/Gate7/Root/root/lib/libCore.so
#4  <signal handler called>
#5  0x0000003fbdf28190 in __strncmp_sse42 () from /lib64/libc.so.6
#6  0x0000003fc9e5e465 in __xmlParserInputBufferCreateFilename () from
/usr/lib64/libxml2.so.2
#7  0x0000003fc9e3380d in xmlNewInputFromFile () from
/usr/lib64/libxml2.so.2
#8  0x0000003fc9e37ac6 in xmlCreateURLParserCtxt () from
/usr/lib64/libxml2.so.2
#9  0x0000003fc9e4ea8e in xmlSAXParseFileWithData () from
/usr/lib64/libxml2.so.2
#10 0x00000000007e6af0 in GateXMLDocument::GateXMLDocument(G4String
const&) ()
#11 0x00000000005c4319 in
GateMaterialDatabase::ReadMaterialFromDBFile(G4String const&) ()
#12 0x00000000005c62fb in GateMaterialDatabase::GetMaterial(G4String
const&) ()
#13 0x00000000005ab808 in GateVVolume::DefineOwnMaterials() ()
#14 0x00000000005a77f0 in GateVolumeMessenger::SetNewValue(G4UIcommand*,
G4String) ()
#15 0x00007ff2b58aec2a in G4UIcommand::DoIt(G4String) () from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#16 0x00007ff2b58baa63 in G4UImanager::ApplyCommand(char const*) () from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#17 0x00007ff2b58a0ac7 in G4UIbatch::ExecCommand(G4String const&) ()
from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#18 0x00007ff2b58a1a4b in G4UIbatch::SessionStart() () from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#19 0x00007ff2b58b8cb3 in G4UImanager::ExecuteMacroFile(char const*) ()
from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#20 0x00007ff2b58b538f in
G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#21 0x00007ff2b58aec2a in G4UIcommand::DoIt(G4String) () from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#22 0x00007ff2b58baa63 in G4UImanager::ApplyCommand(char const*) () from
/state/partition1/home/Gate7/geant4.9.6.p03-install/lib64/libG4intercoms.so
#23 0x00000000004eaf78 in main ()
===========================================================


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