[Gate-users] Gate problem and root problem

[Michal Knap]

H
​i,
I'm doing a minigammacamera ​with Gate. I have problem with "materials"?
Why Gate dont see "vacuum"? I have everything in one direction
(/home/mknap/Simulation).






*mknap at mknap-HP:~$ cd Simulationmknap at mknap-HP:~/Simulation$
ls2.1.3.1          gate.7.0-build    geant4.9.6.p03
Minigamma1pointonsourcecollimator  your_file.bashrc~2.1.3.1-build
gate.7.0-install  geant4.9.6.p03-build    root2.1.3.1-install
gate_v7.0         geant4.9.6.p03-install
your_file.bashrcmknap at mknap-HP:~/Simulation$ source your_file.bashrc*

my your_file.bashrc file :





*source /home/mknap/Simulation/root/bin/thisroot.shexport
PATH=$PATH:/home/mknap/Simulation/2.1.3.1/CLHEP/bin
<http://2.1.3.1/CLHEP/bin>export
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/mknap/Simulation/2.1.3.1/CLHEP/lib
<http://2.1.3.1/CLHEP/lib>source
/home/mknap/Simulation/geant4.9.6.p03-install/bin/geant4.shexport
PATH=$PATH:/home/mknap/Simulation/gate.7.0-install/bin*


I can run Gate:


































































*mknap at mknap-HP:~/Simulation$
Gate************************************************************* Geant4
version Name: geant4-09-06-patch-03    (14-March-2014)
Copyright : Geant4 Collaboration                      Reference : NIM A 506
(2003), 250-303                            WWW : http://cern.ch/geant4
<http://cern.ch/geant4>*************************************************************Visualization
Manager instantiating with verbosity "warnings (3)"...Visualization Manager
initialising...Registering graphics systems...You have successfully
registered the following graphics systems.Current available graphics
systems are:  ASCIITree (ATree)  DAWNFILE (DAWNFILE)  G4HepRep (HepRepXML)
G4HepRepFile (HepRepFile)  OpenGLImmediateX (OGLI, OGLIX)  OpenGLStoredX
(OGL, OGLS, OGLSX)  RayTracer (RayTracer)  VRML1FILE (VRML1FILE)  VRML2FILE
(VRML2FILE)  gMocrenFile (gMocrenFile)Registering model factories...You
have successfully registered the following model factories.Registered model
factories:  generic  drawByCharge  drawByParticleID  drawByOriginVolume
drawByAttributeRegistered filter factories:  chargeFilter  particleFilter
originVolumeFilter  attributeFilterYou have successfully registered the
following user vis actions.Run Duration User Vis Actions: noneEnd of Event
User Vis Actions: noneEnd of Run User Vis Actions: noneSome /vis commands
(optionally) take a string to specify colour.Available colours:  black,
blue, brown, cyan, gray, green, grey, magenta, red, white, yellow[Core-0]
Initialization of geometry[Core-0] Initialization of physics[Physic-0]
WARNING: manual physic lists are being deprecated.Please, use physic list
builder mechanism instead. Related documentation can be found
at:http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics
<http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics>[Core-0]
Initialization of actors[Core-0] [Core-0]
**********************************************************************[Core-0]
GATE version name: gate_v7.0
[Core-0]                     Copyright : OpenGATE
Collaboration                [Core-0]                     Reference : Phys.
Med. Biol. 49 (2004) 4543-4561  [Core-0]                     Reference :
Phys. Med. Biol. 56 (2011) 881-901    [Core-0]                     WWW :
http://www.opengatecollaboration.org
<http://www.opengatecollaboration.org>        [Core-0]
**********************************************************************[Core-0]
[Core-0] You are using Geant4 version 9.6.3*
Idle>

and when i try to run script i get this message :


/gate/world/daughters/name SPECThead
/gate/world/daughters/insert box
GateMaterialDatabase.cc (l.131): GateMaterialDatabase: could not find the
definition for material 'Vacuum' in material files
mknap at mknap-HP:~/Simulation$


​What i have wrong? Why Gate doesn't see "Vacuum"?

And another problem with root. I have root 5.34.18.
I/m trying to run root and i cant get gui.

​mknap at mknap-HP:~/Simulation$ root
  *******************************************
  *                                         *
  *        W E L C O M E  to  R O O T       *
  *                                         *
  *   Version   5.34/18     14 March 2014   *
  *                                         *
  *  You are welcome to visit our Web site  *
  *          http://root.cern.ch            *
  *                                         *
  *******************************************

ROOT 5.34/18 (v5-34-18 at v5-34-18, Mar 14 2014, 16:29:50 on linux)

CINT/ROOT C/C++ Interpreter version 5.18.00, July 2, 2010
Type ? for help. Commands must be C++ statements.
Enclose multiple statements between { }.
root [0]

How i can get gui in root?

Thank all in advance

Regards
Michał Knap
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