[Gate-users] Gate v7 installation problem

[Beien Wang]

Dear Smita,

I think we are having different problems, since the located error files are
different (I read you post in the mailing-list). It is possible that you
have a minor modification different files like what I did and the problem
might be solved. I don't know, but good luck!

Best,
Beien


On 8 June 2014 06:37, Tasneem Rahman <Tasneem.Rahman at student.adfa.edu.au>
wrote:

>  Dear Beien,
>
>
>
> Thanks for your help. But it didn’t bring any luck for me. Don’t really
> sure now how to proceed. L
>
>
>
>
>
> Cheers,
>
>
>
> Smita
>
>
>
> *From:* Beien Wang [mailto:benjaminwang91 at gmail.com]
> *Sent:* Saturday, 7 June 2014 6:24 PM
> *To:* Tasneem Rahman
> *Cc:* gate-users at lists.opengatecollaboration.org
>
> *Subject:* Re: [Gate-users] Gate v7 installation problem
>
>
>
> Dear Tasneem,
>
>
>
> Sorry I don't have that file at hand these days. But what I have done is
> quite simple. Just locate the error file: path_to_geant4/
> *geant4/geant4.9.6.p03-install/include/Geant4/G4NeutronHPVector.hh*, and
> locate the error line *403: error: ‘__isnan’ is not a member of ‘std’. *
> Change the error std::isnan(...) to isnan(...). Then the error disappears.
> I have no idea of why this error exists, neither do I have any idea of why
> this way solve the problem without trigger further problem... Good luck!
>
>
>
> Best,
>
> Beien
>
>
>
> On 6 June 2014 15:22, Tasneem Rahman <Tasneem.Rahman at student.adfa.edu.au>
> wrote:
>
> Dear Beien,
>
>
>
> I am having the exact problem. would you mind to send me the link of the error file as you mentioned where I can modify the same?Thanks.
>
>
>
>
>
> Cheers,
>
>
>
> Smita
>
>
>
> -------- Original Message --------
>
> Subject: Re: [Gate-users] Gate v7 installation problem
>
> From: Beien Wang <benjaminwang91 at gmail.com>
>
> Date: Fri, 2014-06-06 22:02
>
> To: "Schnerr R.S. (Roald)" <roald.schnerr at mumc.nl>
>
> CC: gate-users at lists.opengatecollaboration.org
>
>
>
>    Dear Roald,
>
>
>
> Finally I fix it out by modifying the line in the error file. The error is
> 'isnan is not a member of std', and I just change that line from std::isnan
> to isnan. Then the problem was solved. Thank you all!
>
>
>
> Best,
>
> Beien
>
>
>
> On 5 June 2014 15:46, Schnerr R.S. (Roald) <roald.schnerr at mumc.nl> wrote:
>
> Perhaps try it without the -j4 option. So just make. That helped in my
> case. Apparently it suffers from some sort of race condition.
>
> Best wishes,
> Roald
>
>
> > -----Original Message-----
> > From: gate-users-bounces at lists.opengatecollaboration.org [mailto:gate-
> > users-bounces at lists.opengatecollaboration.org] On Behalf Of Beien Wang
> > Sent: donderdag 5 juni 2014 13:52
> > To: gate-users at lists.opengatecollaboration.org
> > Subject: [Gate-users] Gate v7 installation problem
> >
> > Dear gate users,
> >
> >
> > I am struggling to install Gate v7.0 on my Scientific Linux 5.3
> > computer. GEANT4 and CLHEP have been installed successfully (at least I
> > believe so). GATE is also successfully configured by cmake. But when I
> > manage to follow the instruction and use make -j4 to install it, the
> > error below occurs. Can any one help me with it? Thanks!
> >
> >
> > Best,
> >
> > Beien
> >
> >
> > The problem after make -j4
> >
> >
> > Linking CXX static library libITKMetaIO.a [  6%] Built target ITKMetaIO
> > [  6%] [  6%] [  6%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o
> > [  6%] Building CXX object
> > CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o
> > Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o
> > Building CXX object
> > CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o
> > [  6%] Building CXX object
> > CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o
> > /home/wuwei/programs/geant4/geant4.9.6.p03-
> > install/include/Geant4/G4NeutronHPVector.hh: In member function ‘void
> > G4NeutronHPVector::IntegrateAndNormalise()’:
> > /home/wuwei/programs/geant4/geant4.9.6.p03-
> > install/include/Geant4/G4NeutronHPVector.hh:403: error: ‘__isnan’ is
> > not a member of ‘std’
> > [  6%] Building CXX object
> > CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o
> > [  7%] Building CXX object
> > CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o
> > [  7%] Building CXX object
> > CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o
> > /home/wuwei/programs/CLHEP/2.1.3.1-
> > install/include/CLHEP/Units/PhysicalConstants.h: At global scope:
> > /home/wuwei/programs/CLHEP/2.1.3.1-
> > install/include/CLHEP/Units/PhysicalConstants.h:80: warning:
> > ‘CLHEP::electron_charge’ defined but not used
> > /home/wuwei/programs/CLHEP/2.1.3.1-
> > install/include/CLHEP/Random/Randomize.h:68: warning:
> > ‘CLHEP::HepRandomGenActive’ defined but not used
> > make[2]: *** [CMakeFiles/Gate.dir/Gate.cc.o] Error 1
> > make[2]: *** Waiting for unfinished jobs....
> > make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> > make: *** [all] Error 2
> >
> > --
> >
> > Beien Wang
> > Master's student at KTH, Royal Institute of Technology
> > Email: benjaminwang91 at gmail.com
>
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> --
>
> Beien Wang
>
> Master's student at KTH, Royal Institute of Technology
>
> Mobile telephone: +46 720 327 308
>
> Email: benjaminwang91 at gmail.com
>
> Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden
>
>
>
>
>
> --
>
> Beien Wang
>
> Master's student at KTH, Royal Institute of Technology
>
> Mobile telephone: +46 720 327 308
>
> Email: benjaminwang91 at gmail.com
>
> Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden
>



-- 
Beien Wang
Master's student at KTH, Royal Institute of Technology
Mobile telephone: +46 720 327 308
Email: benjaminwang91 at gmail.com
Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden
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