[Gate-users] Gate v7 installation problem

[Beien Wang]

Dear Tasneem,

Sorry I don't have that file at hand these days. But what I have done is
quite simple. Just locate the error file: path_to_geant4/
*geant4/geant4.9.6.p03-install/include/Geant4/G4NeutronHPVector.hh*, and
locate the error line *403: error: ‘__isnan’ is not a member of ‘std’. *Change
the error std::isnan(...) to isnan(...). Then the error disappears. I have
no idea of why this error exists, neither do I have any idea of why this
way solve the problem without trigger further problem... Good luck!

Best,
Beien


On 6 June 2014 15:22, Tasneem Rahman <Tasneem.Rahman at student.adfa.edu.au>
wrote:

>  Dear Beien,
>
> I am having the exact problem. would you mind to send me the link of the error file as you mentioned where I can modify the same?Thanks.
>
>
> Cheers,
>
> Smita
>
> -------- Original Message --------
> Subject: Re: [Gate-users] Gate v7 installation problem
> From: Beien Wang <benjaminwang91 at gmail.com>
> Date: Fri, 2014-06-06 22:02
> To: "Schnerr R.S. (Roald)" <roald.schnerr at mumc.nl>
> CC: gate-users at lists.opengatecollaboration.org
>
>  Dear Roald,
>
>  Finally I fix it out by modifying the line in the error file. The error
> is 'isnan is not a member of std', and I just change that line from
> std::isnan to isnan. Then the problem was solved. Thank you all!
>
>  Best,
> Beien
>
>
> On 5 June 2014 15:46, Schnerr R.S. (Roald) <roald.schnerr at mumc.nl> wrote:
>
>> Perhaps try it without the -j4 option. So just make. That helped in my
>> case. Apparently it suffers from some sort of race condition.
>>
>> Best wishes,
>> Roald
>>
>> > -----Original Message-----
>> > From: gate-users-bounces at lists.opengatecollaboration.org [mailto:gate-
>> > users-bounces at lists.opengatecollaboration.org] On Behalf Of Beien Wang
>> > Sent: donderdag 5 juni 2014 13:52
>> > To: gate-users at lists.opengatecollaboration.org
>> > Subject: [Gate-users] Gate v7 installation problem
>> >
>> > Dear gate users,
>> >
>> >
>> > I am struggling to install Gate v7.0 on my Scientific Linux 5.3
>> > computer. GEANT4 and CLHEP have been installed successfully (at least I
>> > believe so). GATE is also successfully configured by cmake. But when I
>> > manage to follow the instruction and use make -j4 to install it, the
>> > error below occurs. Can any one help me with it? Thanks!
>> >
>> >
>> > Best,
>> >
>> > Beien
>> >
>> >
>> > The problem after make -j4
>> >
>> >
>> > Linking CXX static library libITKMetaIO.a [  6%] Built target ITKMetaIO
>> > [  6%] [  6%] [  6%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o
>> > [  6%] Building CXX object
>> > CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o
>> > Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o
>> > Building CXX object
>> > CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o
>> > [  6%] Building CXX object
>> > CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o
>> > /home/wuwei/programs/geant4/geant4.9.6.p03-
>> > install/include/Geant4/G4NeutronHPVector.hh: In member function ‘void
>> > G4NeutronHPVector::IntegrateAndNormalise()’:
>> > /home/wuwei/programs/geant4/geant4.9.6.p03-
>> > install/include/Geant4/G4NeutronHPVector.hh:403: error: ‘__isnan’ is
>> > not a member of ‘std’
>> > [  6%] Building CXX object
>> > CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o
>> > [  7%] Building CXX object
>> > CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o
>> > [  7%] Building CXX object
>> > CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o
>> > /home/wuwei/programs/CLHEP/2.1.3.1-
>> > install/include/CLHEP/Units/PhysicalConstants.h: At global scope:
>> > /home/wuwei/programs/CLHEP/2.1.3.1-
>> > install/include/CLHEP/Units/PhysicalConstants.h:80: warning:
>> > ‘CLHEP::electron_charge’ defined but not used
>> > /home/wuwei/programs/CLHEP/2.1.3.1-
>> > install/include/CLHEP/Random/Randomize.h:68: warning:
>> > ‘CLHEP::HepRandomGenActive’ defined but not used
>> > make[2]: *** [CMakeFiles/Gate.dir/Gate.cc.o] Error 1
>> > make[2]: *** Waiting for unfinished jobs....
>> > make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
>> > make: *** [all] Error 2
>> >
>> > --
>> >
>> > Beien Wang
>> > Master's student at KTH, Royal Institute of Technology
>> > Email: benjaminwang91 at gmail.com
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>
>
>  --
> Beien Wang
> Master's student at KTH, Royal Institute of Technology
> Mobile telephone: +46 720 327 308
> Email: benjaminwang91 at gmail.com
> Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden
>



-- 
Beien Wang
Master's student at KTH, Royal Institute of Technology
Mobile telephone: +46 720 327 308
Email: benjaminwang91 at gmail.com
Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden
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