[Gate-users] Geant4.9.5.p02 problem with the installation using cmake
Pedro Correia
pmcorreia at ua.pt
Wed Jan 22 00:15:08 CET 2014
Have you tried to change
ROOTCINT_EXECUTABLE /opt/simulations/root/cint/cint/
to
ROOTCINT_EXECUTABLE /opt/simulations/root/bin/rootcint
?
Best regards, Pedro
No dia 21/01/2014, às 22:50, Michal Knap <michal.knap at gmail.com<mailto:michal.knap at gmail.com>> escreveu:
I finally made Geant4 installed but i have problems with Gate.
______________________________________________________________________________________
CMAKE_BACKWARDS_COMPATIBILITY 2.4
CMAKE_BUILD_TYPE Release
CMAKE_INSTALL_PREFIX /usr/local
EXECUTABLE_OUTPUT_PATH
GATE_ANALYSIS_USE_FILE ON
GATE_ANALYSIS_USE_GENERAL ON
GATE_USE_ECAT7 OFF
GATE_USE_LMF OFF
GATE_USE_OPTICAL ON
GATE_USE_OWN_CLHEP ON
GATE_USE_ROOT ON
Geant4_DIR /usr/local/lib/Geant4-9.5.2
LIBRARY_OUTPUT_PATH
ROOTCINT_EXECUTABLE /opt/simulations/root/cint/cint/
WITH_GEANT4_UIVIS ON
ROOTCINT_EXECUTABLE: Path to a program.
Press [enter] to edit option
Press [c] to configure
Press [h] for help Press [q] to quit without generating
Press [t] to toggle advanced mode (Currently Off)
__________________________________________________________________________________________
Root Not found ! Please install Root and make it available in PATH
CMake Error at cmake-modules/FindCLHEP.cmake:183 (file):
file Internal CMake error when trying to open file:
/opt/simulations/2.1.1.0/CLHEP/CLHEP/Units/defs.h<http://2.1.1.0/CLHEP/CLHEP/Units/defs.h> for reading.
Call Stack (most recent call first):
CMakeLists.txt:73 (FIND_PACKAGE)
What path to ROOT sholud i give?
Thanks in advance
Pozdrawiam
Michał Knap
2014/1/21 Michal Knap <michal.knap at gmail.com<mailto:michal.knap at gmail.com>>
Pozdrawiam
Michał Knap
---------- Forwarded message ----------
From: Mojca Miklavec <mojca.miklavec.lists at gmail.com<mailto:mojca.miklavec.lists at gmail.com>>
Date: 2014/1/21
Subject: Re: [Gate-users] Geant4.9.5.p02 problem with the installation using cmake
To: Michal Knap <michal.knap at gmail.com<mailto:michal.knap at gmail.com>>
On Tue, Jan 21, 2014 at 3:28 PM, Michal Knap <michal.knap at gmail.com<mailto:michal.knap at gmail.com>> wrote:
> Yes. This is it. Thanks a lot for Your help.
Hi,
Since I only wrote this off-list, I believe you should also let the
mailing list know how you solved the problem.
Mojca
> Pozdrawiam
> Michał Knap
>
>
> 2014/1/21 Mojca Miklavec <mojca.miklavec.lists at gmail.com<mailto:mojca.miklavec.lists at gmail.com>>
>>
>> What exactly did you set for CMAKE_INSTALL_PREFIX? Did you forget to
>> use the leading slash by any chance?
>>
>> Mojca
>>
>>
>> On Tue, Jan 21, 2014 at 3:07 PM, Michal Knap <michal.knap at gmail.com<mailto:michal.knap at gmail.com>>
>> wrote:
>> > Thanks a lot. I solved problems with CLHEP (i hope so) but no i have
>> > this
>> > while configuring:
>> >
>> >
>> > CMake Error at
>> > cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:512
>> > (file):
>> > file RELATIVE_PATH must be passed a full path to the directory:
>> > opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make
>> > Call Stack (most recent call first):
>> > CMakeLists.txt:116 (include)
>> >
>> >
>> > CMake Error at
>> > cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:520
>> > (file):
>> > file RELATIVE_PATH must be passed a full path to the directory:
>> > opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make
>> > Call Stack (most recent call first):
>> > CMakeLists.txt:116 (include)
>> >
>> >
>> > CMake Error at
>> > cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:533
>> > (file):
>> > file RELATIVE_PATH must be passed a full path to the directory:
>> > opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make
>> >
>> >
>> > Errors occurred during the last pass
>> >
>> > CMake Version 2.8.7
>> > Press [e] to exit help
>> >
>> >
>> >
>> > Thanks in advance.
>> >
>> > Pozdrawiam
>> > Michał Knap
>> >
>> >
>> > 2014/1/21 David Sarrut <David.Sarrut at creatis.insa-lyon.fr<mailto:David.Sarrut at creatis.insa-lyon.fr>>
>> >>
>> >> Hello,
>> >>
>> >> - try a clean installation of Geant4 in a (empty) folder different from
>> >> the source one ("in-source build detected"), be sure to restart from
>> >> scratch
>> >> (even the initial g4 source).
>> >>
>> >> - for the variable CLHEP_LIBRARY you need to provide the path of the
>> >> *library* not the folder, something like :
>> >> /opt/simulations/2.1.1.0/CLHEP/lib/libCLHEP-2.1.1.0.so<http://2.1.1.0/CLHEP/lib/libCLHEP-2.1.1.0.so>
>> >>
>> >> - it is not possible to use clhep delivered with geant4 : you have to
>> >> use
>> >> your own version ("system" clhep), and indicate the path, both to
>> >> geant4
>> >> then to Gate. This is because the clhep delivered with Geant4 is only a
>> >> subset of clhep, and Gate need functions in clhep that are not
>> >> contained in
>> >> this subset.
>> >>
>> >> Sincerely,
>> >> David
>> >>
>> >>
>> >>
>> >>
>> >> On Mon, Jan 20, 2014 at 11:16 PM, Michal Knap <michal.knap at gmail.com<mailto:michal.knap at gmail.com>>
>> >> wrote:
>> >>>
>> >>> I did as You told.
>> >>>
>> >>> root at mknap:/opt/simulations/geant4.9.5.p02_build# ccmake
>> >>> ../geant4.9.5.p02 -DGEANT4_USE_SYSTEM_CLHEP=OFF
>> >>>
>> >>>
>> >>> ________________________________________________________________________________________
>> >>> CLHEP_INCLUDE_DIR
>> >>> /opt/simulations/2.1.1.0/CLHEP<http://2.1.1.0/CLHEP>
>> >>> CLHEP_LIBRARY
>> >>> /opt/simulations/2.1.1.0/CLHEP/bin<http://2.1.1.0/CLHEP/bin>
>> >>> CMAKE_BUILD_TYPE Release
>> >>> CMAKE_INSTALL_PREFIX
>> >>> opt/simulations/geant4.9.5.p02_install
>> >>> GEANT4_INSTALL_DATA ON
>> >>> GEANT4_USE_G3TOG4 OFF
>> >>> GEANT4_USE_GDML OFF
>> >>> GEANT4_USE_INVENTOR OFF
>> >>> GEANT4_USE_OPENGL_X11 ON
>> >>> GEANT4_USE_QT ON
>> >>> GEANT4_USE_RAYTRACER_X11 OFF
>> >>> GEANT4_USE_XM OFF
>> >>> QT_QMAKE_EXECUTABLE
>> >>> /usr/bin/qmake
>> >>>
>> >>>
>> >>>
>> >>> ______________________________________________________________________________
>> >>> CMake Error at
>> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:512 (file):
>> >>> file RELATIVE_PATH must be passed a full path to the directory:
>> >>>
>> >>> opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make
>> >>>
>> >>> Call Stack (most recent call first):
>> >>> CMakeLists.txt:116 (include)
>> >>>
>> >>>
>> >>>
>> >>> CMake Error at
>> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:520 (file):
>> >>> file RELATIVE_PATH must be passed a full path to the directory:
>> >>>
>> >>> opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make
>> >>>
>> >>> Call Stack (most recent call first):
>> >>> CMakeLists.txt:116 (include)
>> >>>
>> >>>
>> >>>
>> >>> CMake Error at
>> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:533 (file):
>> >>> file RELATIVE_PATH must be passed a full path to the directory:
>> >>>
>> >>> opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make
>> >>>
>> >>> Call Stack (most recent call first):
>> >>> CMakeLists.txt:116 (include)
>> >>>
>> >>>
>> >>>
>> >>> CMake Error at
>> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:592 (file):
>> >>> file RELATIVE_PATH must be passed a full path to the directory:
>> >>> opt/simulations/geant4.9.5.p02_install/bin
>> >>>
>> >>> Call Stack (most recent call first):
>> >>> CMakeLists.txt:116 (include)
>> >>>
>> >>>
>> >>>
>> >>> CMake Error at
>> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:601 (file):
>> >>>
>> >>>
>> >>> Errors occurred during the last pass
>> >>>
>> >>> CMake Version 2.8.7
>> >>> Press [e] to exit help
>> >>>
>> >>>
>> >>> Still something wrong.
>> >>> Can You help?
>> >>>
>> >>> Pozdrawiam
>> >>> Michał Knap
>> >>>
>> >>>
>> >>> 2014/1/20 Mojca Miklavec <mojca.miklavec.lists at gmail.com<mailto:mojca.miklavec.lists at gmail.com>>
>> >>>>
>> >>>> On Mon, Jan 20, 2014 at 10:42 PM, Michal Knap wrote:
>> >>>> > I did as You told and i get this:
>> >>>> >
>> >>>> > CMake Error at
>> >>>> > /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:91
>> >>>> > (MESSAGE):
>> >>>> > Could NOT find CLHEP:
>> >>>> >
>> >>>> > CLHEP Header Path Not Found
>> >>>> >
>> >>>> > CLHEP Library Not Found
>> >>>> >
>> >>>> > Incompatible versions, (found) < 2.1.0.1(required)
>> >>>> >
>> >>>> > (missing: CLHEP_LIBRARY CLHEP_INCLUDE_DIR) (Required is at
>> >>>> > least
>> >>>> > version "2.1.0.1")
>> >>>> > Call Stack (most recent call first):
>> >>>> >
>> >>>> >
>> >>>> > /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:252
>> >>>> > (_FPHSA_FAILURE_MESSAGE)
>> >>>> > cmake/Modules/FindCLHEP.cmake:238
>> >>>> > (find_package_handle_standard_args)
>> >>>> > cmake/Modules/Geant4OptionalComponents.cmake:41 (find_package)
>> >>>> > CMakeLists.txt:79 (include)
>> >>>> >
>> >>>> > What is wrong this time?
>> >>>>
>> >>>> I use the following options to compile with system's clhep (or a
>> >>>> local
>> >>>> installation of CLHEP that may be located anywhere as long as the
>> >>>> path
>> >>>> is provided):
>> >>>>
>> >>>> -DGEANT4_USE_SYSTEM_CLHEP=ON \
>> >>>> -DCLHEP_CONFIG_EXECUTABLE=${prefix}/bin/clhep-config \
>> >>>> -DCLHEP_INCLUDE_DIR=${prefix}/include \
>> >>>> -DCLHEP_LIBRARY=${prefix}/lib/libCLHEP.dylib
>> >>>>
>> >>>> (where you need to replace ${prefix} with the actual place where you
>> >>>> have CLHEP installed).
>> >>>>
>> >>>> The following is not true:
>> >>>> > System clhep means you have your own clhep.
>> >>>>
>> >>>> This used to be the case in Gate a while ago (not in Geant4), but
>> >>>> Gate
>> >>>> fixed this recently as well.
>> >>>>
>> >>>> If you want to build the built-in CLHEP, you actually need to run
>> >>>> [c]cmake ../geant4.9.5-p02 -DGEANT4_USE_SYSTEM_CLHEP=OFF
>> >>>> or set that variable in the installer. But last time I tried, the
>> >>>> built-in CLHEP from Geant4 wasn't sufficient for Gate for some
>> >>>> reason.
>> >>>>
>> >>>> It doesn't help you to export PATH and LD_LIBRARY_PATH. You need to
>> >>>> set the proper variables either in ccmake or as command-line
>> >>>> arguments
>> >>>> to cmake.
>> >>>>
>> >>>> Mojca
>> >>>
>> >>>
>> >>>
>> >>> _______________________________________________
>> >>> Gate-users mailing list
>> >>> Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
>> >>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> >>
>> >>
>> >>
>> >>
>> >> --
>> >> David Sarrut, Phd
>> >> Directeur de recherche CNRS
>> >> CREATIS, UMR CNRS 5220, Inserm U 1044
>> >> Centre de lutte contre le cancer Léon Bérard
>> >> 28 rue Laënnec, 69373 Lyon cedex 08
>> >> Tel : 04 78 78 51 51 / 06 74 72 05 42
>> >> http://www.creatis.insa-lyon.fr/~dsarrut
>> >> _________________________________
>> >> "2 + 2 = 5, for extremely large values of 2"
>> >> _________________________________
>> >
>> >
>
>
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