[Gate-users] GATE on Rocks CLUSTER

[Simon Stute]

Please read carefully the cluster section
http://wiki.opengatecollaboration.org/index.php/Users_Guide_V6.2:How_to_run_Gate#Cluster_mode
You have to split your macro using the gjs program : if you can use 128
cores for example, split it into 128 peaces.
Then submit these peaces to the cluster: that part is depending on your
cluster, so you have to build it on yourself (ask to the person in charge
of your cluster).
Once it is finished, just merge the output files from all peaces.

Simon


On Wed, Apr 16, 2014 at 4:23 PM, Ba Es <begate at ymail.com> wrote:

> Dear Simon,
> Thanks for your help. my problem is that how can I build the submission
> script adapted for our rock cluster?
> I install GATE 6.1 on  frontend as said in
> http://wiki.opengatecollaboration.org/index.php/New_Compilation_Procedure,
> then I copy all necessary lib file to others nods, and then check that all
> the CPU individually can run GATE.
> now what can I must do for parallel computing?
>   On Wednesday, April 16, 2014 12:42 PM, Simon Stute <gate.stute at gmail.com>
> wrote:
>  Hi,
>
> You can run Gate on all type of clusters.
> The cluster tools provided help to split your macro in many pieces to be
> sent to the different computation units of your cluster.
> When it is said that supported platforms are "X, Y and Z", it means that
> the cluster tool can generate the submission script adapted for your
> platform is you use one of them.
> On another cluster platform, the cluster tools will still provide you the
> essential which is an automatic splitting of your macro and the ability to
> merge root files with coherent event IDs.
> You will just have to build the submission script adapted for your rock
> cluster on your own, that's all.
>
> Simon
>
>
> On Wed, Apr 16, 2014 at 8:14 AM, Ba Es <begate at ymail.com> wrote:
>
> Dear GATE user,
> According to  GATE user guide, the supported platforms for cluster
> computing of GATE are:
> openMosix, openPBS, Condor and Xgrid.
> we have a rocks cluster in our lab:
> www.rocksclusters.org | Rocks Website<http://www.rocksclusters.org/wordpress/>
>  [image: image] <http://www.rocksclusters.org/wordpress/>
>  www.rocksclusters.org | Rocks Website<http://www.rocksclusters.org/wordpress/>
> The latest update of Rocks codename Emerald Boa is now released.
> View on www.rocksclusters.org <http://www.rocksclusters.org/wordpress/>
>  Preview by Yahoo
>
> Anyone know how can we run GATE on this cluster?
> I Install GATE6.1 on it.
> Thanks
>
> Babak
>
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