[Gate-users] Help in installing Gate 6.1
Siti Salasiah MusNMey
ctsalasiah1950 at gmail.com
Sun Jan 20 11:29:03 CET 2013
My env_gate.sh as follows. Please advise on what is my mistake:
export G4ANALYSIS_USE_GENERAL=1
export G4_USE_G4BESTUNIT_FOR_VERBOSE=1
export G4VERSION=9.4
export G4INSTALL=/home/siti/Gate6/geant4.9.4.p04
export ROOTSYS=/home/siti/Gate6/root
export GATEHOME=/home/siti/Gate6/gate_v6.1
export LD_LIBRARY_PATH=$ROOTSYS/include/:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/home/siti/Gate6/2.1.0.1/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$GATEHOME/tmp/Linux-g++/Gate:$LD_LIBRARY_PATH
export PATH=$ROOTSYS/bin:$PATH
export PATH=$GATEHOME/bin/Linux-g++:$PATH
export LMF_HOME=/home/siti/Gate6/lmf_3.0
export ECAT7_HOME=/home/siti/Gate6/ecat_7
### source command result:
The current value of G4INSTALL is: /home/siti/Gate6/geant4.9.4.p04
The current value of G4VERSION is: 9.4
Launching Geant4 configuration script /home/siti/Gate6/geant4.9.4.p04/env.sh
On this machine the G4SYSTEM=Linux-g++
On this machine the G4INSTALL=/home/siti/Gate6/geant4.9.4.p04
On this machine the G4INCLUDE=/home/siti/Gate6/geant4.9.4.p04/include/
On this machine the G4LIB=/home/siti/Gate6/geant4.9.4.p04/lib
On this machine the G4LEVELGAMMADATA=n/PhotonEvaporation2.1
On this machine the G4RADIOACTIVEDATA=n/RadioactiveDecay3.3
On this machine the G4LEDATA=n/G4EMLOW6.19
On this machine the G4NEUTRONHPDATA=n/G4NDL3.14
On this machine the G4ABLADATA=n/G4ABLA3.0
On this machine the G4REALSURFACEDATA=n/RealSurface1.0
On this machine the G4NEUTRONXSDATA=n/G4NEUTRONXS1.0
On this machine the G4PIIDATA=n/G4PII1.2
On this machine the CLHEP_BASE_DIR=/home/siti/Gate6/2.1.0.1
On this machine the CLHEP_INCLUDE_DIR=/home/siti/Gate6/2.1.0.1/include
On this machine the CLHEP_LIB_DIR=/home/siti/Gate6/2.1.0.1/lib
On this machine the CLHEP_LIB=CLHEP
On this machine the G4UI_USE_TCSH=1
On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
On this machine the G4VIS_USE_OPENGLX=1
On this machine the XMFLAGS=
On this machine the XMLIBS=
On this machine the XMFLAGS=
On this machine the XAWFLAGS=
On this machine the XAWLIBS=
On this machine the G4LIB_BUILD_SHARED=1
On this machine the G4LIB_USE_GRANULAR=1
Configuring GATE options
G4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled
Ascii data output enabled
Transport and generation of optical photons is disabled
Checking your LD_LIBRARY_PATH variable...
==> OK: /home/siti/Gate6/root/lib added to your LD_LIBRARY_PATH
Use of ROOT enabled
ROOT real-time plotter disabled
Checking your LD_LIBRARY_PATH variable...
==> OK: /home/siti/Gate6/lmf_3.0/lib added to your LD_LIBRARY_PATH
LMF data output enabled
ECAT7 data output enabled
GATEHOME is set to /home/siti/Gate6/gate_v6.1
Checking your path variable...
==> OK: /home/siti/Gate6/gate_v6.1/bin/Linux-g++ is already in your path
variable
Checking your LD_LIBRARY_PATH variable...
==> OK: /home/siti/Gate6/gate_v6.1/tmp/Linux-g++/Gate is already in your
path variable
G4VERSION9_3 is set: GATE is compatible with the GEANT4 version 9.3 and 9.4
Done
%%%%%%%%%%% Make
Making dependency for file Gate.cc ...
In file included from ./source/physics/include/GateSourceMgr.hh:20:0,
from Gate.cc:21:
./source/physics/include/GateSourcePhaseSpace.hh:14:19: fatal error:
TROOT.h: No such file or directory
compilation terminated.
Entering source/arf ...
Making dependency for file src/GateARFTableMgr.cc ...
In file included from src/GateARFTableMgr.cc:12:0:
../arf/include/GateARFTable.hh:18:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateARFTable.cc ...
In file included from src/GateARFTable.cc:11:0:
../arf/include/GateARFTable.hh:18:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateARFSDMessenger.cc ...
In file included from src/GateARFSDMessenger.cc:13:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateARFSD.cc ...
In file included from src/GateARFSD.cc:12:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateARFDataToRootMessenger.cc ...
In file included from ../arf/include/GateARFDataToRootMessenger.hh:17:0,
from src/GateARFDataToRootMessenger.cc:13:
../arf/include/GateARFDataToRoot.hh:18:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateARFDataToRoot.cc ...
In file included from src/GateARFDataToRoot.cc:14:0:
../arf/include/GateARFDataToRoot.hh:18:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Compiling GateARFDataToRoot.cc ...
In file included from src/GateARFDataToRoot.cc:14:0:
../arf/include/GateARFDataToRoot.hh:18:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
make[1]: *** [../../tmp/Linux-g++/Gate/GateARFDataToRoot.o] Error 1
source/arf finished
Entering source/geometry ...
Making dependency for file src/GateVVolume.cc ...
In file included from src/GateVVolume.cc:46:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateVSystem.cc ...
In file included from src/GateVSystem.cc:27:0:
../general/include/GateRootDefs.hh:20:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateSPECTHeadSystem.cc ...
In file included from src/GateSPECTHeadSystem.cc:19:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateDetectorConstruction.cc ...
In file included from src/GateDetectorConstruction.cc:43:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Compiling GateDetectorConstruction.cc ...
In file included from src/GateDetectorConstruction.cc:43:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
make[1]: *** [../../tmp/Linux-g++/Gate/GateDetectorConstruction.o] Error 1
source/geometry finished
Entering source/general ...
Making dependency for file src/GateRootDefs.cc ...
In file included from src/GateRootDefs.cc:13:0:
../general/include/GateRootDefs.hh:20:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GatePrimaryGeneratorAction.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GatePrimaryGeneratorAction.cc:28:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateIntImage.cc ...
src/GateIntImage.cc:26:19: fatal error: TFile.h: No such file or directory
compilation terminated.
Making dependency for file src/GateImage.cc ...
src/GateImage.cc:26:19: fatal error: TFile.h: No such file or directory
compilation terminated.
Making dependency for file src/GateApplicationMgr.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateApplicationMgr.cc:24:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Compiling GateApplicationMgr.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateApplicationMgr.cc:24:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
make[1]: *** [../../tmp/Linux-g++/Gate/GateApplicationMgr.o] Error 1
source/general finished
Entering source/digits_hits ...
Making dependency for file src/GateUserActions.cc ...
In file included from ../digits_hits/include/GateActions.hh:30:0,
from src/GateUserActions.cc:16:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateTrajectoryNavigator.cc ...
In file included from ../digits_hits/include/GateActions.hh:30:0,
from src/GateTrajectoryNavigator.cc:19:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateTrackLengthActorMessenger.cc ...
In file included from src/GateTrackLengthActorMessenger.cc:17:0:
../digits_hits/include/GateTrackLengthActor.hh:29:19: fatal error: TROOT.h:
No such file or directory
compilation terminated.
Making dependency for file src/GateTrackLengthActor.cc ...
In file included from src/GateTrackLengthActor.cc:20:0:
../digits_hits/include/GateTrackLengthActor.hh:29:19: fatal error: TROOT.h:
No such file or directory
compilation terminated.
Making dependency for file src/GateTrack.cc ...
In file included from src/GateTrack.cc:4:0:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateToRootMessenger.cc ...
In file included from ../digits_hits/include/GateToRootMessenger.hh:18:0,
from src/GateToRootMessenger.cc:13:
../digits_hits/include/GateToRoot.hh:17:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateToRoot.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateToRoot.cc:38:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateToASCII.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateToASCII.cc:44:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSteppingActionMessenger.cc ...
In file included from ../digits_hits/include/GateActions.hh:30:0,
from src/GateSteppingActionMessenger.cc:13:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateSecondaryProductionActor.cc ...
In file included from src/GateSecondaryProductionActor.cc:19:0:
../digits_hits/include/GateSecondaryProductionActor.hh:30:19: fatal error:
TROOT.h: No such file or directory
compilation terminated.
Making dependency for file src/GateROOTBasicOutputMessenger.cc ...
In file included from ../digits_hits/include/GateActions.hh:30:0,
from
../digits_hits/include/GateROOTBasicOutputMessenger.hh:21,
from src/GateROOTBasicOutputMessenger.cc:12:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Making dependency for file src/GateROOTBasicOutput.cc ...
In file included from src/GateROOTBasicOutput.cc:12:0:
../digits_hits/include/GateROOTBasicOutput.hh:21:19: fatal error: TROOT.h:
No such file or directory
compilation terminated.
Making dependency for file src/GateProjectionSet.cc ...
In file included from src/GateProjectionSet.cc:15:0:
../arf/include/GateARFSD.hh:17:19: fatal error: TROOT.h: No such file or
directory
compilation terminated.
Making dependency for file src/GatePhaseSpaceActorMessenger.cc ...
In file included from src/GatePhaseSpaceActorMessenger.cc:24:0:
../digits_hits/include/GatePhaseSpaceActor.hh:21:19: fatal error: TROOT.h:
No such file or directory
compilation terminated.
Making dependency for file src/GatePhaseSpaceActor.cc ...
In file included from src/GatePhaseSpaceActor.cc:23:0:
../digits_hits/include/GatePhaseSpaceActor.hh:21:19: fatal error: TROOT.h:
No such file or directory
compilation terminated.
Making dependency for file src/GateOutputMgr.cc ...
In file included from src/GateOutputMgr.cc:27:0:
../digits_hits/include/GateHitFileReader.hh:26:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateHitFileReaderMessenger.cc ...
In file included from src/GateHitFileReaderMessenger.cc:15:0:
../digits_hits/include/GateHitFileReader.hh:26:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateHitFileReader.cc ...
src/GateHitFileReader.cc:14:21: fatal error: TBranch.h: No such file or
directory
compilation terminated.
Making dependency for file src/GateEnergySpectrumActorMessenger.cc ...
In file included from src/GateEnergySpectrumActorMessenger.cc:16:0:
../digits_hits/include/GateEnergySpectrumActor.hh:31:19: fatal error:
TROOT.h: No such file or directory
compilation terminated.
Making dependency for file src/GateEnergySpectrumActor.cc ...
In file included from src/GateEnergySpectrumActor.cc:20:0:
../digits_hits/include/GateEnergySpectrumActor.hh:31:19: fatal error:
TROOT.h: No such file or directory
compilation terminated.
Making dependency for file src/GateAnalysis.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateAnalysis.cc:30:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateActions.cc ...
In file included from ../digits_hits/include/GateActions.hh:30:0,
from src/GateActions.cc:14:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
Compiling GateActions.cc ...
In file included from ../digits_hits/include/GateActions.hh:30:0,
from src/GateActions.cc:14:
../digits_hits/include/GateTrack.hh:10:19: fatal error: TROOT.h: No such
file or directory
compilation terminated.
make[1]: *** [../../tmp/Linux-g++/Gate/GateActions.o] Error 1
source/digits_hits finished
Entering source/physics ...
Making dependency for file src/GateVSourceVoxelReader.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateVSourceVoxelReader.cc:20:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateVSource.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateVSource.cc:24:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourceTPSPencilBeamMessenger.cc ...
In file included from ../physics/include/GateSourceTPSPencilBeam.hh:27:0,
from src/GateSourceTPSPencilBeamMessenger.cc:15:
../physics/include/GateSourcePencilBeam.hh:35:19: fatal error: TMath.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourceTPSPencilBeam.cc ...
In file included from ../physics/include/GateSourceTPSPencilBeam.hh:27:0,
from src/GateSourceTPSPencilBeam.cc:17:
../physics/include/GateSourcePencilBeam.hh:35:19: fatal error: TMath.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourcePhaseSpaceMessenger.cc ...
In file included from src/GateSourcePhaseSpaceMessenger.cc:15:0:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourcePhaseSpace.cc ...
In file included from src/GateSourcePhaseSpace.cc:13:0:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourcePencilBeamMessenger.cc ...
In file included from src/GateSourcePencilBeamMessenger.cc:15:0:
../physics/include/GateSourcePencilBeam.hh:35:19: fatal error: TMath.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourcePencilBeam.cc ...
In file included from src/GateSourcePencilBeam.cc:17:0:
../physics/include/GateSourcePencilBeam.hh:35:19: fatal error: TMath.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourceMgrMessenger.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from ../physics/include/GateSourceMgrMessenger.hh:17,
from src/GateSourceMgrMessenger.cc:12:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourceMgr.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateSourceMgr.cc:19:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourceLinacBeamMessenger.cc ...
In file included from
../physics/include/GateSourceLinacBeamMessenger.hh:18:0,
from src/GateSourceLinacBeamMessenger.cc:12:
../physics/include/GateSourceLinacBeam.hh:21:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateSourceLinacBeam.cc ...
In file included from src/GateSourceLinacBeam.cc:11:0:
../physics/include/GateSourceLinacBeam.hh:21:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateRTPhantom.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateRTPhantom.cc:6:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Making dependency for file src/GateFastI124.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateFastI124.cc:14:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
Compiling GateFastI124.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20:0,
from src/GateFastI124.cc:14:
../physics/include/GateSourcePhaseSpace.hh:14:19: fatal error: TROOT.h: No
such file or directory
compilation terminated.
make[1]: *** [../../tmp/Linux-g++/Gate/GateFastI124.o] Error 1
source/physics finished
Compiling Gate.cc ...
In file included from ./source/physics/include/GateSourceMgr.hh:20:0,
from Gate.cc:21:
./source/physics/include/GateSourcePhaseSpace.hh:14:19: fatal error:
TROOT.h: No such file or directory
compilation terminated.
make: *** [tmp/Linux-g++/Gate/exe/Gate.o] Error 1
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