[Gate-users] Fwd: Gate 6.1 Installation Problem

Hermann Fuchs hermann.fuchs at meduniwien.ac.at
Mon Dec 2 13:28:56 CET 2013


Hi

depending on your makefile you may need to change a few lines in the
gnumakefile

See
http://wiki.opengatecollaboration.org/index.php/ERRATA_in_GATEv6.1_sources
It may also be worth a try to try the unaltered makefiles

Cheers,
Hermann

On Mon, 2013-12-02 at 12:02 +0100, Michal Knap wrote:
> Hi,
> It looks like this:
>  
> [mknap at mknap gate_v6.1]$ make
> Entering source/arf ...
> GNUmakefile:26: /GateCommon.gmk: No such file or directory
> make: *** No rule to make target /GateCommon.gmk)`. Stop.
> source/arf finished
> Entering source/geometry
> GNUmakefile:26: /GateCommon.gmk: No such file or directory
> make: *** No rule to make target /GateCommon.gmk)`. Stop.
> source/geometry finished
> Entering source/general ...
> GNUmakefile:26: /GateCommon.gmk: No such file or directory
> make: *** No rule to make target /GateCommon.gmk)`. Stop.
> source/general finished
> Entering source/digits_hits ...
> GNUmakefile:26: /GateCommon.gmk: No such file or directory
> make: *** No rule to make target /GateCommon.gmk)`. Stop.
> source/digits_hits finished
> Entering source/physics ...
> GNUmakefile:26: /GateCommon.gmk: No such file or directory
> make: *** No rule to make target /GateCommon.gmk)`. Stop.
> source/physics finished
> Creating shared library tmp/Linux-g++/Gate/libGate.so ...
> g++: error: *.o:  No such file or directory
> make: *** [tmp/Linux-g++/Gate/libGate.so] Error 1
> 
>  
> I really don't know what is wrong. thank you in advance
>  
> 
> 
> Pozdrawiam
> Michał Knap
> 
> 
> 
> 
> 2013/12/2 Hermann Fuchs <hermann.fuchs at meduniwien.ac.at>
> 
>         Hello
>         
>         unfortuntely I can not read polish, therefore I can not
>         comment on your error messages.
>         However it seams to be some kind of issue related to
>         make/gmake.
>         Could you translate your error messages?
>         
>         Cheers,
>         Hermann
>         
>         
>         
>         On Sun, 2013-12-01 at 22:21 +0100, Michal Knap wrote: 
>         
>         > Hi,
>         > I'm a student of Technological University of Warsaw. 
>         > I'm trying to install Geat4.9.4.p04 Gate 6.0 on Fedora 15
>         > 32bit.
>         > 
>         > I'm using this instruction:
>         > http://wiki.opengatecollaboration.org/index.php/New_Compilation_Procedure
>         > 
>         > Everything was fine until this part (Gate6 Installation)
>         > 
>         > [mknap at mknap gate_v6.1]$ source env_gate.sh
>         > 
>         > The current value of G4INSTALL
>         > is: /home/mknap/Gate/opt/simulations/geant4.9.4.p04
>         > The current value of G4VERSION is: 9.4
>         > 
>         > Launching Geant4 configuration
>         > script /home/mknap/Gate/opt/simulations/geant4.9.4.p04/env.sh
>         > 
>         > On this machine the G4SYSTEM=Linux-g++
>         > On this machine the
>         > G4INSTALL=/home/mknap/Gate/opt/simulations/geant4.9.4.p04
>         > On this machine the
>         > G4INCLUDE=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/include/
>         > On this machine the
>         > G4LIB=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/lib
>         > On this machine the
>         > G4LEVELGAMMADATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/PhotonEvaporation2.1
>         > On this machine the
>         > G4RADIOACTIVEDATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/RadioactiveDecay3.3
>         > On this machine the
>         > G4LEDATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/G4EMLOW6.19
>         > On this machine the
>         > G4NEUTRONHPDATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/G4NDL3.14
>         > On this machine the
>         > G4ABLADATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/G4ABLA3.0
>         > On this machine the
>         > G4REALSURFACEDATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/RealSurface1.0
>         > On this machine the
>         > G4NEUTRONXSDATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/G4NEUTRONXS1.0
>         > On this machine the
>         > G4PIIDATA=/home/mknap/Gate/opt/simulations/geant4.9.4.p04/data/G4PII1.2
>         > On this machine the CLHEP_BASE_DIR=/usr/local
>         > On this machine the CLHEP_INCLUDE_DIR=/usr/local/include
>         > On this machine the CLHEP_LIB_DIR=/usr/local/lib
>         > On this machine the CLHEP_LIB=CLHEP
>         > On this machine the G4UI_USE_TCSH=1
>         > On this machine the G4UI_BUILD_XAW_SESSION=1
>         > On this machine the G4UI_USE_XAW=1
>         > On this machine the G4UI_BUILD_XM_SESSION=1
>         > On this machine the G4UI_USE_XM=1
>         > On this machine the G4UI_BUILD_QT_SESSION=1
>         > On this machine the G4UI_USE_QT=1
>         > On this machine the G4VIS_BUILD_DAWN_DRIVER=1
>         > On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
>         > On this machine the G4VIS_BUILD_OPENGLXM_DRIVER=1
>         > On this machine the G4VIS_BUILD_RAYTRACERX_DRIVER=1
>         > On this machine the G4VIS_BUILD_VRML_DRIVER=1
>         > On this machine the G4VIS_BUILD_OPENGLQT_DRIVER=1
>         > On this machine the G4VIS_USE_DAWN=1
>         > On this machine the G4VIS_USE_OPENGLX=1
>         > On this machine the G4VIS_USE_OPENGLXM=1
>         > On this machine the G4VIS_USE_RAYTRACERX=1
>         > On this machine the G4VIS_USE_VRML=1
>         > On this machine the G4VIS_USE_OPENGLQT=1
>         > On this machine the XMFLAGS=
>         > On this machine the XMLIBS= -lXm -lXpm
>         > On this machine the XMFLAGS=
>         > On this machine the XAWFLAGS=
>         > On this machine the XAWLIBS= -lXaw
>         > On this machine the QTMOC=/usr/bin/moc-qt4
>         > On this machine the QTFLAGS=-I/usr/include
>         > -I/usr/include/QtCore -I/usr/include/QtGui
>         > -I/usr/include/QtOpenGL
>         > On this machine the QTLIBS=-L/usr/lib -lQtCore_debug -lQtGui
>         > On this machine the GLQTLIBS=-L/usr/lib -lQtCore_debug
>         > -lQtGui -lQtOpenGL
>         > On this machine the G4LIB_BUILD_GDML=1
>         > On this machine the XERCESCROOT=
>         > On this machine the G4LIB_BUILD_G3TOG4=1
>         > On this machine the G4LIB_USE_G3TOG4=1
>         > On this machine the G4LIB_BUILD_ZLIB=1
>         > On this machine the G4LIB_USE_ZLIB=1
>         > On this machine the G4LIB_BUILD_SHARED=1
>         > On this machine the G4LIB_BUILD_STATIC=1
>         > 
>         > Configuring GATE options
>         > 
>         > G4WORKDIR set to .
>         > G4TMP set to ./tmp
>         > G4BIN set to ./bin
>         > Data analysis and output features enabled
>         > Ascii data output enabled
>         > Transport and generation of optical photons is disabled
>         > Checking your LD_LIBRARY_PATH variable...
>         >  ==> OK: /home/mknap/Gate/opt/simulations/root/lib is
>         > already in your LD_LIBRARY_PATH
>         > Use of ROOT enabled
>         > ROOT real-time plotter disabled
>         > Checking your LD_LIBRARY_PATH variable...
>         >  ==> OK: /home/mknap/Gate/opt/simulations/lmf_v3.0/lib added
>         > to your LD_LIBRARY_PATH
>         > LMF data output enabled
>         > ECAT7 data output enabled
>         > GATEHOME is set
>         > to /home/mknap/Gate/opt/simulations/gate_v6.1
>         > Checking your path variable...
>         >  ==>
>         > OK: /home/mknap/Gate/opt/simulations/gate_v6.1/bin/Linux-g++
>         > is already in your path variable
>         > Checking your LD_LIBRARY_PATH variable...
>         >  ==>
>         > OK: /home/mknap/Gate/opt/simulations/gate_v6.1/tmp/Linux-g
>         > ++/Gate added to your path variable
>         > G4VERSION9_3 is set: GATE is compatible with the GEANT4
>         > version 9.3 and 9.4
>         > 
>         > Done
>         > 
>         > 
>         > 
>         > After this i type "make" and here i the problems starts: 
>         > 
>         > [mknap at mknap gate_v6.1]$ make
>         > Entering source/arf ...
>         > GNUmakefile:26: GateCommon.gmk: Nie ma takiego pliku ani
>         > katalogu
>         > make[1]: *** Brak reguł do wykonania obiektu
>         > `GateCommon.gmk'. Stop.
>         > source/arf finished
>         > 
>         > ( in english:  GNUmakefile:26: /GateCommon.gmk: No such file
>         > or directory
>         > make: *** No rule to make target  /GateCommon.gmk)`
>         > 
>         > Entering source/geometry ...
>         > GNUmakefile:26: GateCommon.gmk: Nie ma takiego pliku ani
>         > katalogu
>         > make[1]: *** Brak reguł do wykonania obiektu
>         > `GateCommon.gmk'. Stop.
>         > source/geometry finished
>         > Entering source/general ...
>         > GNUmakefile:25: GateCommon.gmk: Nie ma takiego pliku ani
>         > katalogu
>         > make[1]: *** Brak reguł do wykonania obiektu
>         > `GateCommon.gmk'. Stop.
>         > source/general finished
>         > Entering source/digits_hits ...
>         > GNUmakefile:26: GateCommon.gmk: Nie ma takiego pliku ani
>         > katalogu
>         > make[1]: *** Brak reguł do wykonania obiektu
>         > `GateCommon.gmk'. Stop.
>         > source/digits_hits finished
>         > Entering source/physics ...
>         > GNUmakefile:26: GateCommon.gmk: Nie ma takiego pliku ani
>         > katalogu
>         > make[1]: *** Brak reguł do wykonania obiektu
>         > `GateCommon.gmk'. Stop.
>         > source/physics finished
>         > Creating shared library tmp/Linux-g++/Gate/libGate.so ...
>         > g++: error: *.o: Nie ma takiego pliku ani katalogu
>         > make: *** [tmp/Linux-g++/Gate/libGate.so] Błąd 1
>         > 
>         > 
>         > I found this instruction but it doesn't work.
>         > http://wiki.opengatecollaboration.org/index.php/ERRATA_in_GATEv6.1_sources
>         > 
>         > 
>         > 
>         > 
>         > I've done evertything from the errata and still have the
>         > same problem.
>         > 
>         > 
>         > I attached my GNUmakefile, env_gate.sh, and GateCommon.gmk
>         > and screenshot with path to all files. 
>         > 
>         > 
>         > path to files home/Gate/opt/simulations
>         > 
>         > 
>         > 
>         > Does anybody have an idea how to do this? Please help me.
>         > 
>         > 
>         > Regards
>         > 
>         > Michal Knap
>         > 
>         > 
>         > 
>         > 
>         > _______________________________________________
>         > Gate-users mailing list
>         > Gate-users at lists.opengatecollaboration.org
>         > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>         
>         
>         -- 
>         -------------
>         DI Hermann Fuchs
>         Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology
>         Department of Radiation Oncology
>         Medical University Vienna
>         Währinger Gürtel 18-20
>         A-1090 Wien
>         
>         Tel.  + 43 / 1 / 40 400 7271
>         Mail. hermann.fuchs at meduniwien.ac.at
>         
>         
>         _______________________________________________
>         Gate-users mailing list
>         Gate-users at lists.opengatecollaboration.org
>         http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> 
> 
> 

-- 
-------------
DI Hermann Fuchs
Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology
Department of Radiation Oncology
Medical University Vienna
Währinger Gürtel 18-20
A-1090 Wien

Tel.  + 43 / 1 / 40 400 7271
Mail. hermann.fuchs at meduniwien.ac.at
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