[Gate-users] GATE INSTALLATION on Fedora 15 Linux

[Hermann Fuchs]

Hello

Can you post the error message you received?

A first guess: If you set the lmf environment variable but did not
install it, gate will surely complain.
Try removing (or commenting)
export LMF_HOME=

Cheers,
Hermann
On Sat, 2012-03-03 at 01:24 +0200, Dr.Dimitrios Nikolopoulos wrote:
> Dear all.
> 
> I 've trying for the last 8 hours to install GATE, unfortunately, with 
> no success. I am working on two laptops with Fedora 15.
> 
> I have followed all the new instructions. More specifically:
> 
> 1.Installed all the Package requirements
> ---------------------------------------------------
> 
> 
> 2.Installed
> ---------------------------------------------------
>      Clhep from                                        
> www.cern.ch/clhep              VER 2.1.0.1
>      Root from                                         root.cern.ch    
>                       VER 5.32
>      Geant4 and all data files from           www.cern.ch/geant4        
>       VER 4.9.4. patch 03 (I have not found patch 01)
>      Ecat7 from                                       
> http://www.opengatecollaboration.org/
> 
> 
> 
> 3.For GATE i followed the ERRATA in GATE v.6.1 
> http://wiki.opengatecollaboration.org/index.php/ERRATA_in_GATEv6.1_sources
> ---------------------------------------------------
> a.GATEfastAnalysis
> ==================
> I located the file
> /source/digits_hits/src/GateFastAnalysis.cc
> 
> In the file GateFastAnalysis.cc, change line 105 from
> (*CHC)[iHit]->SetSourcePosition(-1);
> to
> (*CHC)[iHit]->SetSourcePosition(G4ThreeVector(-1,-1,-1));
> 
> b.env_gate.sh
> =============
> inside GATE directory...
> 
> b1. After the first comment block I added
> 
> export GATEHOME=/home/Dimitrios/opt/simulation(GATE)/gate6_1
> export G4INSTALL=/home/Dimitrios/opt/simulation(GATE)geant4_9_4_p03 <=== 
> I HAD THE THIRD PATCH!!!!!!!!!
> export G4VERSION=9.4
> export ROOTSYS=/home/Dimitrios/opt/simulation(GATE)/root_5_28
> export ECAT7_HOME=/home/Dimitrios/opt/simulation(GATE)/ecat7
> export LMF_HOME=/home/Dimitrios/opt/simulation(GATE)/lmf_3_0
>   (This informed GATE of the location of the corresponding software 
> packages)
> 
> /home/Dimitrios/opt/simulation(GATE)/ is the installation directory
> 
> b3.Above the lines
> 
> export G4ANALYSIS_USE_GENERAL=1
> export G4_USE_G4BESTUNIT_FOR_VERBOSE=1
> 
> I added
> 
> export 
> LD_LIBRARY_PATH=$ROOTSYS/lib:$ROOTSYS/lib/root:/home/Dimitrios/opt/simulation(GATE)/CLHEP_2_1_0_1/lib
> export PATH=$PATH:$ROOTSYS/bin:$GATEHOME/bin/$G4SYSTEM
> export 
> DYLD_LIBRARY_PATH=$ROOTSYS/lib:/home/Dimitrios/opt/simulation(GATE)/CLHEP_2_1_0_1/lib
> 
> In order to activate GATE support for optical transport, I edited lines 
> 135ff
> #unset GATE_USE_OPTICAL
> export GATE_USE_OPTICAL=1
> 
> I changed G4WORKDIR to /home/Dimitrios/simulation (GATE)
> 
> b4.GNUmakefile
> I changed multiple files,
> 
> gate6_1/source/arf/GNUmakefile
> gate6_1/source/digits_hits/GNUmakefile
> gate6_1/source/general/GNUmakefile
> gate6_1/source/geometry/GNUmakefile
> gate6_1/source/physics/GNUmakefile
> 
> In all of these change line 8-10 from
> 
> if $(G4WORKDIR)=='.'
>     G4WORKDIR=../..
> endif
> 
> towards
> 
> ifeq ($(G4WORKDIR),'.')
> G4WORKDIR=../..
> endif
> 
> 
> b5.Then wrote in terminal source env_gate.sh
> 
> b6.Then
> =================================
> I CHANGED ALL GNUMAKE FILES
> Here all included
> otherwise it searched for info to nowhere!!!!!
> ================================================
> 
> b7. Finally I wrote make
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
>        Q  U  E  S  T  I  O  N
> 
> GATE config-script produced the object files, but failed to produce the 
> libGATE.so and the
> executables
> 
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> 
> 
> CAN ANYBODY PROVIDE ANY HELP?????
> 
> 
> Thank you in advance
> 
> -- 
> Dr.Dimitrios Nikolopoulos
> Environmental-Medical Physics
> _________________________________________________________
> Department of Physics, Chemistry and Material Science,
> Technological Educational Institution (TEI) of Piraeus,
> Petrou Ralli&Thivon 250, 122 44,Aigaleo,Athens, Greece
> 
> e-mail   : dniko at teipir.gr
>             NikolopoulosDimitrios at gmail.com
> 
> Mobile   : +0030-6977-208318
> Home     : +0030-210-9859051
> Tel (TEI): +0030-210-5381229
> Fax (TEI): +0030-210-5381161
> 
> Skype    : dr.dimitrios.nikolopoulos
> _________________________________________________________
> 
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> 

-- 
-------------
DI Hermann Fuchs
Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology
Department of Radiation Oncology
Medical University Vienna
Währinger Gürtel 18-20
A-1090 Wien

Tel.  + 43 / 1 / 40 400 7271
Mail. hermann.fuchs at meduniwien.ac.at