[Gate-users] Gate-users Digest, Vol 79, Issue 13
jehangir khan
jehangir.kahn at gmail.com
Thu Dec 13 10:54:45 CET 2012
hello Gate users!
I recieved test.root output file which contain both singles and
coincidence data. I am using Dr. C. R. Schmidtlein code to get
projection data from my test.root file in same folder and try to
compile by using following command
g++ (test.root) `root-config --cflags --libs` because my output is test.root
it shows me this error
test.root: command not found
/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crt1.o: In
function `_start':
(.text+0x18): undefined reference to `main'
collect2: ld returned 1 exit status
any body know know if there is something wrong in output file or
where I am doing wrong
On 12/13/12, gate-users-request at lists.opengatecollaboration.org
<gate-users-request at lists.opengatecollaboration.org> wrote:
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> Today's Topics:
>
> 1. Simulation of time of photon propagation in scintillator
> (Pawe? Kowalski)
> 2. (no subject) (Ashraf Kaloub)
> 3. Re: Regarding ASCII SINGLES OUTPUT (open researcher)
> 4. Errors while installing Geant 4.9.5.p01 (open researcher)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 12 Dec 2012 14:43:25 +0100
> From: Pawe? Kowalski <flukson at gmail.com>
> To: gate-users <gate-users at lists.opengatecollaboration.org>
> Cc: Krzysztof Nawrocki <krzysztof.nawrocki at ncbj.gov.pl>
> Subject: [Gate-users] Simulation of time of photon propagation in
> scintillator
> Message-ID:
> <CANzsbvJUBCVO-UG7bJ1pDmateJcqtnVPHh_WjR_mFsE4ObKMQw at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hello,
>
> I would like to simulate two periods of time:
> - time of flight of gamma quantum between source and scintillator (t1 on
> attached picture)
> - time of propagation of photon in scintillator (from place of hit of
> gamma quantum to scintillator to photomultiplier - t2 on attached picture).
>
> Is this possible to simulate both these periods of time in GATE?
>
> Any help would be appreciated.
>
> Best regards,
> Pawe? Kowalski,
> National Centre for Nuclear Research, Poland
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> ------------------------------
>
> Message: 2
> Date: Wed, 12 Dec 2012 23:19:31 +0200
> From: Ashraf Kaloub <kaloub25 at hotmail.com>
> To: <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] (no subject)
> Message-ID: <DUB120-W3299C720491F0B63B07DF7D64F0 at phx.gbl>
> Content-Type: text/plain; charset="windows-1255"
>
>
>
>
>
>
>
>
> __________________________________________
> Ashraf I. kaloub,
>
>
> M.Sc. Candidate in IT-Islamic University
>
>
> Computer lecturer
>
>
> Alaqsa-Community College
>
>
> Khan Younis, Gaza
> Strip, Palestine
>
>
>
>
>
> Jawwal: +972 599
> 682875
>
>
> E-mail: kaloub25 at hotmail.com
>
>
>
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> ------------------------------
>
> Message: 3
> Date: Thu, 13 Dec 2012 09:25:30 +0530
> From: open researcher <openresearcher90 at gmail.com>
> To: Vesna Cuplov <vesna.cuplov at gmail.com>
> Cc: gate-users at lists.opengatecollaboration.org
> Subject: Re: [Gate-users] Regarding ASCII SINGLES OUTPUT
> Message-ID:
> <CAOdjMUwXx6Hcs8J9WuM5yx9RGWEr6+z_5wCgF0bVEg5tmVmaJA at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Thank you for the correction, I didn't notice the line 'For the next
> sections, the system will be set as a cylindricalPET system, so that the
> number of lines concerning the Volume ID of each level will always be 5' in
> users guide so I got confused.
>
>
> On Wed, Dec 12, 2012 at 3:27 PM, Vesna Cuplov
> <vesna.cuplov at gmail.com>wrote:
>
>> Hello,
>>
>> I have enabled optical photon generation, and I have included
>>> opticaladder.
>>>
>>> I want to know how many photons had hit a particular pmt (in gate user
>>> guide it is mentioned that
>>> by using optical adder, one gets the information about the number of
>>> photons and not the energy of the photons).
>>>
>>
>> This sentence has been removed in the Gatev6.2 users guide: The optical
>> adder adds energies.
>>
>> But my ascii singles file does not seem to give the details properly.
>> here
>>> is a sample of the ascii optical singles output --------
>>>
>>> 0 1768 4 -5.000e+01 -2.200e+02 0.000e+00 0 0 0
>>> 7.60134730474956721302249e-03 1.488e+03 -4.809e+01 -1.649e+02
>>> -3.745e-01
>>> 0 0 0 0 NULL NULL
>>>
>>
>>> column no 7 to 12 (0 0 0 7.60134730474956721302249e-03
>>> 1.488e+03 -4.809e+01) are supposed to be the volume IDs but I don't
>>> know
>>> how to interpret these floating point numbers!
>>>
>>
>> Be careful, volumeIDs depend on the system that you use for your
>> simulation. You use a cylindrical PET as a system?
>>
>> It seems to me that you use a SPECThead?
>>
>> From the users guide, I read:
>>
>> columns 4,5,6 are the source position: -5.000e+01 -2.200e+02 0.000e+00
>> columns 7, 8, 9 are the volumeIDs: 0 0 0
>> time: 7.60134730474956721302249e-03
>> Energy deposited by single: 1.488e+03
>> position of the single: -4.809e+01 -1.649e+02 -3.745e-01
>> Compton and Rayleigh stuff: 0 0 0 0 NULL NULL
>>
>> vesna
>>
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> Message: 4
> Date: Thu, 13 Dec 2012 14:24:58 +0530
> From: open researcher <openresearcher90 at gmail.com>
> To: gate-users at lists.opengatecollaboration.org
> Subject: [Gate-users] Errors while installing Geant 4.9.5.p01
> Message-ID:
> <CAOdjMUwXOnrt-U7Eajk9aD2=W_oeyZu5kWTLb9OKsvc8hp1Mqw at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi gate users
> I want to install Gate V 6.2. so, while installing Geant 4.9.5.p01 after I
> type the command ccmake ../geant4.9.5.p01 I am getting the screen which is
> mentioned in the Gate V 6.2 installation guide and when I press 'c' to
> configure I am getting following errors --------
>
> ----------------------------------------------------------------------------
> CMake Error at CMakeLists.txt:64 (include):
> include could not find load file:
>
> Geant4MacroUtilities
>
>
>
> CMake Error at CMakeLists.txt:67 (include):
> include could not find load file:
>
> CMakeUninstallTarget
>
>
>
> CMake Error at CMakeLists.txt:70 (include):
> include could not find load file:
>
> Geant4ValidateSources
>
>
>
> CMake Error at CMakeLists.txt:73 (include):
> include could not find load file:
>
> Geant4InstallDirs
>
>
>
> CMake Error at cmake/Modules/Geant4LibraryBuildOptions.cmake:23 (include):
> include could not find load file:
>
> Geant4BuildModes
> Call Stack (most recent call first):
> CMakeLists.txt:76 (include)
>
>
>
> CMake Error at cmake/Modules/Geant4LibraryBuildOptions.cmake:118
> (GEANT4_ADD_FEATURE):
> Unknown CMake command "GEANT4_ADD_FEATURE".
> Call Stack (most recent call first):
> CMakeLists.txt:76 (include)
> -----------------------------------------------------------------------------------
>
>
> And where should I put G4EMLOW, RealSurface etc etc folders. (I have copied
> all these in a folder named data and put this folder in geant4.9.5.p01
> directory is it ok ?????)
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