[Gate-users] Problem with installation GATE
wugc
wuguocheng at neusoft.com
Wed Oct 19 10:27:42 CEST 2011
Hi Manuele
I meted the problem also, and I solved as follows:
Copy all files from the path ${OPENGATE_HOME}/root/include/root/ to the ${OPENGATE_HOME}/root/include folder,
of cause, you can modify your root include path.
Kind regards,
2011-10-19
wugc
发件人： gate-users-request
发送时间： 2011-10-19 16:02:00
收件人： gate-users
抄送：
主题： Gate-users Digest, Vol 65, Issue 22
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Today's Topics:
1. Problem with installation GATE (Manuele.Calussi at gmail.com)
2. What do I open the gate? (???)
3. No diagram on root (lupa euy)
4. No Coincidences output (?? ?)
5. How to open the Gate? (???)
6. Re: No Coincidences output (Marlen Priegnitz)
7. Re: No Coincidences output (lupa euy)
8. question in open GATE (???)
----------------------------------------------------------------------
Message: 1
Date: Tue, 18 Oct 2011 14:44:36 +0000
From: Manuele.Calussi at gmail.com
To: gate-users <gate-users at lists.opengatecollaboration.org>
Subject: [Gate-users] Problem with installation GATE
Message-ID: <000e0cd1eab02c9b4d04af93c306 at google.com>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes
Hi gate users,
I have one problem with the installation of Gate version 6.0; I have
installed every programs needed to the configuration of this program:
geant4 version 9.1, root version 5.29 and lmf3.
When I add to the env_gate.sh file the comands, written in the installation
user guide:
export OPENGATE_HOME=/home/manuele/Gate6
export GATEHOME=${OPENGATE_HOME}/gate_v6.0_p01
export G4VERSION="9.1"
export G4INSTALL=${OPENGATE_HOME}/geant4.9.1.p03
export LMF_HOME=${OPENGATE_HOME}/lmf_v3.0
export ROOTSYS=${OPENGATE_HOME}/root
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib:/2.0.4.2/CLHEP/lib
export PATH=$PATH:$ROOTSYS/incude:$GATEHOME/gate_v6.0_p01/bin/:$G4SYSTEM
and if call the command
source env_gate.sh
there is not errors.
But when I do the 'make' I obtain this error:
In file included from ./source/physics/include/GateSourceMgr.hh:20,
from Gate.cc:21:
./source/physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h:
Nessun file o directory
./source/physics/include/GateSourcePhaseSpace.hh:21:24: error:
TEntryList.h: Nessun file o directory
In file included from Gate.cc:33:
./source/digits_hits/include/GateROOTBasicOutput.hh:23:17: error: TH1.h:
Nessun file o directory
./source/digits_hits/include/GateROOTBasicOutput.hh:24:17: error: TH2.h:
Nessun file o directory
./source/digits_hits/include/GateROOTBasicOutput.hh:25:22: error:
TProfile.h: Nessun file o directory
./source/digits_hits/include/GateROOTBasicOutput.hh:26:21: error:
TNtuple.h: Nessun file o directory
./source/digits_hits/include/GateROOTBasicOutput.hh:28:21: error:
TBranch.h: Nessun file o directory
./source/digits_hits/include/GateROOTBasicOutput.hh:29:21: error:
TRandom.h: Nessun file o directory
Gate.cc:34:28: error: TPluginManager.h: Nessun file o directory
Entering source/arf ...
I thought that probably the problem is that I did not add the ROOT library
in the correct mode, but I tried to change some thing but without solving
the problem.
Please I search help.
Best regard
Manuele
------------------------------
Message: 2
Date: Tue, 18 Oct 2011 22:47:57 +0800
From: ??? <t891t17 at gmail.com>
To: Gate-users at lists.opengatecollaboration.org
Subject: [Gate-users] What do I open the gate?
Message-ID:
<CAL4Xt0qrgMKhYwMr-4COMhArPRA3b15YTzYNcXjAGbmqRYVuvg at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
Hi Gaters
I had success in installing Gate, but I don't know how to open it?
what should I do?
kind regards
Willie
------------------------------
Message: 3
Date: Tue, 18 Oct 2011 22:21:23 -0700 (PDT)
From: lupa euy <lupalagieuy at yahoo.com>
To: "gate-users at lists.opengatecollaboration.org"
<gate-users at lists.opengatecollaboration.org>
Subject: [Gate-users] No diagram on root
Message-ID:
<1319001683.20954.YahooMailNeo at web126110.mail.ne1.yahoo.com>
Content-Type: text/plain; charset=utf-8
Hi everyone,
I am running simulation on GATE6.1 and had achieve the root file, but when I browse through the root file, I cannot see the properties of the source x y z location, sinogram?etc.. nothing can be observed/no diagram/picture in the canvas.. And this only for coincedence events..
But for HITS events, I can observed all the properties..
I actually have disabled the hits flag, but the output file shows
command </gate/output/root/setRootHitsFlag 0> not found
Any body have any idea what is going on ????
please help......
regards
------------------------------
Message: 4
Date: Wed, 19 Oct 2011 15:44:02 +0900
From: ?? ? <takuyama at med.hokudai.ac.jp>
To: gate-users <gate-users at lists.opengatecollaboration.org>
Subject: [Gate-users] No Coincidences output
Message-ID:
<CADb2yx-Ab9hMHZFUQkXVGtc6X6_m2oUteAdpzFxfithtq9QQjg at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
Hello Gaters,
I'm trying to get the output for the coincidences, but somehow it doesn't
work at all.
I set the system as PETscanner, and the coincidence output flag as 1, so it
should give me some coincidences, but the ASCIICoincidences.dat has nothing
inside it, ROOT neither.
Singles output is working alright.
My digitizer setup is as below.
What do I need to add to this?
Thanks.
Taku Yamanaka
----
# DIGITIZER
/gate/digitizer/Singles/insert adder
/gate/digitizer/Singles/insert readout
/gate/digitizer/Singles/readout/setDepth 2 #9 for digitize PMT?
# ENERGY BLURRING
/gate/digitizer/Singles/insert blurring
/gate/digitizer/Singles/blurring/setResolution 0.19
/gate/digitizer/Singles/blurring/setEnergyOfReference 511. keV
# ENERGY WINDOW 350-600keV
/gate/digitizer/Singles/insert thresholder
/gate/digitizer/Singles/thresholder/setThreshold 10. keV
# COINCIDENCE SORTER
/gate/digitizer/Coincidences/setWindow 50. ns
/gate/digitizer/Coincidences/MultiplesPolicy takeAllGoods
/gate/digitizer/Coincidences/setDepth 2
------------------------------
Message: 5
Date: Wed, 19 Oct 2011 14:45:03 +0800
From: ??? <t891t17 at gmail.com>
To: Gate-users at lists.opengatecollaboration.org
Subject: [Gate-users] How to open the Gate?
Message-ID:
<CAL4Xt0pDxXSyjUNH5obXOdQMk-Y=q2uY=n-h1hN0Gt6bRXFWzw at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
hi gaters
I had already installing the Gate, but when I run gate I got the following
problem.
[root at IL407-WillieLin gate_v6.1]# gate
Usage: gate project-file
what should I do to run my Gate?
------------------------------
Message: 6
Date: Wed, 19 Oct 2011 08:56:15 +0200
From: Marlen Priegnitz <m.priegnitz at hzdr.de>
To: ?? ? <takuyama at med.hokudai.ac.jp>
Cc: gate-users <gate-users at lists.opengatecollaboration.org>
Subject: Re: [Gate-users] No Coincidences output
Message-ID: <4E9E748F.4000006 at hzdr.de>
Content-Type: text/plain; charset=UTF-8; format=flowed
Hello,
what kind of PETscanner do you have?
Is it a full ring or a double head scanner?
If it is a double head scanner, maybe it has something to do with
minSectorDifference?
Maybe this works: /gate/digitizer/Coincidences/minSectorDifference 1
Kind regards,
Marlen
Am 19.10.2011 08:44, schrieb ?? ?:
> Hello Gaters,
>
> I'm trying to get the output for the coincidences, but somehow it doesn't
> work at all.
> I set the system as PETscanner, and the coincidence output flag as 1, so it
> should give me some coincidences, but the ASCIICoincidences.dat has nothing
> inside it, ROOT neither.
> Singles output is working alright.
> My digitizer setup is as below.
> What do I need to add to this?
>
> Thanks.
>
> Taku Yamanaka
> ----
> # DIGITIZER
> /gate/digitizer/Singles/insert adder
> /gate/digitizer/Singles/insert readout
> /gate/digitizer/Singles/readout/setDepth 2 #9 for digitize PMT?
>
> # ENERGY BLURRING
> /gate/digitizer/Singles/insert blurring
> /gate/digitizer/Singles/blurring/setResolution 0.19
> /gate/digitizer/Singles/blurring/setEnergyOfReference 511. keV
>
> # ENERGY WINDOW 350-600keV
> /gate/digitizer/Singles/insert thresholder
> /gate/digitizer/Singles/thresholder/setThreshold 10. keV
>
> # COINCIDENCE SORTER
> /gate/digitizer/Coincidences/setWindow 50. ns
> /gate/digitizer/Coincidences/MultiplesPolicy takeAllGoods
> /gate/digitizer/Coincidences/setDepth 2
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
------------------------------
Message: 7
Date: Wed, 19 Oct 2011 00:57:44 -0700 (PDT)
From: lupa euy <lupalagieuy at yahoo.com>
To: Marlen Priegnitz <m.priegnitz at hzdr.de>, ?? ?
<takuyama at med.hokudai.ac.jp>
Cc: gate-users <gate-users at lists.opengatecollaboration.org>
Subject: Re: [Gate-users] No Coincidences output
Message-ID:
<1319011064.51789.YahooMailNeo at web126101.mail.ne1.yahoo.com>
Content-Type: text/plain; charset=utf-8
hi there..
?
I have the same problem.. and mine is a full ring scanner. Any suggestions?
?
regards
?
________________________________
From: Marlen Priegnitz <m.priegnitz at hzdr.de>
To: ?? ? <takuyama at med.hokudai.ac.jp>
Cc: gate-users <gate-users at lists.opengatecollaboration.org>
Sent: Wednesday, October 19, 2011 3:56 PM
Subject: Re: [Gate-users] No Coincidences output
Hello,
what kind of PETscanner do you have?
Is it a full ring or a double head scanner?
If it is a double head scanner, maybe it has something to do with
minSectorDifference?
Maybe this works:? /gate/digitizer/Coincidences/minSectorDifference 1
Kind regards,
Marlen
Am 19.10.2011 08:44, schrieb ?? ?:
> Hello Gaters,
>
> I'm trying to get the output for the coincidences, but somehow it doesn't
> work at all.
> I set the system as PETscanner, and the coincidence output flag as 1, so it
> should give me some coincidences, but the ASCIICoincidences.dat has nothing
> inside it, ROOT neither.
> Singles output is working alright.
> My digitizer setup is as below.
> What do I need to add to this?
>
> Thanks.
>
> Taku Yamanaka
> ----
> # DIGITIZER
> /gate/digitizer/Singles/insert? ? ? ? ? ? ? ? adder
> /gate/digitizer/Singles/insert? ? ? ? ? ? ? ? readout
> /gate/digitizer/Singles/readout/setDepth? ? 2 #9 for digitize PMT?
>
> # ENERGY BLURRING
> /gate/digitizer/Singles/insert blurring
> /gate/digitizer/Singles/blurring/setResolution? ? ? ? ? ? 0.19
> /gate/digitizer/Singles/blurring/setEnergyOfReference? ? 511. keV
>
> # ENERGY WINDOW 350-600keV
> /gate/digitizer/Singles/insert? ? ? ? ? ? ? ? ? ? ? ? thresholder
> /gate/digitizer/Singles/thresholder/setThreshold? ? 10. keV
>
> # COINCIDENCE SORTER
> /gate/digitizer/Coincidences/setWindow? ? 50. ns
> /gate/digitizer/Coincidences/MultiplesPolicy? ? takeAllGoods
> /gate/digitizer/Coincidences/setDepth? ? 2
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
_______________________________________________
Gate-users mailing list
Gate-users at lists.opengatecollaboration.org
http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
------------------------------
Message: 8
Date: Wed, 19 Oct 2011 16:01:47 +0800
From: ??? <t891t17 at gmail.com>
To: Gate-users at lists.opengatecollaboration.org
Subject: [Gate-users] question in open GATE
Message-ID:
<CAL4Xt0pmd7H2erATfXHgz72+eJ17YqeUOxmb2bj+fBtu_W60eA at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
hi gaters
I want to open my gate, but I get the following response.
[root at IL407-WillieLin benchSPECT]# gate benchSPECT.mac
Generating Ada files...
Couldn't generate Ada code. Exiting.
What should I do?
King regards
Willie
------------------------------
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