[Gate-users] Gate v6 compiling problem : undefined reference

[Ghania Taleb]

Dear Gaters,

I am trying to install Gatev6 on an Ubuntu 11.04 64 bits machine (gcc 4.5 root 5.30 ). First everything was working fine (benchmarks) then I added lmfv3,0 and ecat7 libraries and reinstalled root and compiling gives me this :


 Compiling GateVSourceVoxelReaderMessenger.cc ...
Compiling GateVSourceVoxelTranslator.cc ...
source/physics finished
Creating shared library tmp/Linux-g++/Gate/libGate.so ...
Creating/replacing object files in ./tmp/Linux-g++/Gate/libGate.a ...
ar: creating ./tmp/Linux-g++/Gate/libGate.a
Compiling Gate.cc ...
In file included from ./source/digits_hits/include/GateUserActions.hh:40:0,
                 from Gate.cc:17:
/home/florian/gate/geant4.9.4.p02/source/tracking/include/G4VTrajectory.hh:86:17: warning: ‘virtual void G4VTrajectory::ShowTrajectory(std::ostream&) const’ was hidden
./source/digits_hits/include/GateTrajectory.hh:75:17: warning:   by ‘virtual void GateTrajectory::ShowTrajectory() const’
Using global libraries ...
Linking Gate
./tmp/Linux-g++/Gate/exe/Gate.o: In function `main':
Gate.cc:(.text+0x2fb4): undefined reference to `GateUserActions::GateUserActions(GateRunManager*, GateRecorderBase*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVImageActor::GateVImageActor(G4String, int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVImageActor::GetIndexFromStepPosition(GateVVolume const*, G4Step const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistributionArray::Clear()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::SetParticleName(G4String)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetVertexPosition()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistributionArray::MaxY() const'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateUserActions::EnableTimeStudyForSteps(G4String)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrajectoryNavigator::GateTrajectoryNavigator()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToSinoAccel::GateToSinoAccel(G4String const&, GateOutputMgr*, GateVSystem*, DigiMode)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetMomentum()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistribution::GateVDistribution(G4String const&)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrajectoryNavigator::FindPhotonID(int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVImageActor::SetResolution(CLHEP::Hep3Vector)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVImageActor::UserSteppingAction(GateVVolume const*, G4Step const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetParentID()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToInterfile::GateToInterfile(G4String const&, GateOutputMgr*, GateSPECTHeadSystem*, DigiMode)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistributionArray::InsertPoint(double)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateUserActions::PreUserTrackingAction(G4Track const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateUserActions::EnableTimeStudy(G4String)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetLocalTime()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToProjectionSet::GateToProjectionSet(G4String const&, GateOutputMgr*, GateVSystem*, DigiMode)'const'
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./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::~GateTrack()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::SetRunID(int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVImageActor::PostUserTrackingAction(GateVVolume const*, G4Track const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetEventID()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrajectoryNavigator::SetTrajectoryContainer(G4TrajectoryContainer*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistributionArray::~GateVDistributionArray()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GateTrack(GateTrack&)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistribution::~GateVDistribution()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetVertexVolumeName()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrajectoryNavigator::FindSourcePosition()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToRoot::GetCurrentTracksData()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `ComptonRayleighData::ComptonRayleighData()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVActor::Save()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for GateVOutputModule'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDistributionArray::Value(double) const'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetMomentumDirection()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for GateVImageActor'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::SetEventID(int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToRoot::OpenTracksFile()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToRoot::GateToRoot(G4String const&, GateOutputMgr*, DigiMode)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVActor::GateVActor(G4String, int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for GateVDigiMakerModule'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `ComptonRayleighData::ComptonRayleighData(ComptonRayleighData&)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateUserActions::EndOfEventAction(G4Event const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrajectoryNavigator::FindPrimaryID(int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateUpholder::GateUpholder(GatePulseProcessorChain*, G4String const&, double)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `typeinfo for GateToProjectionSet'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVActor::SetSaveFilename(G4String)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVActor::~GateVActor()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateUserActions::PostUserTrackingAction(G4Track const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVDigiMakerModule::~GateVDigiMakerModule()'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVActor::AttachToVolume(G4String)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateToRoot::GetPHData(ComptonRayleighData&)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateTrack::GetTrackID()'
collect2: ld returned 1 exit status
make: *** [bin/Linux-g++/Gate] Error 1


I have seen that other users faced the same problem but did not get any answer. 
Thank you for ANY help.
Cheers.
Dounia Taleb.