[Gate-users] Display projection

[Rajaram, Ramya (H USA)]

Hi Yanfei,

The .sin file is 16-bit unsigned (little-endian byte) and ImageJ (free
from NIH) can open it. You can also use Matlab to read it - use fopen
and fread commands. I think the name 'interfile' is not quite correct as
the projection image is not interfile format.
Hope that helps,
Ramya

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Today's Topics:

   1. Cluster tool - ROOT file merging (didar talat)
   2. Display projection (Yanfei Mao)


----------------------------------------------------------------------

Message: 1
Date: Thu, 2 Jun 2011 18:20:04 +0300
From: didar talat <didartalat at gmail.com>
To: gate-users at lists.opengatecollaboration.org
Subject: [Gate-users] Cluster tool - ROOT file merging
Message-ID: <BANLkTikwtMw9ybJhrtz4BBFYDxcWev3YFA at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1

Dear all,


I was able to split my macro and run my simulations on a cluster, but I
could not merge my root files. I get the following error:

Error in <TFile::TFile>: file root2.root does not exist         (I don't
get
the message for root1.root)
Not a readable file root2.root - exit!

I checked the root2.root output file using ROOT and everything seems to
be
normal.

What can be the problem?

Any suggestion and help will be appreciated!

Thank you,

Didar

-- 
Didar Talat
Research Assistant, PhD Candidate

Bogazici University
Kandilli Campus
Institute of Biomedical Engineering
34684 Cengelkoy - Istanbul / Turkey

Office:+90 216 516 34 76
Fax   :+90 216 516 34 79


------------------------------

Message: 2
Date: Thu, 2 Jun 2011 12:19:51 -0700 (PDT)
From: Yanfei Mao <yanfei_mao017 at yahoo.com>
To: GATE <gate-users at lists.opengatecollaboration.org>
Subject: [Gate-users] Display projection
Message-ID: <991749.94764.qm at web45209.mail.sp1.yahoo.com>
Content-Type: text/plain; charset=iso-8859-1

Hello all,

I launch the example benchSPECT and get two files, a .hdr and a .sin.
How can I view the .sin file? What's the precision of .sin file, uint16
or float? I try matlab's interfileread function
img=interfileread('projec.hdr'), but it shows?Invalid expression in line
29 of projec.hdr.
line 29 of projec.hdr:? !scaling factor (mm/pixel) [1] := 0.904

When I use fread, all the data I get is zero. How can I get the
projection image?

Thank you!
Yanfei Mao

------------------------------

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