[Gate-users] Problem installing GATE
Jasper C
jaspercwork at gmail.com
Fri Jul 1 10:43:29 CEST 2011
Hello all,
I'm a new user trying to install GATE on an Ubuntu 10.04 LTS system.
I have followed the install instructions at:
http://wiki.opengatecollaboration.org/index.php/InstallationGuide
and have been able to successfully install the prerequisite packages.
However the make command fails when I try to install GATE. I have
attached a file wtih the last section of the terminal output available
to me, and the following are the very last lines:
----------------------------------------------------------
In file included from Gate.cc:35:
./source/digits_hits/include/GateHitFileReader.hh: At global scope:
./source/digits_hits/include/GateHitFileReader.hh:102: error: ISO C++
forbids declaration of ‘TFile’ with no type
./source/digits_hits/include/GateHitFileReader.hh:102: error: expected
‘;’ before ‘*’ token
./source/digits_hits/include/GateHitFileReader.hh:104: error: ISO C++
forbids declaration of ‘TTree’ with no type
./source/digits_hits/include/GateHitFileReader.hh:104: error: expected
‘;’ before ‘*’ token
./source/digits_hits/include/GateHitFileReader.hh:105: error: ‘Stat_t’
does not name a type
Gate.cc: In function ‘void DecodeArguments(int, char**)’:
Gate.cc:127: error: ‘gROOT’ was not declared in this scope
Gate.cc: In function ‘int main(int, char**)’:
Gate.cc:190: error: ‘gROOT’ was not declared in this scope
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Units/PhysicalConstants.h:
At global scope:
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Units/PhysicalConstants.h:80:
warning: ‘CLHEP::electron_charge’ defined but not used
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Random/Randomize.h:67:
warning: ‘CLHEP::HepRandomGenActive’ defined but not used
make: *** [tmp/Linux-g++/Gate/exe/Gate.o] Error 1
-------------------------------------------------------------------------------
The above (and attachement) are from when I tried to install GATE v6.1
with the following:
Clhep v2.1.0.1
Geant4 v9.4p02
Root v5.30.00
I have also tried to install GATE v6.0.1 using the following:
Clhep v2.0.4.2
Geant4 v9.2p0
Root v5.28.00c
which resulted in the same error messages.
Could anyone advise on what I should do? Assistance would be greatly
appreciated.
Thank you!
-------------- next part --------------
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateSourceMgr.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateSourceMgr.cc:19:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateSourceLinacBeamMessenger.cc ...
In file included from ../physics/include/GateSourceLinacBeamMessenger.hh:18,
from src/GateSourceLinacBeamMessenger.cc:12:
../physics/include/GateSourceLinacBeam.hh:21:19: error: TROOT.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:22:19: error: TFile.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:23:18: error: TH1D.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:24:19: error: TMath.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:25:18: error: TKey.h: No such file or directory
Making dependency for file src/GateSourceLinacBeam.cc ...
In file included from src/GateSourceLinacBeam.cc:11:
../physics/include/GateSourceLinacBeam.hh:21:19: error: TROOT.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:22:19: error: TFile.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:23:18: error: TH1D.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:24:19: error: TMath.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:25:18: error: TKey.h: No such file or directory
Making dependency for file src/GateSingleScatteringPB.cc ...
Making dependency for file src/GateSingleParticleSourceMessenger.cc ...
Making dependency for file src/GateScintillationPB.cc ...
Making dependency for file src/GateRTVPhantomMessenger.cc ...
Making dependency for file src/GateRTVPhantom.cc ...
Making dependency for file src/GateRTPhantomMgrMessenger.cc ...
Making dependency for file src/GateRTPhantomMgr.cc ...
Making dependency for file src/GateRTPhantomMessenger.cc ...
Making dependency for file src/GateRTPhantom.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateRTPhantom.cc:6:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateRayleighPenelopePB.cc ...
Making dependency for file src/GateRayleighPB.cc ...
Making dependency for file src/GateRayleighLowEPB.cc ...
Making dependency for file src/GateRadioactiveDecayPB.cc ...
Making dependency for file src/GatePulseProcessorMessenger.cc ...
Making dependency for file src/GatePulseProcessorChainMessenger.cc ...
Making dependency for file src/GatePulseProcessorChain.cc ...
Making dependency for file src/GateProtonInelasticPB.cc ...
Making dependency for file src/GatePositronAnnihilationStdPB.cc ...
Making dependency for file src/GatePositronAnnihilationPenelopePB.cc ...
Making dependency for file src/GatePositronAnnihilationPB.cc ...
Making dependency for file src/GatePositronAnnihilation.cc ...
Making dependency for file src/GatePionPlusInelasticPB.cc ...
Making dependency for file src/GatePionMinusInelasticPB.cc ...
Making dependency for file src/GatePhysicsListMessenger.cc ...
Making dependency for file src/GatePhysicsList.cc ...
Making dependency for file src/GatePhotoElectricPenelopePB.cc ...
Making dependency for file src/GatePhotoElectricPB.cc ...
Making dependency for file src/GatePhotoElectricMessenger.cc ...
Making dependency for file src/GatePhotoElectricLowEPB.cc ...
Making dependency for file src/GatePETVRTSettings.cc ...
Making dependency for file src/GateOpticalRayleighPB.cc ...
Making dependency for file src/GateOpticalBoundaryPB.cc ...
Making dependency for file src/GateOpticalAbsorptionPB.cc ...
Making dependency for file src/GateNeutronInelasticPB.cc ...
Making dependency for file src/GateMuPairProductionPB.cc ...
Making dependency for file src/GateMultiScatteringMessenger.cc ...
Making dependency for file src/GateMultipleScatteringPB.cc ...
Making dependency for file src/GateMuIonisationPB.cc ...
Making dependency for file src/GateMuBremsstrahlungPB.cc ...
Making dependency for file src/GateMaterialTableToProductionCutsTable.cc ...
Making dependency for file src/GateListOfHadronicModels.cc ...
Making dependency for file src/GateIonIonisationPB.cc ...
Making dependency for file src/GateIonInelasticPB.cc ...
Making dependency for file src/GatehMultipleScatteringPB.cc ...
Making dependency for file src/GateHadronIonisationPB.cc ...
Making dependency for file src/GateHadronIonisationLowEPB.cc ...
Making dependency for file src/GateHadronIonisationLowEMessenger.cc ...
Making dependency for file src/GateHadronIonIonisationProcessMessenger.cc ...
Making dependency for file src/GateHadronicStandardProcessMessenger.cc ...
Making dependency for file src/GateHadronElasticProcessPB.cc ...
Making dependency for file src/GateHadronCapturePB.cc ...
Making dependency for file src/GateGenericWrapperProcess.cc ...
Making dependency for file src/GateGammaConversionPenelopePB.cc ...
Making dependency for file src/GateGammaConversionPB.cc ...
Making dependency for file src/GateGammaConversionLowEPB.cc ...
Making dependency for file src/GateFissionPB.cc ...
Making dependency for file src/GateFictitiousProcessPB.cc ...
Making dependency for file src/GateFictitiousFastSimulationModel.cc ...
Making dependency for file src/GateFastI124.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateFastI124.cc:14:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateFakePhysicsList.cc ...
Making dependency for file src/GateeMultipleScatteringPB.cc ...
Making dependency for file src/GateEMStandardProcessMessenger.cc ...
Making dependency for file src/GateElectronIonisationPenelopePB.cc ...
Making dependency for file src/GateElectronIonisationPB.cc ...
Making dependency for file src/GateElectronIonisationLowEPB.cc ...
Making dependency for file src/GateDecayPB.cc ...
Making dependency for file src/GateCrossSectionsTable.cc ...
Making dependency for file src/GateComptonPenelopePB.cc ...
Making dependency for file src/GateComptonPB.cc ...
Making dependency for file src/GateComptonLowEPB.cc ...
Making dependency for file src/GateCoincidencePulseProcessorChainMessenger.cc ...
Making dependency for file src/GateCoincidencePulseProcessorChain.cc ...
Making dependency for file src/GateBremsstrahlungPenelopePB.cc ...
Making dependency for file src/GateBremsstrahlungPB.cc ...
Making dependency for file src/GateBremsstrahlungLowEPB.cc ...
Making dependency for file src/GateBinaryCascade.cc ...
Making dependency for file src/GateBackToBack.cc ...
Making dependency for file src/GateVSourceVoxelReader.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateVSourceVoxelReader.cc:20:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateVSource.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateVSource.cc:24:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
In file included from src/GateVSource.cc:27:
../digits_hits/include/GateToRoot.hh:19:17: error: TH1.h: No such file or directory
../digits_hits/include/GateToRoot.hh:20:17: error: TH2.h: No such file or directory
../digits_hits/include/GateToRoot.hh:21:17: error: TH3.h: No such file or directory
../digits_hits/include/GateToRoot.hh:22:21: error: TNtuple.h: No such file or directory
../digits_hits/include/GateToRoot.hh:23:21: error: TRandom.h: No such file or directory
../digits_hits/include/GateToRoot.hh:24:24: error: TDirectory.h: No such file or directory
../digits_hits/include/GateToRoot.hh:26:21: error: TBranch.h: No such file or directory
Making dependency for file src/GateSourceTPSPencilBeamMessenger.cc ...
In file included from ../physics/include/GateSourceTPSPencilBeam.hh:27,
from src/GateSourceTPSPencilBeamMessenger.cc:15:
../physics/include/GateSourcePencilBeam.hh:35:19: error: TMath.h: No such file or directory
Making dependency for file src/GateSourceTPSPencilBeam.cc ...
In file included from ../physics/include/GateSourceTPSPencilBeam.hh:27,
from src/GateSourceTPSPencilBeam.cc:17:
../physics/include/GateSourcePencilBeam.hh:35:19: error: TMath.h: No such file or directory
Making dependency for file src/GateSourcePhaseSpaceMessenger.cc ...
In file included from src/GateSourcePhaseSpaceMessenger.cc:15:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateSourcePhaseSpace.cc ...
In file included from src/GateSourcePhaseSpace.cc:13:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateSourcePencilBeamMessenger.cc ...
In file included from src/GateSourcePencilBeamMessenger.cc:15:
../physics/include/GateSourcePencilBeam.hh:35:19: error: TMath.h: No such file or directory
Making dependency for file src/GateSourcePencilBeam.cc ...
In file included from src/GateSourcePencilBeam.cc:17:
../physics/include/GateSourcePencilBeam.hh:35:19: error: TMath.h: No such file or directory
Making dependency for file src/GateSourceMgrMessenger.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from ../physics/include/GateSourceMgrMessenger.hh:17,
from src/GateSourceMgrMessenger.cc:12:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateSourceMgr.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateSourceMgr.cc:19:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateSourceLinacBeamMessenger.cc ...
In file included from ../physics/include/GateSourceLinacBeamMessenger.hh:18,
from src/GateSourceLinacBeamMessenger.cc:12:
../physics/include/GateSourceLinacBeam.hh:21:19: error: TROOT.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:22:19: error: TFile.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:23:18: error: TH1D.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:24:19: error: TMath.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:25:18: error: TKey.h: No such file or directory
Making dependency for file src/GateSourceLinacBeam.cc ...
In file included from src/GateSourceLinacBeam.cc:11:
../physics/include/GateSourceLinacBeam.hh:21:19: error: TROOT.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:22:19: error: TFile.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:23:18: error: TH1D.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:24:19: error: TMath.h: No such file or directory
../physics/include/GateSourceLinacBeam.hh:25:18: error: TKey.h: No such file or directory
Making dependency for file src/GateRTPhantom.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateRTPhantom.cc:6:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Making dependency for file src/GateFastI124.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateFastI124.cc:14:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
Compiling GateBackToBack.cc ...
Compiling GateBinaryCascade.cc ...
Compiling GateBremsstrahlungLowEPB.cc ...
Compiling GateBremsstrahlungPB.cc ...
src/GateBremsstrahlungPB.cc: In member function ‘virtual bool GateBremsstrahlungPB::IsModelApplicable(G4String, G4ParticleDefinition*)’:
src/GateBremsstrahlungPB.cc:60: warning: comparison between signed and unsigned integer expressions
Compiling GateBremsstrahlungPenelopePB.cc ...
Compiling GateCoincidencePulseProcessorChain.cc ...
Compiling GateCoincidencePulseProcessorChainMessenger.cc ...
Compiling GateComptonLowEPB.cc ...
Compiling GateComptonPB.cc ...
src/GateComptonPB.cc: In member function ‘virtual bool GateComptonPB::IsModelApplicable(G4String, G4ParticleDefinition*)’:
src/GateComptonPB.cc:61: warning: comparison between signed and unsigned integer expressions
Compiling GateComptonPenelopePB.cc ...
Compiling GateCrossSectionsTable.cc ...
Compiling GateDecayPB.cc ...
Compiling GateElectronIonisationLowEPB.cc ...
Compiling GateElectronIonisationPB.cc ...
src/GateElectronIonisationPB.cc: In member function ‘virtual bool GateElectronIonisationPB::IsModelApplicable(G4String, G4ParticleDefinition*)’:
src/GateElectronIonisationPB.cc:62: warning: comparison between signed and unsigned integer expressions
Compiling GateElectronIonisationPenelopePB.cc ...
Compiling GateEMStandardProcessMessenger.cc ...
Compiling GateeMultipleScatteringPB.cc ...
Compiling GateFakePhysicsList.cc ...
Compiling GateFastI124.cc ...
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateFastI124.cc:14:
../physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
../physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
In file included from ../physics/include/GateSourceMgr.hh:20,
from src/GateFastI124.cc:14:
../physics/include/GateSourcePhaseSpace.hh:84: error: ISO C++ forbids declaration of ‘TChain’ with no type
../physics/include/GateSourcePhaseSpace.hh:84: error: expected ‘;’ before ‘*’ token
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Units/PhysicalConstants.h:80: warning: ‘CLHEP::electron_charge’ defined but not used
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Random/Randomize.h:67: warning: ‘CLHEP::HepRandomGenActive’ defined but not used
make[1]: *** [../../tmp/Linux-g++/Gate/GateFastI124.o] Error 1
source/physics finished
Creating shared library tmp/Linux-g++/Gate/libGate.so ...
Compiling Gate.cc ...
In file included from ./source/physics/include/GateSourceMgr.hh:20,
from Gate.cc:21:
./source/physics/include/GateSourcePhaseSpace.hh:14:19: error: TROOT.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:15:19: error: TFile.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:16:19: error: TTree.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:17:20: error: TChain.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:18:18: error: TH1D.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:19:19: error: TMath.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:20:18: error: TKey.h: No such file or directory
./source/physics/include/GateSourcePhaseSpace.hh:21:24: error: TEntryList.h: No such file or directory
In file included from Gate.cc:33:
./source/digits_hits/include/GateROOTBasicOutput.hh:23:17: error: TH1.h: No such file or directory
./source/digits_hits/include/GateROOTBasicOutput.hh:24:17: error: TH2.h: No such file or directory
./source/digits_hits/include/GateROOTBasicOutput.hh:25:22: error: TProfile.h: No such file or directory
./source/digits_hits/include/GateROOTBasicOutput.hh:26:21: error: TNtuple.h: No such file or directory
./source/digits_hits/include/GateROOTBasicOutput.hh:28:21: error: TBranch.h: No such file or directory
./source/digits_hits/include/GateROOTBasicOutput.hh:29:21: error: TRandom.h: No such file or directory
Gate.cc:34:28: error: TPluginManager.h: No such file or directory
In file included from ./source/digits_hits/include/GateUserActions.hh:40,
from Gate.cc:17:
/home/jasper/gate/geant4.9.4.p02/include/G4VTrajectory.hh:86: warning: ‘virtual void G4VTrajectory::ShowTrajectory(std::ostream&) const’ was hidden
./source/digits_hits/include/GateTrajectory.hh:75: warning: by ‘virtual void GateTrajectory::ShowTrajectory() const’
In file included from ./source/physics/include/GateSourceMgr.hh:20,
from Gate.cc:21:
./source/physics/include/GateSourcePhaseSpace.hh:84: error: ISO C++ forbids declaration of ‘TChain’ with no type
./source/physics/include/GateSourcePhaseSpace.hh:84: error: expected ‘;’ before ‘*’ token
In file included from Gate.cc:33:
./source/digits_hits/include/GateROOTBasicOutput.hh:61: error: ISO C++ forbids declaration of ‘TFile’ with no type
./source/digits_hits/include/GateROOTBasicOutput.hh:61: error: expected ‘;’ before ‘*’ token
./source/digits_hits/include/GateROOTBasicOutput.hh:64: error: ISO C++ forbids declaration of ‘Float_t’ with no type
./source/digits_hits/include/GateROOTBasicOutput.hh:64: error: expected ‘;’ before ‘*’ token
./source/digits_hits/include/GateROOTBasicOutput.hh:65: error: ‘Float_t’ does not name a type
./source/digits_hits/include/GateROOTBasicOutput.hh:66: error: ‘Float_t’ does not name a type
./source/digits_hits/include/GateROOTBasicOutput.hh:67: error: ‘Float_t’ does not name a type
./source/digits_hits/include/GateROOTBasicOutput.hh:68: error: ‘Float_t’ does not name a type
./source/digits_hits/include/GateROOTBasicOutput.hh:69: error: ‘Int_t’ does not name a type
./source/digits_hits/include/GateROOTBasicOutput.hh:71: error: ISO C++ forbids declaration of ‘TTree’ with no type
./source/digits_hits/include/GateROOTBasicOutput.hh:71: error: expected ‘;’ before ‘*’ token
./source/digits_hits/include/GateROOTBasicOutput.hh:72: error: ‘Int_t’ does not name a type
In file included from ./source/digits_hits/include/GateHitFileReader.hh:30,
from Gate.cc:35:
./source/general/include/GateRootDefs.hh:142: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:143: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:144: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:145: error: ‘Double_t’ does not name a type
./source/general/include/GateRootDefs.hh:146: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:147: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:148: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:149: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:150: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:151: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:152: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:153: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:154: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:155: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:156: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:157: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:158: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:159: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:160: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:161: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:162: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:163: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:164: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:165: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:166: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh: In member function ‘G4double GateRootHitBuffer::GetTime() const’:
./source/general/include/GateRootDefs.hh:72: error: invalid operands of types ‘time_t(time_t*)throw ()’ and ‘const double’ to binary ‘operator*’
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetTime(G4double)’:
./source/general/include/GateRootDefs.hh:75: error: assignment of function ‘time_t time(time_t*)’
./source/general/include/GateRootDefs.hh:75: error: cannot convert ‘G4double’ to ‘time_t(time_t*)throw ()’ in assignment
./source/general/include/GateRootDefs.hh: In member function ‘G4double GateRootHitBuffer::GetEdep() const’:
./source/general/include/GateRootDefs.hh:79: error: ‘edep’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetEdep(G4double)’:
./source/general/include/GateRootDefs.hh:82: error: ‘edep’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘G4double GateRootHitBuffer::GetStepLength() const’:
./source/general/include/GateRootDefs.hh:86: error: ‘stepLength’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetStepLength(G4double)’:
./source/general/include/GateRootDefs.hh:89: error: ‘stepLength’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘G4ThreeVector GateRootHitBuffer::GetPos() const’:
./source/general/include/GateRootDefs.hh:93: error: ‘posX’ was not declared in this scope
./source/general/include/GateRootDefs.hh:93: error: ‘posY’ was not declared in this scope
./source/general/include/GateRootDefs.hh:93: error: ‘posZ’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetPos(const G4ThreeVector&)’:
./source/general/include/GateRootDefs.hh:97: error: ‘posX’ was not declared in this scope
./source/general/include/GateRootDefs.hh:98: error: ‘posY’ was not declared in this scope
./source/general/include/GateRootDefs.hh:99: error: ‘posZ’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘G4ThreeVector GateRootHitBuffer::GetLocalPos() const’:
./source/general/include/GateRootDefs.hh:104: error: ‘localPosX’ was not declared in this scope
./source/general/include/GateRootDefs.hh:104: error: ‘localPosY’ was not declared in this scope
./source/general/include/GateRootDefs.hh:104: error: ‘localPosZ’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetLocalPos(const G4ThreeVector&)’:
./source/general/include/GateRootDefs.hh:108: error: ‘localPosX’ was not declared in this scope
./source/general/include/GateRootDefs.hh:109: error: ‘localPosY’ was not declared in this scope
./source/general/include/GateRootDefs.hh:110: error: ‘localPosZ’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘G4ThreeVector GateRootHitBuffer::GetSourcePos() const’:
./source/general/include/GateRootDefs.hh:115: error: ‘sourcePosX’ was not declared in this scope
./source/general/include/GateRootDefs.hh:115: error: ‘sourcePosY’ was not declared in this scope
./source/general/include/GateRootDefs.hh:115: error: ‘sourcePosZ’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetSourcePos(const G4ThreeVector&)’:
./source/general/include/GateRootDefs.hh:119: error: ‘sourcePosX’ was not declared in this scope
./source/general/include/GateRootDefs.hh:120: error: ‘sourcePosY’ was not declared in this scope
./source/general/include/GateRootDefs.hh:121: error: ‘sourcePosZ’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘G4double GateRootHitBuffer::GetAxialPos() const’:
./source/general/include/GateRootDefs.hh:126: error: ‘axialPos’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetAxialPos(G4double)’:
./source/general/include/GateRootDefs.hh:129: error: ‘axialPos’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘G4double GateRootHitBuffer::GetRotationAngle() const’:
./source/general/include/GateRootDefs.hh:133: error: ‘rotationAngle’ was not declared in this scope
./source/general/include/GateRootDefs.hh: In member function ‘void GateRootHitBuffer::SetRotationAngle(G4double)’:
./source/general/include/GateRootDefs.hh:136: error: ‘rotationAngle’ was not declared in this scope
./source/general/include/GateRootDefs.hh: At global scope:
./source/general/include/GateRootDefs.hh:182: error: expected class-name before ‘{’ token
./source/general/include/GateRootDefs.hh:191: error: ‘TTree’ has not been declared
./source/general/include/GateRootDefs.hh: In constructor ‘GateHitTree::GateHitTree(const G4String&, const G4String&)’:
./source/general/include/GateRootDefs.hh:186: error: class ‘GateHitTree’ does not have any field named ‘TTree’
./source/general/include/GateRootDefs.hh: At global scope:
./source/general/include/GateRootDefs.hh:217: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:218: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:219: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:220: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:221: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:222: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:223: error: ‘Double_t’ does not name a type
./source/general/include/GateRootDefs.hh:224: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:225: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:226: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:227: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:228: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:229: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:230: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:231: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:232: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:233: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:234: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:235: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:236: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:251: error: expected class-name before ‘{’ token
./source/general/include/GateRootDefs.hh: In constructor ‘GateSingleTree::GateSingleTree(const G4String&, const G4String&)’:
./source/general/include/GateRootDefs.hh:255: error: class ‘GateSingleTree’ does not have any field named ‘TTree’
./source/general/include/GateRootDefs.hh: At global scope:
./source/general/include/GateRootDefs.hh:288: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:289: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:290: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:292: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:293: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:294: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:295: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:296: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:297: error: ‘Double_t’ does not name a type
./source/general/include/GateRootDefs.hh:298: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:299: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:300: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:301: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:302: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:303: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:304: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:305: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:306: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:307: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:308: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:310: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:311: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:312: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:313: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:314: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:315: error: ‘Double_t’ does not name a type
./source/general/include/GateRootDefs.hh:316: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:317: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:318: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:319: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:320: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:321: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:322: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:323: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:324: error: ‘Int_t’ does not name a type
./source/general/include/GateRootDefs.hh:325: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:326: error: ‘Char_t’ does not name a type
./source/general/include/GateRootDefs.hh:328: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:329: error: ‘Float_t’ does not name a type
./source/general/include/GateRootDefs.hh:344: error: expected class-name before ‘{’ token
./source/general/include/GateRootDefs.hh: In constructor ‘GateCoincTree::GateCoincTree(const G4String&, const G4String&)’:
./source/general/include/GateRootDefs.hh:348: error: class ‘GateCoincTree’ does not have any field named ‘TTree’
In file included from Gate.cc:35:
./source/digits_hits/include/GateHitFileReader.hh: At global scope:
./source/digits_hits/include/GateHitFileReader.hh:102: error: ISO C++ forbids declaration of ‘TFile’ with no type
./source/digits_hits/include/GateHitFileReader.hh:102: error: expected ‘;’ before ‘*’ token
./source/digits_hits/include/GateHitFileReader.hh:104: error: ISO C++ forbids declaration of ‘TTree’ with no type
./source/digits_hits/include/GateHitFileReader.hh:104: error: expected ‘;’ before ‘*’ token
./source/digits_hits/include/GateHitFileReader.hh:105: error: ‘Stat_t’ does not name a type
Gate.cc: In function ‘void DecodeArguments(int, char**)’:
Gate.cc:127: error: ‘gROOT’ was not declared in this scope
Gate.cc: In function ‘int main(int, char**)’:
Gate.cc:190: error: ‘gROOT’ was not declared in this scope
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Units/PhysicalConstants.h: At global scope:
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Units/PhysicalConstants.h:80: warning: ‘CLHEP::electron_charge’ defined but not used
/home/jasper/gate/clhep_2.1.0.1/include/CLHEP/Random/Randomize.h:67: warning: ‘CLHEP::HepRandomGenActive’ defined but not used
make: *** [tmp/Linux-g++/Gate/exe/Gate.o] Error 1
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