[Gate-users] LMF output issues

dounia84 at aol.com dounia84 at aol.com
Wed Sep 22 10:47:18 CEST 2010



 Hello Gaters,

I wrote an email yesterday about problem installing Gate with LMF, eventually I managed this. But now the problem is when I try the example given with LMF EXE_01. When I type 
./EXE_01

This is what I get:    


         Example 1   
    Creation of your first LMF file
 
 This example allows you to create a complete
 binary LMF file, with .ccs extension. The values
 of generated records are not pertinent, but
 it is just a pedagogic example. The output of
 this example is called test1_ex1.ccs
 You can find in this directory test1_ex1.cch,
 the associated ascii file. You can read and/or process 
 this couple of files with Example 4.



What do you want to store ?
1 : event record 
  (y / n) : n
**** ERROR !!! TRY AGAIN ****


 It is like character encoding is not recognized.

Moreover Gate V4 does not recognize LMF output either (***** COMMAND NOT FOUND </gate/output/lmf/enable> *****

***** Batch is interupted!! *****)   even though LMF seems to be installed. I recomiled Gate several times after I have tried lots of version of lmf v3( with etags, the one modified by S. Burg,...) 
but I still cannot use the ouput. I hope someone can help me as I am stuck at this step for months now.

Cheers,

The current value of G4INSTALL is: /home/dounia/gate_v4.0.0/geant4.9.1.p03
The current value of G4VERSION is: 9.1

Launching Geant4 configuration script /home/dounia/gate_v4.0.0/geant4.9.1.p03/env.sh

On this machine the G4SYSTEM=Linux-g++
On this machine the G4INSTALL=/home/dounia/gate_v4.0.0/geant4.9.1.p03
On this machine the G4INCLUDE=/home/dounia/gate_v4.0.0/geant4.9.1.p03/include/
On this machine the G4LIB=/home/dounia/gate_v4.0.0/geant4.9.1.p03/lib
On this machine the G4LEVELGAMMADATA=/home/dounia/gate_v4.0.0/geant4.9.1.p03/data/PhotonEvaporation2.0
On this machine the G4RADIOACTIVEDATA=/home/dounia/gate_v4.0.0/geant4.9.1.p03/data/RadioactiveDecay3.2
On this machine the G4LEDATA=/home/dounia/gate_v4.0.0/geant4.9.1.p03/data/G4EMLOW5.1
On this machine the G4NEUTRONHPDATA=/home/dounia/gate_v4.0.0/geant4.9.1.p03/data/G4NDL3.12
On this machine the G4ABLADATA=/home/dounia/gate_v4.0.0/geant4.9.1.p03/data/G4ABLA3.0
On this machine the CLHEP_BASE_DIR=/home/dounia/gate_v4.0.0/2.0.3.2/CLHEP
On this machine the CLHEP_INCLUDE_DIR=/home/dounia/gate_v4.0.0/2.0.3.2/CLHEP/include
On this machine the CLHEP_LIB_DIR=/home/dounia/gate_v4.0.0/2.0.3.2/CLHEP/lib
On this machine the CLHEP_LIB=CLHEP
On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
On this machine the G4VIS_USE_OPENGLX=1
On this machine the XMFLAGS=
On this machine the XMLIBS=
On this machine the XMFLAGS=
On this machine the XAWFLAGS=
On this machine the XAWLIBS=
On this machine the G4LIB_BUILD_SHARED=1
On this machine the G4LIB_BUILD_STATIC=1
On this machine the G4UI_USE_TCSH=1

LD_LIBRARY_PATH is set to include CLHEP and Geant4 libraries. 

NOTE : verify that the correct path for the CLHEP library
- $CLHEP_BASE_DIR/lib - is included in the $LD_LIBRARY_PATH
variable in your environment, and no other outdated installations
of CLHEP are by chance referenced through $LD_LIBRARY_PATH and
present in your system !


Configuring GATE options

G4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled
Ascii data output enabled
Transport and generation of optical photons is enabled
Checking your LD_LIBRARY_PATH variable...
 ==> OK: /home/dounia/gate_v4.0.0/root/lib is already in your LD_LIBRARY_PATH
Use of ROOT enabled
ROOT real-time plotter disabled
Checking your LD_LIBRARY_PATH variable...
 ==> OK: /home/dounia/gate_v4.0.0/lmf_v3.0/lib is already in your LD_LIBRARY_PATH
LMF data output enabled
FOCUS data output enabled
ECAT7 data output enabled
GATEHOME is set to /home/dounia/gate_v4.0.0/gate_v4.0.0
Checking your path variable...
 ==> OK: /home/dounia/gate_v4.0.0/gate_v4.0.0/bin/Linux-g++ is already in your path variable
G4VERSION9 is set: GATE is compatible with the geant4 version 9.1

Done


Dounia Taleb
Imagerie medicale experimentale - Département de physique
Université de Liège - Institut de Physique, B5
B-4000 Liège 1 (Sart-Tilman) - Belgique
Tel: +32-4-3663152 


 


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